==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CYTOKINE 19-DEC-07 2JYT . COMPND 2 MOLECULE: GRANULIN-5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.TOLKATCHEV,P.WANG,Z.CHEN,P.XU,F.NI . 55 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4673.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 43.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 16.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A V 0 0 119 0, 0.0 2,-1.1 0, 0.0 8,-0.1 0.000 360.0 360.0 360.0 96.4 -9.6 -7.7 6.5 2 2 A P + 0 0 128 0, 0.0 13,-0.1 0, 0.0 3,-0.1 -0.535 360.0 113.9 -70.9 98.1 -10.1 -4.4 8.5 3 3 A a S S- 0 0 7 -2,-1.1 4,-0.5 1,-0.6 3,-0.2 -0.204 80.5 -86.2-163.9 58.4 -12.1 -2.2 6.1 4 4 A D - 0 0 73 1,-0.2 -1,-0.6 2,-0.1 0, 0.0 0.040 42.2 -97.5 60.2-175.3 -15.6 -1.5 7.5 5 5 A N S S+ 0 0 168 -3,-0.1 -1,-0.2 1,-0.1 3,-0.0 0.266 109.2 76.4-121.1 5.8 -18.5 -3.9 7.0 6 6 A V S S+ 0 0 89 -3,-0.2 2,-0.3 18,-0.0 -2,-0.1 0.624 101.2 34.5 -91.0 -16.7 -20.1 -2.1 4.0 7 7 A S - 0 0 45 -4,-0.5 2,-0.4 17,-0.1 -4,-0.1 -0.800 69.1-138.3-131.5 173.5 -17.5 -3.4 1.6 8 8 A S + 0 0 109 -2,-0.3 17,-0.2 17,-0.0 -3,-0.1 -0.967 19.5 177.0-140.7 121.0 -15.4 -6.5 1.0 9 9 A b - 0 0 13 -2,-0.4 2,-0.3 -8,-0.1 4,-0.1 -0.974 23.2-130.4-127.0 139.1 -11.8 -6.6 -0.1 10 10 A P - 0 0 97 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.635 67.7 -18.5 -88.3 143.2 -9.5 -9.6 -0.6 11 11 A S S S- 0 0 101 -2,-0.3 2,-0.8 1,-0.1 -2,-0.1 -0.004 121.8 -13.9 56.5-167.6 -6.0 -9.8 0.9 12 12 A S S S+ 0 0 102 -11,-0.0 2,-0.3 16,-0.0 18,-0.2 -0.520 83.7 163.0 -68.4 105.4 -4.3 -6.6 2.2 13 13 A D - 0 0 32 -2,-0.8 2,-0.3 -4,-0.1 -4,-0.1 -0.886 35.1-120.1-125.5 156.7 -6.3 -3.8 0.7 14 14 A T E -A 26 0A 68 12,-1.0 12,-2.4 -2,-0.3 2,-1.1 -0.758 24.5-120.2 -99.1 142.5 -6.6 -0.1 1.4 15 15 A a E -A 25 0A 46 -2,-0.3 2,-0.7 10,-0.2 10,-0.2 -0.688 31.6-176.1 -84.7 99.1 -9.9 1.6 2.4 16 16 A C E -A 24 0A 52 8,-2.1 8,-2.0 -2,-1.1 2,-0.3 -0.854 8.5-161.6 -99.1 111.7 -10.7 4.2 -0.2 17 17 A Q E -A 23 0A 75 -2,-0.7 6,-0.2 6,-0.2 -2,-0.0 -0.685 5.6-142.7 -95.4 147.8 -13.8 6.2 0.7 18 18 A L - 0 0 113 4,-1.8 2,-1.8 -2,-0.3 -1,-0.1 0.390 65.0 -36.6 -80.5-142.2 -15.8 8.3 -1.8 19 19 A T S S- 0 0 138 1,-0.2 -1,-0.1 0, 0.0 -2,-0.0 -0.263 109.2 -69.7 -80.8 51.3 -17.5 11.6 -1.0 20 20 A S S S+ 0 0 96 -2,-1.8 -1,-0.2 2,-0.2 3,-0.1 0.784 117.7 60.1 64.3 118.6 -18.4 10.5 2.5 21 21 A G S S+ 0 0 61 -3,-0.1 2,-0.4 1,-0.1 -1,-0.1 -0.366 92.3 56.6 135.0 -57.4 -21.0 7.8 2.8 22 22 A E - 0 0 118 -16,-0.0 -4,-1.8 2,-0.0 2,-0.4 -0.868 65.8-146.7-112.1 144.4 -19.8 4.7 1.0 23 23 A W E -A 17 0A 88 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.913 18.5-177.7-112.0 133.8 -16.5 2.8 1.5 24 24 A G E -A 16 0A 17 -8,-2.0 -8,-2.1 -2,-0.4 2,-0.5 -0.835 26.0-117.5-126.8 165.4 -14.6 1.1 -1.3 25 25 A b E -A 15 0A 37 -2,-0.3 -10,-0.2 -10,-0.2 -17,-0.0 -0.904 24.3-148.0-106.8 123.1 -11.4 -1.0 -1.7 26 26 A C E -A 14 0A 45 -12,-2.4 -12,-1.0 -2,-0.5 2,-0.2 -0.709 33.2 -95.7 -91.2 138.4 -8.6 0.4 -3.8 27 27 A P - 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -14,-0.1 -0.304 41.7-130.7 -53.6 112.7 -6.3 -2.0 -5.7 28 28 A I - 0 0 71 -2,-0.2 2,-0.1 1,-0.1 -15,-0.0 -0.528 13.2-158.5 -71.4 125.0 -3.3 -2.6 -3.5 29 29 A P - 0 0 105 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.192 57.6 -85.2 -96.5 39.9 -0.0 -2.1 -5.5 30 30 A E - 0 0 168 -18,-0.2 2,-1.3 1,-0.2 13,-0.0 0.985 49.1-150.8 54.6 78.2 2.1 -4.2 -3.0 31 31 A A + 0 0 79 11,-0.0 -1,-0.2 9,-0.0 2,-0.1 -0.652 28.7 166.3 -84.2 91.7 2.9 -1.6 -0.4 32 32 A V - 0 0 45 -2,-1.3 2,-0.3 -3,-0.2 11,-0.0 -0.240 28.9-115.8 -93.9-174.8 6.3 -2.7 0.9 33 33 A C - 0 0 89 8,-0.2 2,-0.2 7,-0.2 7,-0.2 -0.926 25.4-177.3-127.8 152.7 8.8 -0.9 3.1 34 34 A c - 0 0 22 2,-0.6 12,-0.1 5,-0.5 5,-0.1 -0.687 48.5 -73.5-133.2-174.4 12.4 0.3 2.6 35 35 A S S S+ 0 0 99 -2,-0.2 2,-0.1 2,-0.1 13,-0.1 0.956 115.3 51.0 -47.4 -65.6 15.2 2.0 4.5 36 36 A D S > S- 0 0 72 11,-0.3 -2,-0.6 1,-0.1 3,-0.6 -0.384 79.6-135.9 -75.1 154.3 13.6 5.5 4.4 37 37 A H T 3 S+ 0 0 177 1,-0.2 -1,-0.1 -4,-0.1 -2,-0.1 0.144 98.3 68.2 -95.7 18.7 10.0 6.0 5.5 38 38 A Q T 3 S+ 0 0 187 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.251 104.2 34.1-117.4 7.8 9.3 8.2 2.5 39 39 A H < - 0 0 83 -3,-0.6 -5,-0.5 -5,-0.1 2,-0.3 -0.796 64.5-142.8-145.8-173.2 9.6 5.5 -0.1 40 40 A C - 0 0 65 -2,-0.2 -7,-0.2 -7,-0.2 6,-0.1 -0.918 11.6-176.5-163.8 134.4 8.9 1.8 -0.8 41 41 A d - 0 0 4 -2,-0.3 -8,-0.2 4,-0.2 3,-0.2 -0.924 43.1 -72.4-132.3 157.3 10.6 -1.0 -2.7 42 42 A P S > S- 0 0 69 0, 0.0 3,-2.6 0, 0.0 -1,-0.1 -0.037 70.7 -77.0 -46.1 146.4 9.8 -4.7 -3.5 43 43 A Q T 3 S+ 0 0 170 1,-0.3 3,-0.1 -3,-0.0 -9,-0.1 -0.241 123.7 25.2 -50.9 122.8 10.1 -7.1 -0.5 44 44 A G T 3 S+ 0 0 51 1,-0.5 -1,-0.3 -3,-0.2 2,-0.2 0.250 109.6 88.9 104.2 -11.0 13.8 -7.8 0.0 45 45 A Y < - 0 0 113 -3,-2.6 -1,-0.5 -4,-0.2 2,-0.3 -0.578 60.2-145.3-111.9 175.9 15.0 -4.5 -1.5 46 46 A T E -B 54 0B 26 8,-2.0 8,-2.4 -2,-0.2 2,-0.8 -0.938 24.9-102.6-140.2 162.0 15.6 -1.0 -0.2 47 47 A c E -B 53 0B 6 -2,-0.3 2,-0.4 6,-0.2 -11,-0.3 -0.772 43.0-178.5 -90.6 107.6 15.4 2.6 -1.3 48 48 A V E >> -B 52 0B 43 4,-1.8 4,-1.1 -2,-0.8 3,-1.1 -0.868 66.0 -1.3-110.1 141.1 18.8 3.8 -2.3 49 49 A A T 34 S- 0 0 106 -2,-0.4 -1,-0.2 1,-0.2 4,-0.1 0.628 114.2 -87.2 59.3 12.5 19.7 7.4 -3.5 50 50 A E T 34 S+ 0 0 122 2,-0.2 -1,-0.2 -3,-0.1 3,-0.1 0.945 120.1 62.5 52.7 55.1 15.9 8.0 -3.2 51 51 A G T <4 S+ 0 0 53 -3,-1.1 2,-0.2 1,-0.7 -2,-0.2 0.178 94.5 34.4-163.7 -60.9 15.2 6.7 -6.7 52 52 A Q E < S-B 48 0B 158 -4,-1.1 -4,-1.8 -11,-0.0 -1,-0.7 -0.506 74.9-110.4-106.0 176.5 16.0 3.1 -7.4 53 53 A d E -B 47 0B 56 -6,-0.2 -6,-0.2 -2,-0.2 2,-0.2 -0.926 32.7-179.2-114.2 133.6 15.9 -0.1 -5.3 54 54 A Q E B 46 0B 116 -8,-2.4 -8,-2.0 -2,-0.4 -13,-0.0 -0.531 360.0 360.0-117.2-175.4 18.9 -2.0 -4.1 55 55 A K 0 0 169 -10,-0.2 -10,-0.2 -2,-0.2 -8,-0.0 -0.747 360.0 360.0-104.8 360.0 19.6 -5.2 -2.1