==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAR-09 2KGO . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YBII; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR A.GUTMANAS,A.YEE,A.LEMAK,C.FARES,V.GUIDO,C.H.ARROWSMITH,NORT . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8369.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 43.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 27.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 21 A M 0 0 224 0, 0.0 2,-1.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 123.0 1.5 -0.2 -1.2 2 22 A A + 0 0 83 3,-0.0 2,-0.3 2,-0.0 4,-0.0 -0.587 360.0 130.6 -74.0 89.2 2.2 -3.3 -3.4 3 23 A S S S- 0 0 97 -2,-1.4 0, 0.0 1,-0.1 0, 0.0 -0.917 76.4 -2.7-147.1 116.9 6.0 -3.0 -3.8 4 24 A G S S+ 0 0 80 -2,-0.3 -1,-0.1 3,-0.1 4,-0.1 0.905 93.7 122.6 65.8 44.9 8.4 -5.9 -3.2 5 25 A W S S- 0 0 178 2,-0.0 3,-0.1 3,-0.0 -3,-0.0 0.681 93.7 -29.7-105.8 -29.4 5.5 -8.2 -2.1 6 26 A A S S+ 0 0 45 1,-0.1 2,-1.2 -4,-0.0 -4,-0.0 0.350 102.8 106.7-162.6 -31.1 5.9 -11.1 -4.6 7 27 A N + 0 0 116 4,-0.1 2,-0.3 3,-0.0 -3,-0.1 -0.570 46.9 154.4 -74.6 94.0 7.4 -9.9 -7.9 8 28 A D >> - 0 0 94 -2,-1.2 4,-1.3 1,-0.1 3,-0.7 -0.812 53.3-123.9-115.9 161.9 10.9 -11.3 -7.8 9 29 A D H 3> S+ 0 0 149 -2,-0.3 4,-1.4 1,-0.2 3,-0.1 0.910 110.9 56.8 -69.4 -42.6 13.4 -12.2 -10.5 10 30 A A H 34 S+ 0 0 89 1,-0.2 -1,-0.2 2,-0.2 -3,-0.0 0.234 115.0 38.0 -80.1 13.3 13.8 -15.8 -9.2 11 31 A V H <> S+ 0 0 71 -3,-0.7 4,-0.8 2,-0.0 3,-0.5 0.465 109.1 60.0-127.8 -24.3 10.0 -16.3 -9.6 12 32 A N H X S+ 0 0 88 -4,-1.3 4,-1.5 1,-0.2 -2,-0.2 0.760 93.0 67.8 -77.1 -26.5 9.4 -14.3 -12.9 13 33 A E H < S+ 0 0 97 -4,-1.4 6,-0.4 2,-0.2 5,-0.2 0.723 98.1 52.0 -68.1 -23.4 11.8 -16.7 -14.8 14 34 A Q H 4 S+ 0 0 120 -3,-0.5 -1,-0.2 1,-0.2 -2,-0.2 0.866 110.1 48.3 -75.2 -40.1 9.3 -19.5 -14.4 15 35 A I H < S+ 0 0 129 -4,-0.8 -2,-0.2 4,-0.1 -1,-0.2 0.768 96.4 98.6 -68.3 -26.8 6.6 -17.2 -15.8 16 36 A N S >< S- 0 0 80 -4,-1.5 3,-1.5 1,-0.1 4,-0.4 -0.308 88.7-117.6 -65.1 147.1 9.0 -16.4 -18.7 17 37 A S T 3> S+ 0 0 65 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.428 100.7 89.4 -69.0 -1.5 8.6 -18.3 -22.0 18 38 A T H 3> S+ 0 0 82 -5,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.872 87.7 49.8 -58.9 -39.1 12.1 -19.8 -21.5 19 39 A I H <> S+ 0 0 65 -3,-1.5 4,-2.3 -6,-0.4 -1,-0.2 0.921 112.8 44.0 -67.5 -45.1 10.4 -22.7 -19.6 20 40 A E H > S+ 0 0 101 -4,-0.4 4,-1.8 1,-0.2 10,-0.3 0.817 113.2 52.1 -74.3 -31.7 7.8 -23.4 -22.3 21 41 A D H X S+ 0 0 87 -4,-2.0 4,-1.5 2,-0.2 -1,-0.2 0.852 110.2 49.3 -69.2 -38.7 10.5 -23.1 -25.1 22 42 A A H X S+ 0 0 32 -4,-1.8 4,-1.4 2,-0.2 -2,-0.2 0.941 114.6 43.7 -64.0 -48.3 12.6 -25.7 -23.2 23 43 A I H X>S+ 0 0 38 -4,-2.3 4,-2.2 2,-0.2 5,-1.1 0.804 108.1 60.9 -68.4 -31.0 9.6 -28.1 -22.8 24 44 A A H <5S+ 0 0 30 -4,-1.8 4,-0.3 1,-0.2 -1,-0.2 0.902 115.8 31.3 -63.5 -44.2 8.6 -27.5 -26.5 25 45 A R H <5S+ 0 0 178 -4,-1.5 -1,-0.2 -3,-0.1 -2,-0.2 0.656 117.9 60.7 -86.3 -19.8 11.9 -28.8 -27.8 26 46 A A H <5S- 0 0 72 -4,-1.4 -2,-0.2 -5,-0.2 -3,-0.2 0.964 133.2 -11.2 -72.8 -54.8 12.2 -31.3 -24.8 27 47 A R T <5S- 0 0 162 -4,-2.2 -3,-0.2 -5,-0.1 -2,-0.1 0.437 89.9-111.1-129.4 -10.1 9.1 -33.5 -25.3 28 48 A G S - 0 0 4 5,-2.4 4,-2.0 -2,-0.4 20,-0.2 -0.301 14.7-141.6 -50.2 126.9 -9.8 -25.1 -25.7 40 60 A E T 4 S+ 0 0 114 18,-2.4 -1,-0.1 1,-0.2 19,-0.1 0.634 97.9 51.9 -69.7 -13.6 -8.0 -23.8 -22.5 41 61 A E T 4 S- 0 0 96 17,-0.4 -1,-0.2 3,-0.1 18,-0.1 0.934 134.2 -2.7 -86.2 -55.3 -11.4 -22.8 -21.0 42 62 A C T 4 S- 0 0 84 2,-0.1 -2,-0.2 18,-0.0 -3,-0.1 0.160 89.5-114.4-132.5 14.6 -13.6 -25.9 -21.2 43 63 A G < + 0 0 46 -4,-2.0 -3,-0.1 1,-0.2 3,-0.1 0.625 62.2 160.9 56.6 18.6 -11.3 -28.5 -23.0 44 64 A A - 0 0 20 1,-0.1 -5,-2.4 -6,-0.1 -1,-0.2 -0.352 51.6 -82.6 -74.2 147.2 -13.8 -28.4 -25.9 45 65 A P B -A 38 0A 116 0, 0.0 16,-0.3 0, 0.0 -7,-0.2 -0.299 41.3-143.0 -53.2 111.2 -12.8 -29.6 -29.5 46 66 A I - 0 0 16 -9,-1.2 2,-0.2 -2,-0.2 14,-0.1 -0.708 18.6-132.7 -71.0 122.5 -11.0 -26.8 -31.3 47 67 A P >> - 0 0 45 0, 0.0 4,-1.3 0, 0.0 3,-0.6 -0.546 13.1-123.9 -76.7 149.3 -12.1 -26.8 -35.1 48 68 A Q H 3> S+ 0 0 147 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.707 110.9 70.0 -60.8 -21.6 -9.4 -26.6 -37.8 49 69 A A H 3> S+ 0 0 53 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.930 102.1 40.8 -61.1 -49.7 -11.4 -23.5 -39.0 50 70 A R H <> S+ 0 0 62 -3,-0.6 4,-2.2 1,-0.2 -1,-0.2 0.806 113.7 56.6 -66.7 -32.7 -10.3 -21.5 -35.9 51 71 A R H < S+ 0 0 79 -4,-1.3 5,-0.3 2,-0.2 -16,-0.3 0.870 113.4 36.7 -68.4 -40.6 -6.7 -23.0 -36.2 52 72 A E H < S+ 0 0 140 -4,-2.1 -2,-0.2 1,-0.1 -1,-0.2 0.765 120.9 46.8 -87.0 -29.2 -6.1 -21.8 -39.8 53 73 A A H < S+ 0 0 51 -4,-1.7 -2,-0.2 1,-0.2 -3,-0.2 0.916 119.7 39.0 -72.8 -47.3 -8.0 -18.4 -39.3 54 74 A I S >< S- 0 0 45 -4,-2.2 3,-1.3 -5,-0.2 2,-1.1 -0.918 80.3-143.3-113.2 103.2 -6.3 -17.6 -36.0 55 75 A P T 3 S+ 0 0 121 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.576 94.8 13.9 -66.5 96.0 -2.5 -18.5 -35.8 56 76 A G T 3 S+ 0 0 34 -2,-1.1 2,-0.1 -5,-0.3 -21,-0.1 0.754 84.9 178.1 104.5 37.6 -2.3 -19.6 -32.1 57 77 A V < + 0 0 5 -3,-1.3 -21,-1.5 -6,-0.2 -1,-0.1 -0.452 14.5 173.2 -70.9 141.8 -6.0 -20.0 -31.2 58 78 A R + 0 0 101 -23,-0.1 -18,-2.4 -2,-0.1 -17,-0.4 0.161 55.9 79.4-133.1 12.2 -6.7 -21.3 -27.6 59 79 A L S S- 0 0 3 -20,-0.2 2,-0.1 -19,-0.1 -1,-0.0 -0.988 75.6-125.6-130.9 128.8 -10.6 -20.9 -27.6 60 80 A C > - 0 0 1 -2,-0.4 4,-2.3 -14,-0.1 3,-0.3 -0.394 45.5 -94.2 -66.7 157.3 -13.2 -23.3 -29.1 61 81 A I H > S+ 0 0 85 -16,-0.3 4,-2.0 1,-0.2 5,-0.1 0.719 127.9 51.7 -51.6 -27.4 -15.7 -21.5 -31.5 62 82 A H H > S+ 0 0 128 2,-0.2 4,-0.9 1,-0.2 -1,-0.2 0.976 117.4 34.6 -71.9 -58.0 -18.1 -21.1 -28.5 63 83 A C H > S+ 0 0 18 -3,-0.3 4,-0.8 1,-0.2 -2,-0.2 0.652 119.8 55.6 -71.0 -17.4 -15.5 -19.4 -26.1 64 84 A Q H X S+ 0 0 11 -4,-2.3 4,-2.1 2,-0.2 3,-0.4 0.937 98.3 56.2 -81.3 -49.7 -13.9 -17.7 -29.1 65 85 A Q H X S+ 0 0 120 -4,-2.0 4,-0.6 1,-0.3 -2,-0.2 0.791 108.7 49.1 -57.4 -34.0 -16.9 -15.8 -30.6 66 86 A E H X S+ 0 0 90 -4,-0.9 4,-0.7 1,-0.2 3,-0.5 0.881 113.6 45.3 -70.7 -40.3 -17.5 -14.0 -27.2 67 87 A K H X S+ 0 0 73 -4,-0.8 4,-0.7 -3,-0.4 -2,-0.2 0.727 100.9 68.5 -76.4 -24.5 -13.8 -13.0 -26.9 68 88 A D H < S+ 0 0 71 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.798 100.1 49.8 -63.0 -30.2 -13.8 -11.9 -30.6 69 89 A L H < S+ 0 0 131 -4,-0.6 -1,-0.2 -3,-0.5 -2,-0.2 0.851 107.9 53.4 -69.8 -37.7 -16.1 -9.1 -29.4 70 90 A Q H < S+ 0 0 138 -4,-0.7 -2,-0.2 3,-0.0 -1,-0.2 0.516 80.5 109.8 -82.7 -10.2 -13.7 -8.2 -26.5 71 91 A K < - 0 0 110 -4,-0.7 -3,-0.0 -3,-0.2 0, 0.0 -0.611 67.5-144.6 -64.0 120.5 -10.8 -7.9 -29.0 72 92 A P - 0 0 87 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.770 12.7-143.5 -65.6 -28.7 -10.0 -4.1 -29.0 73 93 A A S S+ 0 0 105 1,-0.2 2,-0.3 2,-0.0 -2,-0.1 0.679 75.4 66.3 64.8 22.6 -9.1 -3.9 -32.8 74 94 A Y - 0 0 174 1,-0.1 -1,-0.2 2,-0.0 0, 0.0 -0.955 56.8-163.9-154.6 168.2 -6.4 -1.3 -31.9 75 95 A T - 0 0 107 -2,-0.3 3,-0.1 -3,-0.1 -1,-0.1 0.629 11.3-162.3-117.2 -50.4 -3.1 -1.0 -29.9 76 96 A G + 0 0 75 1,-0.2 2,-0.1 0, 0.0 -2,-0.0 0.803 45.2 156.9 61.1 31.9 -2.6 2.8 -29.4 77 97 A Y - 0 0 160 2,-0.0 2,-0.2 0, 0.0 -1,-0.2 -0.367 42.0-168.5 -93.1 162.0 1.0 1.6 -28.7 78 98 A N + 0 0 135 -2,-0.1 2,-0.5 -3,-0.1 0, 0.0 -0.759 19.6 158.0-149.6 95.0 4.5 3.2 -28.8 79 99 A R - 0 0 209 -2,-0.2 2,-0.3 2,-0.1 -2,-0.0 -0.855 27.3-155.8-119.6 88.6 7.4 0.7 -28.4 80 100 A R + 0 0 237 -2,-0.5 2,-0.2 2,-0.0 -2,-0.0 -0.546 45.5 102.4 -67.3 121.4 10.5 2.5 -29.9 81 101 A G - 0 0 76 -2,-0.3 2,-0.2 2,-0.0 -2,-0.1 -0.670 56.6-127.7 164.2 142.0 13.0 -0.2 -31.1 82 102 A S + 0 0 129 -2,-0.2 2,-0.2 2,-0.0 -2,-0.0 -0.697 29.2 173.4-103.4 160.5 14.3 -2.0 -34.2 83 103 A K - 0 0 163 -2,-0.2 2,-1.1 2,-0.1 -2,-0.0 -0.867 45.6 -81.4-152.3 170.3 14.5 -5.8 -34.7 84 104 A D + 0 0 100 -2,-0.2 2,-0.2 1,-0.1 -2,-0.0 -0.827 59.7 149.1 -84.6 93.7 15.3 -8.5 -37.4 85 105 A S + 0 0 107 -2,-1.1 2,-0.2 2,-0.0 -1,-0.1 -0.713 43.6 88.1-124.3 73.5 11.9 -8.6 -39.2 86 106 A Q S S- 0 0 112 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.784 77.4-111.9-153.8-173.5 13.2 -9.5 -42.6 87 107 A L 0 0 177 -2,-0.2 -3,-0.0 1,-0.0 -2,-0.0 -0.415 360.0 360.0-138.3 55.5 14.1 -12.6 -44.9 88 108 A R 0 0 216 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.566 360.0 360.0-128.3 360.0 17.9 -12.5 -45.4