==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-JUL-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PLASMINOGEN ACTIVATION 15-JUL-93 1KDU . COMPND 2 MOLECULE: PLASMINOGEN ACTIVATOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.LI,A.M.BOKMAN,M.LLINAS,R.A.G.SMITH,C.M.DOBSON . 85 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5424.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 38.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -1 A T 0 0 164 0, 0.0 3,-0.1 0, 0.0 82,-0.1 0.000 360.0 360.0 360.0 118.4 37.4 -8.0 -3.9 2 1 A a + 0 0 45 1,-0.2 2,-1.0 80,-0.2 80,-0.2 0.682 360.0 44.2-120.4 -55.1 37.6 -4.3 -3.2 3 2 A Y S S- 0 0 26 79,-0.1 2,-1.8 58,-0.1 -1,-0.2 -0.827 75.2-153.8-100.0 98.8 37.0 -3.8 0.6 4 3 A E S S- 0 0 153 -2,-1.0 2,-0.5 -3,-0.1 3,-0.3 -0.553 72.6 -33.7 -74.3 88.1 39.1 -6.5 2.2 5 4 A G S S- 0 0 32 -2,-1.8 -2,-0.1 1,-0.2 -3,-0.1 -0.858 105.6 -53.7 101.2-130.7 37.0 -6.8 5.4 6 5 A N - 0 0 29 -2,-0.5 -1,-0.2 56,-0.1 54,-0.1 0.639 68.8-130.2-116.8 -33.2 35.4 -3.6 6.7 7 6 A G - 0 0 12 -3,-0.3 53,-0.1 55,-0.1 49,-0.1 0.807 16.6-160.0 76.9 108.4 38.4 -1.2 7.0 8 7 A H S S+ 0 0 91 47,-0.1 48,-0.3 1,-0.1 4,-0.1 0.962 89.6 6.5 -78.2 -80.4 38.9 0.7 10.3 9 8 A F S S+ 0 0 155 36,-0.1 2,-1.8 2,-0.1 3,-0.1 0.282 94.0 127.8 -88.4 8.5 41.1 3.6 9.4 10 9 A Y S S- 0 0 143 1,-0.2 -1,-0.1 2,-0.1 0, 0.0 -0.480 90.1 -73.1 -72.9 82.3 41.0 2.9 5.7 11 10 A R + 0 0 215 -2,-1.8 -1,-0.2 1,-0.1 2,-0.1 0.805 65.5 166.0 24.0 86.6 39.9 6.3 4.3 12 11 A G + 0 0 3 -3,-0.1 2,-0.7 -4,-0.1 -1,-0.1 -0.503 21.7 136.9-119.0 57.5 36.2 6.7 5.3 13 12 A K + 0 0 150 -2,-0.1 2,-0.4 40,-0.1 42,-0.1 -0.635 30.4 120.1-106.4 69.6 35.8 10.4 4.7 14 13 A A - 0 0 20 -2,-0.7 40,-2.3 40,-0.2 66,-0.1 -0.962 40.6-174.1-138.8 118.1 32.4 10.4 3.0 15 14 A S S S+ 0 0 50 -2,-0.4 2,-0.3 38,-0.2 38,-0.1 -0.209 75.3 78.0-101.7 38.6 29.3 12.2 4.2 16 15 A T - 0 0 83 6,-0.4 63,-0.5 8,-0.1 2,-0.1 -0.922 65.9-162.6-150.4 118.6 27.4 10.6 1.4 17 16 A D > - 0 0 4 4,-2.8 3,-2.1 -2,-0.3 4,-0.3 -0.455 40.8 -80.7 -98.8 173.3 26.3 6.9 1.4 18 17 A T T 3 S+ 0 0 57 59,-2.6 60,-0.1 1,-0.3 46,-0.0 0.780 126.4 51.7 -37.7 -54.3 25.1 4.5 -1.4 19 18 A M T 3 S- 0 0 129 58,-0.3 -1,-0.3 2,-0.1 59,-0.1 0.275 124.0-103.3 -75.5 13.6 21.5 5.7 -1.7 20 19 A G S < S+ 0 0 61 -3,-2.1 -2,-0.2 1,-0.2 -1,-0.1 0.779 77.7 145.3 68.8 28.0 23.1 9.2 -2.1 21 20 A R - 0 0 71 -4,-0.3 -4,-2.8 53,-0.0 -1,-0.2 -0.863 54.7-109.8 -99.6 127.0 22.0 10.0 1.5 22 21 A P - 0 0 75 0, 0.0 -6,-0.4 0, 0.0 46,-0.2 -0.346 26.7-144.2 -62.3 121.3 24.4 12.2 3.5 23 22 A b - 0 0 5 -2,-0.2 44,-0.2 44,-0.1 31,-0.1 -0.546 23.8-161.0 -82.8 148.5 26.4 10.6 6.3 24 23 A L - 0 0 31 42,-1.2 29,-0.2 -2,-0.2 42,-0.2 -0.483 25.6 -49.7-122.2-174.7 27.1 12.6 9.5 25 24 A P - 0 0 38 0, 0.0 6,-0.3 0, 0.0 3,-0.3 -0.284 35.3-152.2 -53.8 141.1 29.2 13.2 12.8 26 25 A W S S+ 0 0 0 25,-2.5 13,-0.2 1,-0.2 26,-0.1 0.866 100.4 49.2 -81.7 -44.7 29.5 10.1 15.0 27 26 A N S S+ 0 0 68 24,-0.6 -1,-0.2 10,-0.2 10,-0.1 0.140 89.4 136.4 -80.5 15.0 29.8 12.1 18.1 28 27 A S S > S- 0 0 17 -3,-0.3 4,-2.4 1,-0.1 5,-0.4 -0.305 73.9-112.4 -66.8 151.2 26.7 14.0 16.9 29 28 A A T 4 S+ 0 0 96 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.655 120.9 46.1 -58.9 -13.3 24.0 14.7 19.4 30 30 A T T > S+ 0 0 28 -5,-0.1 4,-1.0 2,-0.1 -1,-0.2 0.857 118.8 31.9 -98.8 -48.9 22.0 12.2 17.3 31 31 A V T >4 S+ 0 0 1 -6,-0.3 3,-0.9 2,-0.2 5,-0.3 0.936 113.5 61.1 -77.0 -43.3 24.4 9.3 16.7 32 32 A L T 3< S+ 0 0 54 -4,-2.4 -1,-0.2 1,-0.3 -3,-0.2 0.734 106.6 50.2 -49.5 -24.9 26.1 9.7 20.0 33 33 A Q T 34 S+ 0 0 131 -5,-0.4 -1,-0.3 3,-0.1 -2,-0.2 0.835 108.0 63.8 -80.2 -38.6 22.5 9.0 21.2 34 34 A Q S << S- 0 0 57 -4,-1.0 3,-0.1 -3,-0.9 -3,-0.1 0.525 107.7 -86.0 -61.6-148.7 22.2 5.9 19.0 35 35 A T S S+ 0 0 78 1,-0.2 2,-0.5 0, 0.0 -3,-0.1 0.612 106.4 59.0-107.1 -17.6 24.4 2.8 19.4 36 36 A Y S S+ 0 0 55 -5,-0.3 2,-0.2 -10,-0.1 -1,-0.2 -0.784 71.2 111.7-131.2 97.0 27.5 3.6 17.4 37 37 A H S > S- 0 0 10 -2,-0.5 3,-0.9 -5,-0.1 6,-0.2 -0.814 76.6 -80.2-141.8 177.9 29.6 6.7 18.3 38 39 A A T 3 S+ 0 0 17 1,-0.2 6,-0.1 -2,-0.2 -11,-0.1 0.463 108.0 81.9 -60.4 -13.3 32.8 8.1 19.6 39 40 A H T 3 S+ 0 0 130 -13,-0.2 2,-0.8 1,-0.1 -1,-0.2 0.929 75.3 66.3 -67.3 -52.5 31.6 7.4 23.1 40 41 A R S X> S- 0 0 79 -3,-0.9 3,-1.6 1,-0.2 4,-1.0 -0.674 83.3-140.0 -78.8 112.5 32.4 3.8 23.4 41 42 A S H 3> S+ 0 0 100 -2,-0.8 4,-1.2 1,-0.3 -1,-0.2 0.770 100.1 55.6 -41.5 -35.7 36.3 3.8 23.3 42 43 A D H 3> S+ 0 0 81 2,-0.2 4,-1.5 1,-0.2 -1,-0.3 0.829 91.8 68.3 -71.9 -35.4 36.3 0.7 21.1 43 44 A A H <>>S+ 0 0 0 -3,-1.6 5,-1.9 1,-0.3 4,-1.2 0.918 106.5 42.9 -48.2 -48.6 34.0 2.2 18.4 44 44AA L H <5S+ 0 0 53 -4,-1.0 3,-0.4 3,-0.3 -1,-0.3 0.892 113.3 50.8 -64.7 -42.0 36.9 4.4 17.5 45 44BA Q H <5S+ 0 0 175 -4,-1.2 -1,-0.2 1,-0.2 -2,-0.2 0.596 111.9 49.9 -72.1 -12.4 39.4 1.6 17.9 46 44CA L H <5S- 0 0 40 -4,-1.5 -1,-0.2 -3,-0.4 -2,-0.2 0.629 144.2 -59.3 -97.6 -22.8 37.1 -0.4 15.6 47 45 A G T <5S+ 0 0 8 -4,-1.2 9,-0.4 -3,-0.4 -3,-0.3 0.426 97.3 106.6 158.3 -3.9 37.0 2.4 13.0 48 46 A L < + 0 0 12 -5,-1.9 -1,-0.2 8,-0.2 -11,-0.1 -0.536 28.1 175.6-100.9 168.1 35.5 5.8 14.2 49 47 A G - 0 0 44 -2,-0.2 3,-0.1 -4,-0.0 -1,-0.1 -0.033 64.2 -88.6-161.9 46.9 37.1 9.1 15.0 50 48 A K S S+ 0 0 129 1,-0.1 -2,-0.0 3,-0.0 -13,-0.0 0.730 86.9 139.8 47.7 27.7 34.4 11.6 15.9 51 48AA H - 0 0 29 2,-0.1 -25,-2.5 -26,-0.1 -24,-0.6 0.020 64.6-119.6 -79.7-167.8 34.3 12.3 12.2 52 49 A N S S+ 0 0 66 -27,-0.3 2,-0.3 -26,-0.1 -29,-0.1 -0.458 77.2 97.6-135.8 52.4 31.1 13.0 10.2 53 50 A Y S S- 0 0 60 -29,-0.2 2,-0.4 -38,-0.1 -38,-0.2 -0.972 82.0 -83.5-149.2 158.2 31.6 10.1 7.9 54 51 A c + 0 0 0 -40,-2.3 11,-0.3 -2,-0.3 2,-0.2 -0.415 64.1 140.6 -62.8 115.0 30.9 6.5 6.9 55 52 A R B -A 64 0A 34 9,-1.8 9,-2.7 -2,-0.4 -7,-0.1 -0.504 59.8 -72.3-133.7-157.7 33.2 4.3 8.8 56 53 A N + 0 0 2 -9,-0.4 -8,-0.2 -48,-0.3 9,-0.1 -0.296 52.5 150.0-104.0 47.0 33.2 0.9 10.7 57 54 A P S S+ 0 0 0 0, 0.0 -1,-0.1 0, 0.0 -20,-0.1 0.601 90.8 12.2 -55.6 -7.3 31.1 1.2 13.9 58 55 A D S S- 0 0 59 -3,-0.1 -2,-0.1 -12,-0.1 -52,-0.1 0.558 109.3 -90.7-128.1 -75.1 30.2 -2.5 13.4 59 56 A N + 0 0 84 3,-0.1 2,-0.1 -53,-0.1 -3,-0.1 0.196 54.9 175.3 151.1 47.9 32.2 -4.5 10.8 60 57 A R - 0 0 95 -5,-0.1 -2,-0.0 1,-0.1 4,-0.0 -0.448 48.8-106.9 -73.3 149.1 30.1 -4.0 7.7 61 58 A R S S+ 0 0 175 -2,-0.1 -56,-0.2 1,-0.1 -1,-0.1 0.638 109.5 16.1 -51.1 -13.3 31.5 -5.5 4.4 62 60 A R S S- 0 0 65 -7,-0.1 -3,-0.1 -58,-0.1 16,-0.1 -0.958 107.7 -76.8-157.9 145.5 32.2 -1.8 3.6 63 61 A P - 0 0 0 0, 0.0 15,-2.4 0, 0.0 17,-0.3 -0.179 57.7-177.4 -48.4 133.4 32.3 1.4 5.7 64 62 A W E -AB 55 77A 7 -9,-2.7 -9,-1.8 13,-0.3 2,-0.3 -0.673 11.6-169.2-126.0-179.1 28.8 2.6 6.5 65 63 A b E - B 0 76A 1 11,-0.9 11,-1.9 -11,-0.3 2,-0.3 -0.972 26.9-107.2-166.7 164.4 27.0 5.4 8.3 66 64 A Y E - B 0 75A 22 -2,-0.3 -42,-1.2 9,-0.2 2,-0.5 -0.713 30.2-151.1 -97.4 150.3 23.7 6.7 9.6 67 65 A V E - B 0 74A 0 7,-0.9 7,-1.1 -2,-0.3 2,-0.3 -0.890 9.6-137.8-132.2 103.6 22.0 9.4 7.7 68 66 A Q E + B 0 73A 57 -2,-0.5 2,-0.5 5,-0.3 -37,-0.0 -0.416 28.9 175.3 -59.5 116.5 19.7 11.9 9.5 69 66AA V S S- 0 0 68 3,-1.0 -1,-0.1 -2,-0.3 -2,-0.1 -0.900 71.2 -27.7-130.2 99.6 16.8 12.3 7.2 70 67 A G S S- 0 0 80 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.971 131.5 -39.8 57.4 57.1 14.0 14.5 8.6 71 68 A L S S+ 0 0 158 1,-0.1 -1,-0.2 -3,-0.0 -3,-0.1 0.823 121.8 111.7 61.9 33.9 14.9 13.6 12.2 72 69 A K - 0 0 139 -5,-0.1 -3,-1.0 2,-0.1 2,-0.5 -0.715 53.9-159.4-140.1 87.3 15.5 10.0 11.1 73 70 A P E -B 68 0A 28 0, 0.0 2,-0.4 0, 0.0 -5,-0.3 -0.545 22.6-179.6 -67.6 117.3 19.2 8.7 11.2 74 71 A L E -B 67 0A 85 -7,-1.1 -7,-0.9 -2,-0.5 2,-0.3 -0.983 24.2-126.2-128.2 128.2 19.2 5.7 8.9 75 72 A V E +B 66 0A 47 -2,-0.4 2,-0.3 -9,-0.3 -9,-0.2 -0.549 33.7 161.2 -79.6 133.3 22.1 3.4 8.0 76 73 A Q E -B 65 0A 49 -11,-1.9 -11,-0.9 -2,-0.3 -2,-0.0 -0.969 41.8-114.8-144.3 128.3 23.0 2.9 4.4 77 74 A E E -B 64 0A 49 -2,-0.3 -59,-2.6 -13,-0.2 -58,-0.3 -0.206 39.5-100.0 -63.2 162.2 26.5 1.6 3.5 78 75 A c - 0 0 1 -15,-2.4 2,-0.7 -61,-0.3 -61,-0.2 -0.578 19.8-119.1 -89.5 153.0 28.8 3.9 1.6 79 76 A M S S+ 0 0 147 -63,-0.5 -1,-0.1 -2,-0.2 -62,-0.1 -0.077 75.5 121.3 -78.1 34.8 29.4 3.8 -2.1 80 77 A V S S- 0 0 41 -2,-0.7 2,-2.2 -17,-0.3 3,-0.4 0.209 85.8 -47.9 -79.4-158.1 33.2 3.2 -1.5 81 78 A H S S+ 0 0 137 1,-0.2 -1,-0.1 -79,-0.1 -79,-0.1 -0.324 87.1 130.5 -77.2 55.6 35.4 0.2 -2.5 82 79 A D - 0 0 26 -2,-2.2 -1,-0.2 -80,-0.2 -80,-0.2 0.610 68.1-126.6 -84.1 -16.5 32.8 -2.3 -1.4 83 80 A a - 0 0 28 -3,-0.4 2,-1.4 1,-0.2 -2,-0.1 0.999 23.8-165.2 62.5 75.5 32.8 -4.3 -4.7 84 81 A A 0 0 84 1,-0.2 -1,-0.2 -5,-0.0 -2,-0.0 -0.377 360.0 360.0 -87.3 55.9 29.1 -4.3 -5.5 85 82 A D 0 0 196 -2,-1.4 -1,-0.2 -3,-0.2 -2,-0.1 0.800 360.0 360.0 -69.1 360.0 29.6 -7.1 -8.1