==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 07-DEC-07 2JY8 . COMPND 2 MOLECULE: UBIQUITIN-BINDING PROTEIN P62; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.E.LONG,R.LAYFIELD,M.S.SEARLE . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3838.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 57.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-118.3 34.8 12.0 9.6 2 2 A S - 0 0 112 5,-0.0 5,-0.1 2,-0.0 0, 0.0 -0.890 360.0-169.0-113.9 101.9 36.6 9.0 11.2 3 3 A P > - 0 0 51 0, 0.0 3,-0.7 0, 0.0 2,-0.4 -0.732 23.0-120.6 -93.3 136.9 34.2 6.1 11.9 4 4 A P T 3 S+ 0 0 111 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.615 98.4 5.6 -77.8 123.9 35.2 3.0 14.0 5 5 A E T 3 S+ 0 0 151 -2,-0.4 0, 0.0 1,-0.0 0, 0.0 0.254 124.0 72.9 87.9 -11.9 35.1 -0.2 12.1 6 6 A A S < S+ 0 0 57 -3,-0.7 -1,-0.0 3,-0.1 0, 0.0 -0.047 108.0 23.6-121.5 28.5 34.3 1.8 9.0 7 7 A D S > S+ 0 0 51 -5,-0.1 4,-4.4 39,-0.0 5,-0.2 0.296 120.2 42.8-152.8 -60.0 37.8 3.2 8.4 8 8 A P H > S+ 0 0 44 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.999 118.7 40.6 -62.1 -71.3 40.6 1.2 10.0 9 9 A R H > S+ 0 0 161 1,-0.2 4,-0.7 2,-0.2 -3,-0.1 0.690 124.9 44.4 -53.2 -16.6 39.6 -2.3 9.1 10 10 A L H > S+ 0 0 6 2,-0.2 4,-0.7 1,-0.1 -1,-0.2 0.877 111.5 47.8 -93.1 -49.5 38.7 -0.8 5.8 11 11 A I H < S+ 0 0 47 -4,-4.4 4,-0.4 1,-0.2 -2,-0.2 0.569 107.6 64.1 -68.0 -8.2 41.7 1.4 5.2 12 12 A E H >X S+ 0 0 96 -4,-1.7 3,-3.1 2,-0.2 4,-0.6 0.964 90.5 56.3 -81.0 -58.6 43.8 -1.6 6.1 13 13 A S H >< S+ 0 0 20 -4,-0.7 3,-0.7 1,-0.3 4,-0.3 0.788 107.7 56.8 -42.1 -27.3 43.0 -4.0 3.3 14 14 A L G >X>S+ 0 0 0 -4,-0.7 4,-2.6 1,-0.2 3,-1.7 0.777 78.4 86.3 -77.4 -27.5 44.2 -1.1 1.2 15 15 A S G <45S+ 0 0 81 -3,-3.1 -1,-0.2 -4,-0.4 -2,-0.2 0.765 92.1 52.6 -43.3 -24.4 47.6 -1.0 2.9 16 16 A Q G <<5S+ 0 0 91 -3,-0.7 -1,-0.3 -4,-0.6 -2,-0.2 0.835 125.4 21.3 -81.2 -36.7 48.3 -3.6 0.2 17 17 A M T X>5S+ 0 0 28 -3,-1.7 3,-1.8 -4,-0.3 4,-0.6 0.872 113.6 65.2 -96.2 -53.4 47.1 -1.3 -2.6 18 18 A L T 3<5S+ 0 0 61 -4,-2.6 -3,-0.2 1,-0.3 -2,-0.1 0.640 75.3 96.0 -46.9 -14.4 47.3 2.2 -1.2 19 19 A S T 34 S+ 0 0 37 -3,-0.3 4,-1.3 1,-0.1 -3,-0.1 0.427 86.6 118.7 73.3 -3.6 37.0 -4.1 -9.9 28 28 A W H > S+ 0 0 108 1,-0.2 4,-0.7 2,-0.2 3,-0.3 0.957 80.5 34.4 -58.1 -55.2 40.2 -6.0 -9.4 29 29 A L H >> S+ 0 0 0 1,-0.2 4,-1.5 2,-0.2 3,-1.3 0.915 102.9 75.8 -67.4 -44.8 40.6 -5.0 -5.7 30 30 A T H 3> S+ 0 0 29 1,-0.3 4,-2.9 2,-0.2 -1,-0.2 0.844 93.4 53.5 -32.1 -54.9 36.9 -5.0 -5.0 31 31 A R H 3< S+ 0 0 196 -4,-1.3 4,-0.3 -3,-0.3 -1,-0.3 0.919 112.5 45.4 -49.5 -48.5 37.0 -8.8 -5.0 32 32 A L H X< S+ 0 0 70 -3,-1.3 3,-4.5 -4,-0.7 4,-0.2 0.995 112.2 46.8 -58.4 -70.5 39.8 -8.6 -2.4 33 33 A L H >< S+ 0 0 0 -4,-1.5 3,-3.8 1,-0.3 5,-0.4 0.825 96.7 76.0 -41.6 -37.3 38.3 -5.9 -0.1 34 34 A Q G >< S+ 0 0 61 -4,-2.9 3,-3.3 -5,-0.4 -1,-0.3 0.762 73.0 83.4 -48.7 -22.6 35.1 -8.0 -0.3 35 35 A T G < S+ 0 0 92 -3,-4.5 -1,-0.3 -4,-0.3 -2,-0.2 0.805 80.2 63.5 -50.9 -29.8 37.0 -10.2 2.1 36 36 A K G < S- 0 0 77 -3,-3.8 -1,-0.3 -4,-0.2 -2,-0.2 0.727 119.2-115.7 -68.3 -21.1 35.7 -7.8 4.7 37 37 A N S < S+ 0 0 153 -3,-3.3 -3,-0.1 -4,-0.3 -2,-0.1 0.295 90.4 57.1 101.9 -4.9 32.2 -8.9 3.7 38 38 A Y S S- 0 0 92 -5,-0.4 2,-0.4 1,-0.0 -1,-0.2 0.146 95.4 -51.1-123.2-121.4 31.0 -5.6 2.4 39 39 A D >> - 0 0 84 1,-0.1 4,-0.6 -3,-0.1 3,-0.6 -0.980 15.0-147.5-135.6 147.1 32.3 -3.2 -0.3 40 40 A I H 3>>S+ 0 0 4 -2,-0.4 4,-3.0 1,-0.2 5,-0.8 0.700 89.8 86.5 -76.3 -20.9 35.6 -1.6 -1.3 41 41 A G H 3>5S+ 0 0 26 1,-0.3 4,-1.1 2,-0.2 -1,-0.2 0.912 97.3 40.8 -44.0 -44.8 33.6 1.3 -2.6 42 42 A A H <45S+ 0 0 61 -3,-0.6 -1,-0.3 2,-0.2 -2,-0.2 0.841 121.8 43.7 -70.8 -35.6 33.8 2.5 0.9 43 43 A A H >X5S+ 0 0 0 -4,-0.6 3,-3.6 2,-0.2 4,-0.6 0.988 113.5 45.5 -73.4 -64.4 37.5 1.4 1.1 44 44 A L H >X5S+ 0 0 18 -4,-3.0 3,-0.9 1,-0.3 4,-0.6 0.792 101.2 72.2 -49.4 -29.3 38.8 2.6 -2.3 45 45 A D H 3<