==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATOR 30-JUN-08 2K5S . COMPND 2 MOLECULE: MODULATING PROTEIN YMOA; . SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; . AUTHOR R.L.MCFEETERS,R.BYRD . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6239.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 16.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 50.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 101 0, 0.0 2,-0.0 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 70.5 72.6 -9.1 0.5 2 2 A T >> - 0 0 87 1,-0.1 3,-0.8 4,-0.0 4,-0.7 -0.310 360.0-105.4 -76.9 163.2 74.4 -5.9 1.5 3 3 A K H 3> S+ 0 0 81 1,-0.2 4,-2.9 2,-0.2 5,-0.4 0.675 109.6 82.1 -64.3 -15.2 73.8 -2.5 -0.2 4 4 A T H 3> S+ 0 0 78 1,-0.2 4,-3.2 2,-0.2 5,-0.4 0.970 93.3 46.1 -51.5 -56.5 77.2 -2.9 -1.9 5 5 A D H <> S+ 0 0 93 -3,-0.8 4,-1.7 1,-0.2 5,-0.3 0.842 114.8 49.4 -52.7 -39.6 75.5 -5.1 -4.6 6 6 A Y H X S+ 0 0 28 -4,-0.7 4,-2.4 2,-0.2 5,-0.3 0.969 116.2 37.6 -66.0 -60.0 72.6 -2.7 -4.9 7 7 A L H X S+ 0 0 41 -4,-2.9 4,-2.8 2,-0.2 -2,-0.2 0.877 120.5 46.2 -64.5 -40.9 74.6 0.5 -5.3 8 8 A M H X S+ 0 0 115 -4,-3.2 4,-1.7 -5,-0.4 5,-0.2 0.992 114.6 45.3 -66.9 -59.8 77.3 -1.0 -7.5 9 9 A R H < S+ 0 0 189 -4,-1.7 3,-0.3 -5,-0.4 -2,-0.2 0.913 123.0 37.7 -49.8 -47.4 75.0 -2.9 -9.8 10 10 A L H >< S+ 0 0 6 -4,-2.4 3,-3.2 -5,-0.3 4,-0.4 0.944 109.8 59.2 -66.3 -55.0 72.8 0.1 -10.2 11 11 A R H 3< S+ 0 0 48 -4,-2.8 3,-0.3 -5,-0.3 -1,-0.2 0.733 104.7 52.1 -53.9 -21.0 75.4 2.8 -10.2 12 12 A K T 3< S+ 0 0 133 -4,-1.7 -1,-0.3 -3,-0.3 -2,-0.2 0.452 77.6 102.5 -94.2 1.4 77.0 1.1 -13.3 13 13 A C < - 0 0 34 -3,-3.2 -1,-0.2 -5,-0.2 -2,-0.1 0.931 65.3-163.3 -45.7 -50.6 73.7 1.2 -15.2 14 14 A T + 0 0 99 -4,-0.4 2,-0.4 -3,-0.3 -1,-0.2 0.215 57.6 69.1 85.5 -13.9 75.0 4.2 -17.1 15 15 A T > - 0 0 57 1,-0.2 4,-1.8 2,-0.0 -1,-0.0 -0.997 61.0-153.3-141.7 138.4 71.5 5.3 -18.4 16 16 A I H > S+ 0 0 90 -2,-0.4 4,-1.2 2,-0.2 3,-0.3 0.975 99.6 51.6 -68.6 -60.0 68.4 6.8 -16.7 17 17 A D H > S+ 0 0 127 1,-0.3 4,-0.8 2,-0.2 -1,-0.2 0.780 113.0 50.2 -52.4 -23.4 65.8 5.5 -19.2 18 18 A T H > S+ 0 0 49 2,-0.2 4,-1.9 1,-0.2 3,-0.5 0.895 93.7 70.1 -77.6 -45.8 67.4 2.1 -18.6 19 19 A L H X S+ 0 0 21 -4,-1.8 4,-2.3 -3,-0.3 -2,-0.2 0.844 100.0 52.3 -43.7 -33.4 67.3 2.3 -14.8 20 20 A E H X S+ 0 0 129 -4,-1.2 4,-2.0 2,-0.2 -1,-0.3 0.949 102.9 55.9 -65.6 -53.7 63.5 2.0 -15.4 21 21 A R H X S+ 0 0 202 -4,-0.8 4,-0.7 -3,-0.5 -2,-0.2 0.918 114.3 39.7 -49.4 -48.6 63.8 -1.2 -17.5 22 22 A V H >X S+ 0 0 49 -4,-1.9 4,-2.0 1,-0.2 3,-1.3 0.929 106.9 63.0 -65.7 -50.2 65.8 -3.0 -14.7 23 23 A I H 3X S+ 0 0 25 -4,-2.3 4,-1.2 -5,-0.3 -2,-0.2 0.903 101.3 51.8 -45.7 -49.0 63.7 -1.6 -11.8 24 24 A E H 3X S+ 0 0 145 -4,-2.0 4,-0.5 1,-0.2 -1,-0.3 0.837 108.2 54.4 -57.9 -30.0 60.5 -3.4 -13.1 25 25 A K H XX S+ 0 0 135 -3,-1.3 4,-1.1 -4,-0.7 3,-0.9 0.981 106.9 48.4 -65.6 -55.7 62.7 -6.6 -13.2 26 26 A N H 3X S+ 0 0 14 -4,-2.0 4,-1.1 1,-0.2 -1,-0.2 0.659 91.3 90.0 -52.6 -25.4 63.7 -6.2 -9.6 27 27 A K H 3< S+ 0 0 119 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.2 0.891 103.1 12.9 -48.4 -53.7 60.1 -5.7 -8.7 28 28 A Y H << S+ 0 0 196 -3,-0.9 -1,-0.2 -4,-0.5 -2,-0.2 0.800 121.8 60.7 -97.0 -32.9 59.0 -9.4 -8.2 29 29 A E H < S+ 0 0 133 -4,-1.1 -2,-0.2 2,-0.1 -3,-0.1 0.583 117.4 34.5 -71.8 -4.5 62.4 -11.2 -7.9 30 30 A L S < S- 0 0 36 -4,-1.1 2,-0.3 -5,-0.2 -3,-0.1 0.068 97.3-114.5-115.9-131.6 63.2 -8.9 -4.9 31 31 A S > - 0 0 41 1,-0.2 4,-3.1 -2,-0.1 3,-0.4 -0.978 15.9-108.2-170.0 157.6 60.4 -7.8 -2.4 32 32 A D H > S+ 0 0 140 -2,-0.3 4,-0.7 2,-0.2 -1,-0.2 0.950 117.9 52.6 -52.2 -58.1 58.6 -4.8 -1.1 33 33 A D H 4 S+ 0 0 125 1,-0.3 -1,-0.2 2,-0.2 3,-0.2 0.800 118.1 41.3 -47.4 -32.5 60.3 -4.9 2.3 34 34 A E H >> S+ 0 0 71 -3,-0.4 3,-3.6 1,-0.2 4,-0.6 0.819 91.3 81.9 -81.4 -47.9 63.5 -4.8 0.3 35 35 A L H 3X S+ 0 0 18 -4,-3.1 4,-2.7 1,-0.3 5,-0.2 0.699 78.3 73.6 -41.8 -22.1 62.5 -2.4 -2.4 36 36 A E H 3X S+ 0 0 132 -4,-0.7 4,-4.0 1,-0.2 5,-0.5 0.915 93.8 55.4 -58.1 -37.4 63.4 0.4 0.1 37 37 A L H <> S+ 0 0 50 -3,-3.6 4,-2.3 1,-0.2 5,-0.3 0.945 109.2 44.1 -55.1 -55.2 67.0 -0.6 -0.7 38 38 A F H X S+ 0 0 9 -4,-0.6 4,-1.9 3,-0.2 -1,-0.2 0.843 121.2 40.7 -62.6 -36.0 66.5 -0.1 -4.4 39 39 A Y H X S+ 0 0 150 -4,-2.7 4,-1.6 2,-0.2 -2,-0.2 0.968 118.8 42.6 -77.4 -57.7 64.7 3.2 -3.8 40 40 A S H < S+ 0 0 69 -4,-4.0 4,-0.5 -5,-0.2 -3,-0.2 0.822 124.2 40.8 -57.7 -33.0 66.8 4.6 -1.1 41 41 A A H >X S+ 0 0 0 -4,-2.3 3,-1.1 -5,-0.5 4,-0.7 0.949 108.9 54.5 -79.8 -58.8 69.9 3.4 -3.0 42 42 A A H >< S+ 0 0 10 -4,-1.9 3,-0.7 -5,-0.3 4,-0.5 0.787 96.9 66.8 -49.7 -35.3 69.1 4.2 -6.7 43 43 A D T >X S+ 0 0 45 -4,-1.6 3,-3.1 1,-0.2 4,-0.9 0.931 91.3 62.2 -53.2 -48.5 68.4 7.9 -5.9 44 44 A H H <> S+ 0 0 41 -3,-1.1 4,-0.7 -4,-0.5 -1,-0.2 0.863 103.3 51.0 -43.4 -43.4 72.1 8.4 -5.0 45 45 A R H S+ 0 0 66 -3,-3.1 4,-2.7 -4,-0.5 -1,-0.2 0.949 93.7 50.3 -76.6 -49.3 70.2 10.0 -10.1 47 47 A A H X S+ 0 0 3 -4,-0.9 4,-1.3 2,-0.2 6,-0.2 0.886 110.8 51.2 -58.3 -37.6 71.9 13.4 -9.2 48 48 A E H ><>S+ 0 0 8 -4,-0.7 3,-1.0 1,-0.2 5,-0.7 0.978 112.8 45.3 -61.6 -53.8 75.2 12.2 -10.8 49 49 A L H 3<5S+ 0 0 32 -4,-1.3 -2,-0.2 1,-0.3 -1,-0.2 0.849 101.4 67.5 -56.5 -37.7 73.3 11.2 -14.0 50 50 A T H 3<5S+ 0 0 68 -4,-2.7 -1,-0.3 -5,-0.1 -2,-0.2 0.884 123.8 13.1 -54.3 -35.3 71.4 14.6 -13.8 51 51 A M T <<5S- 0 0 56 -4,-1.3 -3,-0.1 -3,-1.0 -2,-0.1 0.624 106.8-105.7-101.7 -99.1 74.8 16.2 -14.6 52 52 A N T 5S+ 0 0 134 -5,-0.1 -3,-0.2 -4,-0.0 -4,-0.1 0.295 81.8 81.5 178.5 19.8 77.3 13.6 -15.8 53 53 A K S > - 0 0 75 0, 0.0 3,-1.0 0, 0.0 4,-0.6 -0.078 36.8-109.2 -51.9 157.7 71.2 15.0 1.8 60 60 A P H 3> S+ 0 0 100 0, 0.0 4,-0.5 0, 0.0 -2,-0.0 0.669 111.3 81.0 -65.0 -14.2 67.3 14.9 1.2 61 61 A T H >> S+ 0 0 83 1,-0.2 3,-0.8 2,-0.2 4,-0.6 0.874 86.5 52.1 -57.5 -46.0 67.8 18.6 0.1 62 62 A V H X> S+ 0 0 27 -3,-1.0 4,-2.9 1,-0.2 3,-1.9 0.904 95.3 64.2 -61.1 -51.1 69.0 17.6 -3.4 63 63 A W H 3< S+ 0 0 61 -4,-0.6 -1,-0.2 1,-0.3 -2,-0.2 0.697 102.9 53.3 -55.6 -13.8 66.2 15.3 -4.5 64 64 A Q H << S+ 0 0 161 -3,-0.8 -1,-0.3 -4,-0.5 -2,-0.2 0.744 128.4 18.0 -86.9 -27.3 63.9 18.4 -4.3 65 65 A H H << S- 0 0 80 -3,-1.9 -2,-0.2 -4,-0.6 -3,-0.2 0.806 70.8-172.2-107.1 -55.6 66.2 20.4 -6.6 66 66 A V S < S+ 0 0 34 -4,-2.9 -3,-0.1 -5,-0.1 -4,-0.1 0.938 72.6 72.2 55.2 49.3 68.4 18.0 -8.5 67 67 A K + 0 0 161 1,-0.2 -1,-0.1 -5,-0.1 -5,-0.1 0.345 63.8 95.7-152.9 -49.7 70.4 21.0 -9.9 68 68 A H + 0 0 134 -6,-0.1 2,-0.3 1,-0.0 -1,-0.2 -0.181 46.8 135.0 -56.2 148.1 72.6 22.6 -7.2 69 69 A H - 0 0 89 -3,-0.1 2,-0.3 2,-0.0 -1,-0.0 -0.953 37.8-130.5-174.3-176.7 76.2 21.5 -7.0 70 70 A H - 0 0 161 -2,-0.3 2,-0.0 2,-0.0 -2,-0.0 -0.960 16.1-124.2-158.6 138.0 79.8 22.8 -6.6 71 71 A H + 0 0 144 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.281 34.0 168.2 -76.1 165.8 83.1 22.3 -8.4 72 72 A H 0 0 158 1,-0.2 -2,-0.0 -2,-0.0 0, 0.0 -0.959 360.0 360.0-173.0 157.3 86.3 21.1 -6.6 73 73 A H 0 0 246 -2,-0.3 -1,-0.2 0, 0.0 -2,-0.0 0.978 360.0 360.0 -55.6 360.0 89.8 19.9 -7.1