==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 19-OCT-09 3KAT . COMPND 2 MOLECULE: NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.FOROUHAR,M.ABASHIDZE,J.SEETHARAMAN,M.MAO,R.XIAO, . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5131.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 46 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1379 A L >> 0 0 50 0, 0.0 3,-2.0 0, 0.0 4,-0.9 0.000 360.0 360.0 360.0 138.8 33.6 40.4 11.5 2 1380 A H H 3> + 0 0 119 1,-0.3 4,-3.1 2,-0.2 5,-0.2 0.510 360.0 83.6 -55.1 -2.7 33.4 36.6 11.5 3 1381 A F H 3> S+ 0 0 7 2,-0.2 4,-2.0 1,-0.2 -1,-0.3 0.905 90.8 42.5 -69.6 -42.5 36.5 37.0 9.3 4 1382 A V H <4 S+ 0 0 0 -3,-2.0 7,-0.2 59,-0.2 -1,-0.2 0.842 117.2 50.9 -70.6 -34.3 38.9 37.3 12.3 5 1383 A D H >< S+ 0 0 49 -4,-0.9 3,-1.0 2,-0.1 4,-0.3 0.945 114.3 41.1 -69.3 -48.6 37.0 34.5 13.9 6 1384 A Q H 3< S+ 0 0 109 -4,-3.1 2,-0.4 1,-0.3 3,-0.4 0.995 123.4 35.7 -64.1 -63.6 37.1 32.1 11.0 7 1385 A Y T 3X S+ 0 0 30 -4,-2.0 4,-1.1 -5,-0.2 -1,-0.3 -0.007 89.8 126.8 -81.3 34.9 40.8 32.7 9.9 8 1386 A R H X> + 0 0 84 -3,-1.0 3,-1.8 -2,-0.4 4,-1.7 0.977 67.1 40.2 -56.4 -72.0 41.6 33.1 13.6 9 1387 A E H 3> S+ 0 0 135 -3,-0.4 4,-0.8 1,-0.3 -1,-0.2 0.699 111.7 61.0 -57.6 -16.4 44.4 30.6 14.2 10 1388 A Q H 34 S+ 0 0 48 2,-0.2 -1,-0.3 1,-0.2 -2,-0.2 0.809 105.0 47.3 -78.6 -28.5 45.9 31.7 10.9 11 1389 A L H XX S+ 0 0 0 -3,-1.8 4,-2.4 -4,-1.1 3,-1.7 0.851 101.5 63.9 -78.3 -35.8 46.2 35.2 12.2 12 1390 A I H 3< S+ 0 0 4 -4,-1.7 36,-0.2 1,-0.3 37,-0.2 0.862 112.5 37.1 -55.9 -33.0 47.8 34.1 15.4 13 1391 A A T 3< S+ 0 0 57 -4,-0.8 -1,-0.3 1,-0.1 -2,-0.2 0.186 125.6 34.1-107.0 18.7 50.7 32.8 13.3 14 1392 A R T <4 S+ 0 0 137 -3,-1.7 2,-0.5 30,-0.1 -2,-0.2 0.532 77.1 108.5-143.1 -19.4 51.0 35.4 10.6 15 1393 A V < + 0 0 0 -4,-2.4 3,-0.3 1,-0.2 33,-0.1 -0.542 42.9 177.7 -67.2 116.2 50.1 38.9 12.0 16 1394 A T + 0 0 82 -2,-0.5 2,-1.9 1,-0.2 3,-0.4 0.931 64.8 52.7 -91.6 -54.7 53.5 40.6 12.1 17 1395 A S > + 0 0 54 1,-0.2 4,-1.8 2,-0.1 5,-0.2 -0.198 64.0 153.3 -81.6 53.7 53.2 44.2 13.3 18 1396 A V H > + 0 0 1 -2,-1.9 4,-1.6 -3,-0.3 -1,-0.2 0.862 67.4 56.3 -45.5 -45.6 51.3 43.1 16.4 19 1397 A E H >> S+ 0 0 124 -3,-0.4 4,-1.5 1,-0.2 3,-1.0 0.969 113.0 37.4 -52.8 -63.7 52.6 46.2 18.3 20 1398 A V H 3> S+ 0 0 53 1,-0.3 4,-0.8 2,-0.2 -1,-0.2 0.647 112.5 60.2 -65.8 -16.9 51.2 48.7 15.8 21 1399 A V H 3X S+ 0 0 0 -4,-1.8 4,-0.7 2,-0.2 -1,-0.3 0.762 108.6 43.4 -82.4 -25.3 48.1 46.6 15.2 22 1400 A L H X>S+ 0 0 2 -4,-0.7 5,-2.1 1,-0.2 3,-1.1 0.658 88.7 89.6 -75.2 -13.2 42.9 48.8 18.9 26 1404 A H T 3<5S+ 0 0 70 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.1 0.911 82.9 44.6 -49.4 -61.0 43.8 50.8 22.0 27 1405 A G T 345S+ 0 0 63 -4,-0.4 -1,-0.2 -3,-0.3 -2,-0.1 0.449 129.8 6.0 -72.3 1.2 41.1 53.5 22.2 28 1406 A Q T <45S+ 0 0 148 -3,-1.1 -2,-0.1 2,-0.2 -1,-0.1 0.570 123.0 42.6-148.8 -44.8 38.0 51.5 21.4 29 1407 A V T <5S+ 0 0 12 -4,-0.9 2,-0.4 1,-0.2 -3,-0.2 0.879 117.2 30.0 -83.3 -37.2 38.1 47.7 21.1 30 1408 A L S - 0 0 53 -2,-0.4 4,-2.5 -3,-0.1 -3,-0.1 0.062 32.3 -99.9 -67.1-178.3 40.9 48.7 27.3 32 1410 A Q H > S+ 0 0 96 2,-0.2 4,-2.0 1,-0.2 5,-0.3 0.959 123.1 50.3 -69.0 -52.7 44.1 50.0 28.8 33 1411 A E H > S+ 0 0 148 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.800 115.7 45.6 -56.0 -30.7 44.5 47.0 31.2 34 1412 A Q H > S+ 0 0 48 2,-0.2 4,-2.4 3,-0.1 5,-0.4 0.898 104.4 61.6 -77.9 -46.1 43.9 44.7 28.2 35 1413 A Y H X S+ 0 0 53 -4,-2.5 4,-1.2 1,-0.3 -2,-0.2 0.909 112.6 36.1 -47.2 -53.1 46.3 46.7 25.9 36 1414 A E H X S+ 0 0 106 -4,-2.0 4,-1.6 2,-0.2 -1,-0.3 0.780 110.7 63.4 -76.5 -23.7 49.3 45.9 28.2 37 1415 A R H X S+ 0 0 117 -4,-0.8 4,-0.6 -5,-0.3 -2,-0.2 0.945 111.7 35.5 -62.4 -49.5 48.1 42.4 29.1 38 1416 A V H < S+ 0 0 0 -4,-2.4 3,-0.3 1,-0.2 -1,-0.2 0.763 116.5 56.2 -75.0 -25.3 48.3 41.2 25.5 39 1417 A L H < S+ 0 0 43 -4,-1.2 -2,-0.2 -5,-0.4 -1,-0.2 0.753 95.0 67.5 -78.3 -22.6 51.4 43.4 25.0 40 1418 A A H < S+ 0 0 76 -4,-1.6 -1,-0.2 -3,-0.1 -2,-0.2 0.845 76.9 100.7 -65.2 -35.2 53.1 41.7 27.9 41 1419 A E < - 0 0 65 -4,-0.6 6,-0.1 -3,-0.3 -3,-0.0 -0.244 68.3-145.3 -53.1 136.1 53.3 38.4 26.0 42 1420 A N + 0 0 149 4,-0.1 -1,-0.1 5,-0.0 5,-0.0 1.000 70.0 55.4 -69.6 -73.2 56.7 38.0 24.6 43 1421 A T S > S- 0 0 83 1,-0.1 4,-1.6 4,-0.0 5,-0.2 -0.063 85.6-113.3 -61.1 163.4 56.5 36.2 21.2 44 1422 A R H > S+ 0 0 91 1,-0.2 4,-2.7 2,-0.2 5,-0.1 0.943 116.0 39.5 -65.4 -49.1 54.4 37.4 18.3 45 1423 A P H > S+ 0 0 45 0, 0.0 4,-3.0 0, 0.0 5,-0.2 0.799 110.7 59.2 -71.9 -28.3 51.8 34.6 18.3 46 1424 A S H > S+ 0 0 42 2,-0.2 4,-1.4 1,-0.2 -2,-0.2 0.902 112.6 41.0 -63.7 -40.7 51.8 34.5 22.1 47 1425 A Q H X S+ 0 0 19 -4,-1.6 4,-1.8 2,-0.2 -1,-0.2 0.936 115.8 48.9 -70.2 -50.7 50.6 38.1 21.9 48 1426 A X H X S+ 0 0 0 -4,-2.7 4,-1.6 -36,-0.2 -2,-0.2 0.874 112.7 48.2 -58.3 -40.6 48.3 37.5 19.0 49 1427 A R H X S+ 0 0 127 -4,-3.0 4,-0.9 -37,-0.2 -1,-0.2 0.856 107.2 55.8 -68.9 -37.7 46.7 34.5 20.7 50 1428 A K H X S+ 0 0 55 -4,-1.4 4,-0.6 -5,-0.2 3,-0.4 0.875 104.6 55.2 -62.2 -38.9 46.2 36.4 24.0 51 1429 A L H >< S+ 0 0 1 -4,-1.8 3,-2.0 1,-0.2 4,-0.4 0.949 103.2 52.4 -60.7 -50.8 44.3 39.0 22.0 52 1430 A F H >< S+ 0 0 7 -4,-1.6 3,-0.9 1,-0.3 -1,-0.2 0.721 95.8 71.7 -59.5 -20.2 41.8 36.5 20.6 53 1431 A S H >< S+ 0 0 70 -4,-0.9 3,-0.7 -3,-0.4 -1,-0.3 0.816 95.1 53.2 -65.2 -28.8 41.2 35.3 24.1 54 1432 A L G X< S+ 0 0 19 -3,-2.0 3,-1.4 -4,-0.6 -1,-0.3 0.666 80.9 93.5 -81.6 -13.5 39.4 38.6 24.7 55 1433 A S G X + 0 0 7 -3,-0.9 3,-1.9 -4,-0.4 -1,-0.2 0.623 53.8 98.2 -53.4 -17.1 37.1 38.1 21.7 56 1434 A Q G < S+ 0 0 181 -3,-0.7 -1,-0.3 1,-0.3 -2,-0.1 0.678 95.7 30.9 -46.5 -21.2 34.5 36.5 23.9 57 1435 A S G < S+ 0 0 82 -3,-1.4 -1,-0.3 2,-0.1 -2,-0.2 0.399 89.2 125.0-120.1 -0.1 32.8 39.9 24.0 58 1436 A W < - 0 0 21 -3,-1.9 2,-0.2 -4,-0.2 -29,-0.0 -0.352 37.2-173.5 -63.3 139.3 33.7 41.3 20.6 59 1437 A D >> - 0 0 72 -2,-0.0 4,-2.5 -58,-0.0 5,-0.7 -0.596 51.3 -73.6-121.2-177.5 30.7 42.4 18.4 60 1438 A R T 45S+ 0 0 152 1,-0.2 -2,-0.1 -2,-0.2 -58,-0.0 0.631 136.3 52.7 -56.4 -10.6 30.5 43.5 14.8 61 1439 A K T >5S+ 0 0 158 3,-0.1 4,-1.5 2,-0.1 -1,-0.2 0.864 118.3 31.5 -90.9 -43.7 32.1 46.7 16.2 62 1440 A C H >5S+ 0 0 18 -3,-0.3 4,-2.4 2,-0.2 5,-0.3 0.970 120.7 47.5 -77.4 -59.1 35.0 45.1 17.9 63 1441 A K H X5S+ 0 0 45 -4,-2.5 4,-1.1 1,-0.3 -59,-0.2 0.745 115.6 50.7 -56.2 -20.1 35.6 42.2 15.7 64 1442 A D H >X + 0 0 24 -4,-2.1 4,-0.9 -5,-0.1 3,-0.7 -0.844 61.7 177.1-132.6 100.8 49.4 44.4 6.5 75 1453 A P H 3> S+ 0 0 55 0, 0.0 4,-1.8 0, 0.0 5,-0.3 0.836 74.5 70.6 -65.9 -39.7 46.9 44.1 3.6 76 1454 A H H 3> S+ 0 0 153 1,-0.2 4,-1.2 2,-0.2 -5,-0.1 0.762 99.1 51.6 -53.2 -28.1 48.8 41.3 1.7 77 1455 A L H X> S+ 0 0 19 -3,-0.7 4,-2.3 2,-0.2 3,-0.9 0.986 111.7 40.1 -74.6 -64.8 47.8 38.8 4.5 78 1456 A I H 3X S+ 0 0 8 -4,-0.9 4,-0.8 1,-0.3 -2,-0.2 0.720 115.8 56.1 -58.3 -17.9 44.1 39.3 4.7 79 1457 A X H 3X S+ 0 0 105 -4,-1.8 4,-1.1 2,-0.2 -1,-0.3 0.844 110.2 42.9 -79.8 -35.3 44.2 39.6 0.9 80 1458 A E H