==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 12-DEC-07 2JYD . COMPND 2 MOLECULE: F5 DOMAIN OF MYELIN TRANSCRIPTION FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI,J.A.LOWRY, . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3166.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 8.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 67 0, 0.0 3,-0.2 0, 0.0 31,-0.1 0.000 360.0 360.0 360.0-172.7 0.7 10.6 2.8 2 2 A S + 0 0 134 1,-0.3 2,-0.5 2,-0.0 30,-0.1 0.857 360.0 30.6 -89.0 -39.6 2.6 11.4 6.0 3 3 A M S S+ 0 0 123 28,-0.0 30,-0.4 6,-0.0 -1,-0.3 -0.906 78.4 159.7-124.4 99.5 4.8 8.2 5.8 4 4 A A - 0 0 27 -2,-0.5 2,-0.2 -3,-0.2 5,-0.2 0.166 35.4 -93.2 -94.1-144.7 5.4 7.0 2.3 5 5 A A B > -A 8 0A 30 3,-1.3 3,-1.0 6,-0.5 -1,-0.2 -0.645 40.0 -86.8-126.3-174.5 8.2 4.7 1.0 6 6 A H T 3 S+ 0 0 193 1,-0.3 2,-0.2 -2,-0.2 3,-0.1 0.828 124.8 64.7 -65.2 -27.8 11.7 5.0 -0.5 7 7 A S T > S- 0 0 65 1,-0.3 3,-1.2 5,-0.2 4,-0.5 -0.049 113.1-122.2 -85.3 33.6 9.9 5.3 -3.9 8 8 A A B X -A 5 0A 51 -3,-1.0 -3,-1.3 1,-0.2 3,-0.8 -0.056 56.3 -41.3 58.6-159.5 8.5 8.6 -2.6 9 9 A D T 3 S+ 0 0 63 1,-0.2 -1,-0.2 -5,-0.2 3,-0.1 -0.112 114.8 97.0 -92.8 37.6 4.7 9.2 -2.5 10 10 A L T < S+ 0 0 133 -3,-1.2 2,-0.2 1,-0.1 -1,-0.2 0.797 99.8 3.9 -92.4 -28.5 4.3 7.5 -5.8 11 11 A K S < S- 0 0 37 -3,-0.8 -6,-0.5 -4,-0.5 8,-0.2 -0.710 91.4 -84.6-142.4-176.9 3.5 4.3 -4.0 12 12 A C - 0 0 0 6,-0.4 -5,-0.2 -2,-0.2 20,-0.2 -0.429 37.1-104.7 -93.5 167.9 2.9 3.2 -0.4 13 13 A P S S+ 0 0 18 0, 0.0 -7,-0.2 0, 0.0 -9,-0.1 0.872 93.0 93.2 -57.6 -44.3 5.3 2.0 2.3 14 14 A T - 0 0 4 1,-0.2 -2,-0.2 2,-0.1 31,-0.1 -0.382 61.8-159.7 -60.4 117.9 4.5 -1.7 2.0 15 15 A P S S+ 0 0 56 0, 0.0 30,-0.2 0, 0.0 -1,-0.2 0.814 92.3 50.3 -68.9 -32.8 7.0 -3.3 -0.5 16 16 A G S S+ 0 0 28 28,-2.1 29,-0.2 22,-0.1 2,-0.1 0.797 105.3 69.3 -78.9 -23.3 4.7 -6.2 -1.2 17 17 A C - 0 0 4 27,-0.3 29,-0.1 1,-0.1 19,-0.1 -0.435 67.7-156.1 -88.9 162.0 1.8 -3.9 -1.9 18 18 A D - 0 0 77 2,-0.3 -6,-0.4 -2,-0.1 -1,-0.1 0.749 40.6-107.7-109.6 -37.3 1.7 -1.6 -4.9 19 19 A G S S+ 0 0 0 1,-0.5 11,-3.4 -8,-0.2 2,-0.3 0.169 81.0 111.8 125.6 -14.5 -0.6 1.2 -3.9 20 20 A S B S+B 29 0B 57 9,-0.3 -1,-0.5 11,-0.1 9,-0.3 -0.700 71.1 9.3 -92.3 139.2 -3.7 0.4 -6.0 21 21 A G S S- 0 0 21 7,-2.2 2,-0.3 -2,-0.3 7,-0.1 -0.420 75.5-110.3 93.8-170.0 -6.8 -0.6 -4.2 22 22 A H - 0 0 37 5,-0.2 14,-0.2 -2,-0.1 13,-0.1 -0.963 18.1-119.8-159.0 153.2 -7.6 -0.7 -0.4 23 23 A I S S+ 0 0 106 12,-0.8 13,-0.1 -2,-0.3 -1,-0.1 0.853 120.2 55.2 -63.7 -26.6 -8.1 -3.2 2.3 24 24 A T S S- 0 0 76 11,-0.2 -1,-0.2 -3,-0.1 12,-0.0 0.951 98.0-141.5 -64.3 -61.6 -11.5 -1.5 2.4 25 25 A G S S+ 0 0 58 2,-0.0 -2,-0.1 0, 0.0 3,-0.1 0.897 73.1 101.3 90.7 44.9 -12.5 -2.0 -1.2 26 26 A N S S+ 0 0 126 0, 0.0 2,-0.2 0, 0.0 -3,-0.0 0.230 72.6 50.2-141.4 5.1 -14.1 1.5 -1.6 27 27 A Y S S- 0 0 154 1,-0.1 -5,-0.2 -5,-0.1 3,-0.1 -0.786 72.8-122.1-137.7-177.9 -11.4 3.5 -3.4 28 28 A A S S- 0 0 79 1,-0.3 -7,-2.2 -2,-0.2 2,-0.3 0.809 82.1 -20.5 -98.5 -40.2 -9.1 3.3 -6.4 29 29 A S B -B 20 0B 51 -9,-0.3 -1,-0.3 7,-0.0 2,-0.3 -0.956 50.9-155.7-160.2 174.7 -5.7 3.7 -4.8 30 30 A H - 0 0 12 -11,-3.4 -18,-0.1 -2,-0.3 3,-0.1 -0.884 14.4-150.4-148.3 176.9 -3.7 4.8 -1.8 31 31 A R S S+ 0 0 101 -2,-0.3 2,-0.3 -20,-0.1 -20,-0.1 0.057 74.5 53.5-143.5 22.4 -0.1 5.9 -0.9 32 32 A S S >> S- 0 0 18 -20,-0.2 3,-1.3 -13,-0.1 4,-0.6 -0.940 89.8 -98.9-150.0 173.5 0.2 4.8 2.7 33 33 A L T 34 S+ 0 0 56 -30,-0.4 6,-0.1 -2,-0.3 -29,-0.1 0.487 111.5 75.5 -76.6 -2.8 -0.1 1.7 5.0 34 34 A S T 34 S+ 0 0 108 1,-0.2 -1,-0.3 -12,-0.0 -11,-0.1 0.698 106.3 31.6 -79.4 -21.1 -3.5 3.0 6.0 35 35 A G T <4 S+ 0 0 1 -3,-1.3 -12,-0.8 -13,-0.1 -2,-0.2 0.470 85.0 126.5-113.3 -8.2 -4.9 1.8 2.7 36 36 A C >< - 0 0 3 -4,-0.6 3,-1.4 -14,-0.2 -14,-0.1 -0.385 38.4-169.7 -58.3 112.1 -2.7 -1.2 2.0 37 37 A P T 3 S+ 0 0 14 0, 0.0 -1,-0.2 0, 0.0 -15,-0.1 0.667 96.0 43.7 -76.1 -10.9 -5.0 -4.1 1.3 38 38 A R T > S+ 0 0 88 -24,-0.0 3,-2.3 4,-0.0 2,-0.5 0.043 79.8 156.5-116.2 21.2 -1.8 -6.2 1.5 39 39 A A T < S- 0 0 30 -3,-1.4 3,-0.1 1,-0.3 5,-0.1 -0.348 89.8 -32.6 -55.8 101.4 -0.5 -4.4 4.5 40 40 A K T 3 S+ 0 0 134 -2,-0.5 2,-1.4 1,-0.2 -1,-0.3 0.840 96.7 157.9 48.9 36.2 1.8 -7.1 5.9 41 41 A K S < S- 0 0 120 -3,-2.3 2,-2.8 2,-0.3 -1,-0.2 -0.602 74.2 -76.6 -92.0 72.1 -0.7 -9.5 4.5 42 42 A S S S+ 0 0 116 -2,-1.4 2,-2.1 1,-0.1 3,-0.4 -0.405 135.6 64.8 68.9 -65.2 1.6 -12.5 4.2 43 43 A G + 0 0 34 -2,-2.8 -2,-0.3 1,-0.2 3,-0.2 -0.477 62.6 140.7 -83.6 68.3 3.2 -11.1 1.0 44 44 A L S S+ 0 0 83 -2,-2.1 -28,-2.1 1,-0.3 2,-0.4 0.811 72.1 20.0 -80.5 -34.0 4.7 -8.2 2.9 45 45 A R 0 0 194 -3,-0.4 -1,-0.3 -30,-0.2 -29,-0.1 -0.899 360.0 360.0-143.8 110.6 8.0 -8.2 1.1 46 46 A V 0 0 179 -2,-0.4 -30,-0.1 -3,-0.2 -1,-0.1 0.622 360.0 360.0-126.7 360.0 8.6 -9.8 -2.3