==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 19-JUN-09 2KKG . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; . AUTHOR L.M.TAUBNER,B.CAUGHEY,V.COPIE . 35 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3577.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 4 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 57 A W 0 0 272 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-172.1 13.3 -0.1 -16.2 2 58 A G + 0 0 51 2,-0.1 0, 0.0 7,-0.0 0, 0.0 0.132 360.0 150.1-166.1 30.6 12.5 -0.0 -12.5 3 59 A Q - 0 0 132 1,-0.1 2,-0.0 6,-0.1 0, 0.0 -0.329 52.3 -94.5 -71.1 154.2 14.7 -2.5 -10.7 4 60 A P - 0 0 57 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 -0.287 22.7-157.7 -68.1 153.8 15.7 -1.8 -7.0 5 61 A H S S- 0 0 190 3,-0.4 4,-0.1 2,-0.0 -2,-0.0 0.726 88.9 -0.5-101.9 -31.2 19.0 -0.1 -6.2 6 62 A G S S- 0 0 72 2,-0.4 3,-0.1 0, 0.0 2,-0.1 0.640 137.2 -19.6-126.5 -41.5 19.4 -1.3 -2.6 7 63 A G S S- 0 0 70 1,-0.7 -2,-0.0 0, 0.0 0, 0.0 -0.384 98.9 -57.9-176.4 90.3 16.5 -3.6 -1.8 8 64 A G - 0 0 16 -2,-0.1 -1,-0.7 2,-0.1 -3,-0.4 -0.044 45.6-138.6 62.3-170.8 13.2 -3.6 -3.6 9 65 A W S S- 0 0 189 -5,-0.1 -6,-0.1 -3,-0.1 -1,-0.0 0.237 77.2 -7.8-147.1 -78.6 11.0 -0.6 -3.9 10 66 A G S S+ 0 0 49 2,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.185 96.6 119.7-118.5 14.7 7.2 -0.9 -3.5 11 67 A Q - 0 0 120 1,-0.1 0, 0.0 6,-0.0 0, 0.0 -0.451 69.7 -96.2 -80.3 154.5 7.0 -4.7 -3.3 12 68 A P - 0 0 50 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 -0.196 20.6-155.0 -66.4 160.3 5.6 -6.5 -0.3 13 69 A H S S+ 0 0 190 3,-0.5 4,-0.1 2,-0.1 -2,-0.0 0.701 92.2 13.6-106.8 -31.4 7.8 -7.9 2.5 14 70 A G S S- 0 0 69 2,-0.5 3,-0.1 1,-0.0 0, 0.0 0.026 136.7 -46.9-135.1 28.1 5.6 -10.7 3.8 15 71 A G S S- 0 0 69 1,-0.1 -2,-0.1 6,-0.0 6,-0.0 0.694 101.2 -34.4 105.0 93.5 2.9 -11.0 1.2 16 72 A G - 0 0 18 2,-0.1 -2,-0.5 -4,-0.0 -3,-0.5 -0.004 55.9-139.3 59.4-171.1 1.2 -7.9 -0.2 17 73 A W S S- 0 0 190 -5,-0.1 -6,-0.0 -4,-0.1 -1,-0.0 0.239 78.1 -4.5-146.8 -78.9 0.4 -4.8 1.9 18 74 A G S S+ 0 0 52 2,-0.1 -2,-0.1 7,-0.0 7,-0.0 0.208 105.0 102.7-114.4 13.2 -2.9 -3.0 1.5 19 75 A Q S S- 0 0 115 1,-0.1 5,-0.1 6,-0.0 -2,-0.1 -0.656 79.1 -95.6 -97.4 154.5 -4.3 -5.1 -1.4 20 76 A P - 0 0 54 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 -0.329 22.2-159.8 -67.3 147.3 -6.9 -7.8 -1.1 21 77 A H S S+ 0 0 206 3,-0.4 4,-0.1 -5,-0.0 -5,-0.0 0.741 92.6 16.5 -97.3 -30.6 -5.9 -11.5 -0.8 22 78 A G S S- 0 0 84 2,-0.4 3,-0.1 0, 0.0 0, 0.0 0.665 135.7 -57.9-113.2 -27.9 -9.1 -13.0 -1.9 23 79 A G S S- 0 0 52 1,-0.5 2,-0.2 -4,-0.0 0, 0.0 0.035 100.8 -11.4 179.4 -54.5 -10.9 -10.2 -3.5 24 80 A G - 0 0 20 1,-0.1 -1,-0.5 -5,-0.1 -3,-0.4 -0.656 39.7-151.4-145.7-158.6 -11.5 -7.1 -1.3 25 81 A W S S- 0 0 190 -2,-0.2 -1,-0.1 -5,-0.1 -6,-0.0 0.244 84.7 -6.6-147.6 -77.1 -11.4 -5.8 2.2 26 82 A G S S+ 0 0 42 2,-0.1 3,-0.1 3,-0.0 -2,-0.0 0.633 102.0 104.5-106.8 -20.9 -13.7 -3.0 3.3 27 83 A Q S S- 0 0 96 1,-0.1 2,-0.1 6,-0.1 -2,-0.1 -0.187 84.2 -89.4 -60.2 154.4 -15.2 -2.2 -0.1 28 84 A P - 0 0 60 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 -0.401 29.7-164.8 -68.7 140.5 -18.8 -3.4 -0.8 29 85 A H S S+ 0 0 165 3,-0.4 4,-0.1 -2,-0.1 -2,-0.1 0.754 88.1 0.7 -94.9 -31.0 -19.2 -6.9 -2.3 30 86 A G S S- 0 0 83 2,-0.4 2,-0.1 0, 0.0 3,-0.1 0.650 137.6 -19.5-125.2 -40.8 -22.9 -6.5 -3.3 31 87 A G S S- 0 0 70 1,-0.7 -2,-0.1 0, 0.0 0, 0.0 -0.450 98.7 -54.1-177.2 96.9 -24.0 -3.0 -2.4 32 88 A G - 0 0 24 -2,-0.1 -1,-0.7 -4,-0.1 -2,-0.4 -0.010 46.6-139.6 59.6-170.7 -22.4 -0.7 0.1 33 89 A W S S- 0 0 195 -5,-0.1 -6,-0.1 -3,-0.1 -1,-0.0 0.238 71.2 -21.6-147.5 -77.8 -21.8 -1.7 3.7 34 90 A G 0 0 64 1,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.144 360.0 360.0-134.7 18.3 -22.4 0.8 6.5 35 91 A Q 0 0 201 0, 0.0 -3,-0.0 0, 0.0 -1,-0.0 0.911 360.0 360.0 -60.1 360.0 -22.3 4.1 4.7