==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 21-JAN-08 2JZW . COMPND 2 MOLECULE: HIV-1 NUCLEOCAPSID PROTEIN NCP7(12-55); . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.BOURBIGOT,N.RAMALANJAONA,G.F.J.SALGADO,Y.MELY,B.P.ROQUES, . 44 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4170.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 29.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A N 0 0 189 0, 0.0 2,-0.3 0, 0.0 9,-0.0 0.000 360.0 360.0 360.0 176.7 -10.1 -10.9 -3.2 2 13 A V - 0 0 47 10,-0.1 2,-0.4 11,-0.0 9,-0.4 -0.944 360.0-128.6-158.5 167.1 -7.8 -8.1 -1.9 3 14 A K - 0 0 155 -2,-0.3 6,-0.2 7,-0.2 7,-0.2 -1.000 35.6-112.2-130.0 126.9 -7.0 -5.9 1.1 4 15 A C > - 0 0 6 5,-2.0 4,-0.7 -2,-0.4 9,-0.1 -0.313 14.8-155.5 -62.0 138.5 -6.9 -2.1 0.8 5 16 A F T 4 S+ 0 0 82 1,-0.2 -1,-0.1 2,-0.2 8,-0.1 0.800 94.4 53.7 -83.4 -33.6 -3.4 -0.5 1.2 6 17 A N T 4 S- 0 0 26 3,-0.1 -1,-0.2 1,-0.1 -2,-0.1 0.635 138.0 -6.9 -73.8 -20.6 -4.9 2.9 2.2 7 18 A C T 4 S- 0 0 75 2,-0.2 -2,-0.2 12,-0.1 -1,-0.1 0.537 87.6-113.5-151.7 -28.9 -7.1 1.4 5.0 8 19 A G < + 0 0 40 -4,-0.7 -4,-0.4 1,-0.4 -3,-0.1 -0.285 69.7 125.7 115.5 -45.1 -7.1 -2.5 5.1 9 20 A K - 0 0 165 -6,-0.2 -5,-2.0 1,-0.1 3,-0.4 -0.092 52.5-132.6 -54.1 144.8 -10.8 -3.2 4.2 10 21 A E S S+ 0 0 112 -7,-0.2 2,-0.8 1,-0.2 -7,-0.2 0.144 78.3 67.1 -77.2-163.4 -11.5 -5.6 1.2 11 22 A G S S+ 0 0 85 -9,-0.4 2,-0.2 -8,-0.0 -1,-0.2 -0.052 107.3 37.3 77.6 -33.6 -13.9 -5.1 -1.7 12 23 A H S S- 0 0 50 -2,-0.8 2,-0.2 -3,-0.4 -8,-0.1 -0.803 74.7-125.9-135.3 175.6 -11.7 -2.2 -3.0 13 24 A T >> - 0 0 37 -2,-0.2 4,-1.7 -9,-0.1 3,-1.4 -0.722 42.9 -89.2-120.6 170.9 -8.1 -1.1 -3.5 14 25 A A G >4 S+ 0 0 8 1,-0.3 3,-0.7 -2,-0.2 5,-0.3 0.897 125.7 57.5 -49.9 -50.8 -6.2 2.1 -2.4 15 26 A R G 34 S+ 0 0 213 1,-0.3 -1,-0.3 3,-0.1 -11,-0.0 0.797 114.1 39.9 -45.6 -38.0 -7.1 3.9 -5.7 16 27 A N G <4 S+ 0 0 71 -3,-1.4 2,-0.5 2,-0.1 -1,-0.3 0.672 93.4 102.4 -88.0 -24.3 -10.8 3.2 -4.9 17 28 A C << - 0 0 18 -4,-1.7 2,-1.7 -3,-0.7 4,-0.1 -0.536 63.2-151.7 -68.2 115.0 -10.5 4.0 -1.1 18 29 A R + 0 0 259 -2,-0.5 -1,-0.1 2,-0.1 -3,-0.1 -0.530 60.9 106.8 -84.2 67.4 -11.8 7.5 -0.4 19 30 A A S S- 0 0 38 -2,-1.7 2,-0.4 -5,-0.3 -12,-0.1 -0.939 84.6 -78.4-140.4 160.1 -9.4 7.9 2.7 20 31 A P - 0 0 129 0, 0.0 2,-0.1 0, 0.0 -2,-0.1 -0.501 55.7-157.1 -64.6 116.6 -6.2 9.9 3.5 21 32 A R - 0 0 174 -2,-0.4 2,-0.1 1,-0.1 -15,-0.1 -0.448 11.3-107.3 -97.2 167.9 -3.4 7.9 1.7 22 33 A K - 0 0 107 -2,-0.1 -1,-0.1 2,-0.1 4,-0.1 -0.324 12.0-134.7 -89.7 169.4 0.4 7.8 2.4 23 34 A K S S+ 0 0 179 6,-0.1 3,-0.1 2,-0.1 -1,-0.1 0.902 81.7 38.1 -89.2 -52.9 3.3 9.4 0.4 24 35 A G S S- 0 0 6 5,-0.3 7,-0.3 1,-0.2 6,-0.2 -0.250 109.8 -37.6 -96.6 179.9 5.7 6.4 0.4 25 36 A C > - 0 0 0 5,-2.3 4,-1.2 8,-0.9 -1,-0.2 -0.087 51.3-144.0 -34.4 113.2 5.8 2.6 0.1 26 37 A W T 4 S+ 0 0 86 2,-0.1 -1,-0.1 1,-0.1 -2,-0.1 0.861 91.7 40.1 -58.6 -40.8 2.7 1.3 2.0 27 38 A K T 4 S+ 0 0 103 1,-0.1 -1,-0.1 3,-0.1 8,-0.0 0.997 128.9 20.8 -75.2 -70.3 4.4 -1.8 3.4 28 39 A C T 4 S- 0 0 47 2,-0.1 -2,-0.1 1,-0.1 -1,-0.1 0.845 96.3-126.1 -72.6 -39.0 8.0 -0.9 4.3 29 40 A G < + 0 0 43 -4,-1.2 -5,-0.3 1,-0.4 -6,-0.1 -0.240 66.8 120.3 121.5 -44.7 7.5 3.0 4.7 30 41 A K - 0 0 129 -6,-0.2 -5,-2.3 1,-0.1 -1,-0.4 -0.028 45.2-159.3 -49.5 159.7 10.3 4.4 2.4 31 42 A E S S+ 0 0 134 -7,-0.3 -1,-0.1 1,-0.1 -5,-0.1 0.772 71.6 89.0-117.3 -36.2 9.1 6.7 -0.6 32 43 A G S S+ 0 0 80 -8,-0.1 2,-0.3 -7,-0.1 -1,-0.1 0.475 106.7 18.7 -40.5 -16.4 11.8 6.7 -3.1 33 44 A H S S- 0 0 50 -3,-0.0 -8,-0.9 5,-0.0 2,-0.2 -0.918 86.4-109.7-150.8 171.6 10.0 3.5 -4.5 34 45 A Q > - 0 0 95 -2,-0.3 4,-2.7 -10,-0.1 -9,-0.1 -0.500 32.3-101.3-106.5 171.5 6.4 2.0 -4.2 35 46 A M T 4 S+ 0 0 55 1,-0.2 -1,-0.1 2,-0.2 -10,-0.0 0.931 124.9 48.4 -59.1 -46.3 5.0 -1.2 -2.5 36 47 A K T 4 S+ 0 0 195 1,-0.2 -1,-0.2 3,-0.0 -11,-0.0 0.925 114.4 47.2 -53.4 -50.0 4.9 -3.0 -5.8 37 48 A D T 4 S+ 0 0 106 2,-0.0 -2,-0.2 0, 0.0 -1,-0.2 0.870 96.6 94.2 -58.7 -45.2 8.5 -1.9 -6.5 38 49 A C < + 0 0 14 -4,-2.7 -11,-0.0 1,-0.1 -5,-0.0 -0.248 33.6 162.8 -63.7 137.2 9.7 -2.9 -3.0 39 50 A T + 0 0 129 2,-0.0 -1,-0.1 -2,-0.0 -4,-0.1 -0.172 41.5 117.5-141.6 32.7 11.3 -6.2 -2.3 40 51 A E S S- 0 0 72 1,-0.1 2,-0.0 0, 0.0 -2,-0.0 0.979 96.4 -22.1 -62.7 -88.8 13.0 -5.2 1.0 41 52 A R S S+ 0 0 224 3,-0.0 2,-1.7 1,-0.0 3,-0.4 -0.499 75.6 156.7-129.1 59.6 11.3 -7.5 3.7 42 53 A Q + 0 0 72 1,-0.2 -15,-0.0 2,-0.1 -14,-0.0 -0.520 21.5 135.2 -85.2 68.0 8.0 -8.5 2.1 43 54 A A 0 0 92 -2,-1.7 -1,-0.2 0, 0.0 -2,-0.0 0.962 360.0 360.0 -75.0 -60.2 7.7 -11.7 4.2 44 55 A N 0 0 173 -3,-0.4 -2,-0.1 0, 0.0 -3,-0.0 0.308 360.0 360.0-156.6 360.0 4.0 -11.2 5.1