==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 13-DEC-01 1KLV . COMPND 2 MOLECULE: GABA(A) RECEPTOR ASSOCIATED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.KOUNO,K.MIURA,M.TADA,T.KANEMATSU,S.TATE,M.SHIRAKAWA, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7580.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 62.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 14.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 18 A G > 0 0 66 0, 0.0 4,-1.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -67.1 -1.5 10.9 11.1 2 19 A E H >> + 0 0 115 1,-0.2 4,-1.2 2,-0.2 3,-0.6 0.911 360.0 44.0 -53.7 -40.0 -3.6 14.1 11.6 3 20 A K H 3> S+ 0 0 142 1,-0.2 4,-1.5 2,-0.2 5,-0.3 0.873 104.7 62.2 -74.2 -34.8 -0.5 15.9 12.7 4 21 A I H 3> S+ 0 0 52 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.680 101.9 57.0 -65.2 -12.3 1.6 14.4 9.9 5 22 A R H << S+ 0 0 94 -4,-1.0 -2,-0.2 -3,-0.6 -1,-0.2 0.960 101.3 48.3 -83.2 -60.7 -0.7 16.1 7.4 6 23 A K H < S+ 0 0 165 -4,-1.2 -2,-0.2 1,-0.2 -3,-0.1 0.890 124.9 35.3 -47.4 -39.7 -0.4 19.8 8.5 7 24 A K H < S+ 0 0 130 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.918 131.9 29.6 -82.4 -45.6 3.4 19.3 8.4 8 25 A Y >< + 0 0 100 -4,-1.4 3,-1.1 -5,-0.3 -1,-0.2 -0.475 68.4 146.2-113.6 63.7 3.5 16.9 5.5 9 26 A P T 3 S+ 0 0 80 0, 0.0 -1,-0.2 0, 0.0 -3,-0.1 0.590 74.2 57.0 -72.7 -9.6 0.5 18.0 3.4 10 27 A D T 3 S+ 0 0 122 -3,-0.2 26,-0.8 -5,-0.1 -2,-0.1 0.511 94.6 80.9 -99.0 -5.0 2.5 17.1 0.3 11 28 A R E < S-A 35 0A 107 -3,-1.1 22,-0.0 -7,-0.2 -3,-0.0 -0.206 81.2-116.8 -88.5-173.8 3.2 13.5 1.3 12 29 A V E -A 34 0A 2 22,-1.6 22,-1.8 -2,-0.0 2,-1.7 -0.866 12.2-156.1-133.6 104.0 0.8 10.5 0.9 13 30 A P E -A 33 0A 20 0, 0.0 75,-1.6 0, 0.0 20,-0.2 -0.557 24.4-169.6 -76.0 85.2 -0.5 8.8 4.1 14 31 A V E -Ab 32 88A 1 -2,-1.7 18,-0.9 18,-1.7 2,-0.2 -0.478 10.3-140.4 -77.9 150.3 -1.3 5.4 2.5 15 32 A I E -Ab 31 89A 30 73,-1.3 75,-1.0 16,-0.2 2,-0.4 -0.707 11.7-148.1-106.5 160.7 -3.3 2.8 4.5 16 33 A V E + b 0 90A 5 14,-2.2 2,-0.3 -2,-0.2 75,-0.2 -0.985 25.9 145.7-134.4 141.2 -2.6 -1.0 4.5 17 34 A E E - b 0 91A 116 73,-1.5 75,-1.4 -2,-0.4 2,-0.3 -0.943 37.4-110.1-156.6 175.0 -4.9 -4.0 4.9 18 35 A K E - b 0 92A 54 -2,-0.3 75,-0.2 73,-0.3 3,-0.2 -0.808 32.4-103.7-115.9 159.9 -5.2 -7.6 3.7 19 36 A A > - 0 0 27 73,-1.7 3,-1.3 -2,-0.3 2,-0.7 0.043 65.8 -57.7 -65.0-174.3 -7.8 -9.2 1.4 20 37 A P T 3 S- 0 0 123 0, 0.0 -1,-0.2 0, 0.0 73,-0.0 -0.556 124.4 -13.7 -71.3 110.4 -10.5 -11.5 2.7 21 38 A K T 3 S- 0 0 201 -2,-0.7 -2,-0.1 -3,-0.2 72,-0.0 0.930 93.5-173.4 64.2 42.9 -8.7 -14.3 4.6 22 39 A A < - 0 0 28 -3,-1.3 71,-0.1 1,-0.1 -4,-0.1 0.070 18.6-152.5 -57.5-179.8 -5.4 -13.3 3.1 23 40 A R + 0 0 168 3,-0.0 2,-0.1 72,-0.0 -1,-0.1 0.023 45.9 121.9-150.1 35.1 -2.3 -15.6 3.7 24 41 A I S S- 0 0 21 1,-0.2 28,-0.1 68,-0.2 3,-0.1 -0.397 71.4 -67.7 -95.1 176.2 0.8 -13.5 3.5 25 42 A G - 0 0 23 26,-1.3 -1,-0.2 -2,-0.1 27,-0.2 0.192 67.9 -80.5 -49.1-177.7 3.5 -12.9 6.1 26 43 A D - 0 0 122 -3,-0.1 2,-0.4 26,-0.0 -1,-0.1 -0.179 42.8-126.2 -79.8-179.0 2.6 -10.9 9.3 27 44 A L - 0 0 37 1,-0.1 3,-0.1 24,-0.1 24,-0.1 -0.988 17.5-169.2-135.6 131.9 2.5 -7.1 9.4 28 45 A D S S+ 0 0 96 -2,-0.4 2,-0.3 1,-0.3 -1,-0.1 0.790 81.6 2.8 -86.8 -28.7 4.2 -4.7 11.8 29 46 A K - 0 0 126 21,-0.1 -1,-0.3 1,-0.0 3,-0.1 -0.993 52.4-149.8-152.7 157.0 2.2 -1.7 10.7 30 47 A K S S+ 0 0 136 -2,-0.3 -14,-2.2 1,-0.1 2,-0.2 -0.189 77.1 70.3-123.9 43.2 -0.6 -0.9 8.3 31 48 A K E -A 15 0A 143 -16,-0.3 2,-0.4 2,-0.0 -16,-0.2 -0.753 56.8-170.3-159.7 107.6 0.2 2.7 7.4 32 49 A Y E -A 14 0A 24 -18,-0.9 -18,-1.7 -2,-0.2 2,-0.9 -0.818 16.9-143.4-103.8 142.2 3.2 3.8 5.2 33 50 A L E +A 13 0A 102 -2,-0.4 -2,-0.0 -20,-0.2 -18,-0.0 -0.803 35.6 163.2-102.2 95.7 4.2 7.5 4.7 34 51 A V E -A 12 0A 4 -22,-1.8 -22,-1.6 -2,-0.9 2,-0.1 -0.914 39.2-112.9-118.5 145.3 5.4 7.7 1.1 35 52 A P E > -A 11 0A 46 0, 0.0 3,-1.8 0, 0.0 40,-0.5 -0.368 27.6-119.2 -70.2 147.6 5.9 10.8 -1.1 36 53 A S T 3 S+ 0 0 47 -26,-0.8 39,-0.9 1,-0.3 40,-0.6 0.699 111.9 63.9 -62.8 -16.0 3.4 11.3 -4.0 37 54 A D T 3 S+ 0 0 141 38,-0.2 -1,-0.3 37,-0.1 -26,-0.0 0.653 77.2 109.9 -83.6 -13.7 6.5 11.1 -6.4 38 55 A L < - 0 0 32 -3,-1.8 36,-1.8 35,-0.1 37,-0.5 -0.321 66.1-131.4 -62.4 143.6 7.3 7.5 -5.4 39 56 A T B >> -D 73 0B 59 34,-0.3 4,-1.8 35,-0.1 3,-1.0 -0.515 24.5-106.6 -91.1 162.8 6.6 4.9 -8.2 40 57 A V H 3> S+ 0 0 26 32,-1.9 4,-2.1 1,-0.3 5,-0.1 0.799 120.4 63.1 -59.9 -23.7 4.7 1.6 -7.6 41 58 A G H 34 S+ 0 0 33 29,-0.5 4,-0.5 31,-0.3 -1,-0.3 0.872 103.1 47.3 -70.3 -34.0 8.1 -0.1 -7.8 42 59 A Q H X> S+ 0 0 111 -3,-1.0 4,-1.6 2,-0.2 3,-1.1 0.948 113.0 46.7 -73.4 -47.0 9.4 1.7 -4.7 43 60 A F H 3X S+ 0 0 5 -4,-1.8 4,-1.8 1,-0.3 5,-0.4 0.960 103.7 61.8 -60.9 -46.8 6.3 1.0 -2.6 44 61 A Y H 3X S+ 0 0 51 -4,-2.1 4,-1.3 1,-0.2 -1,-0.3 0.789 105.4 52.7 -50.7 -21.7 6.3 -2.6 -3.6 45 62 A F H <> S+ 0 0 136 -3,-1.1 4,-1.1 -4,-0.5 5,-0.3 0.955 104.0 49.6 -80.7 -54.8 9.7 -2.7 -1.9 46 63 A L H < S+ 0 0 52 -4,-1.6 4,-0.4 1,-0.2 -2,-0.2 0.777 119.0 41.4 -60.1 -19.9 8.8 -1.2 1.5 47 64 A I H X S+ 0 0 2 -4,-1.8 4,-1.7 2,-0.1 5,-0.2 0.857 98.2 74.4 -92.8 -38.9 5.9 -3.6 1.8 48 65 A R H ><>S+ 0 0 112 -4,-1.3 5,-1.5 -5,-0.4 3,-1.2 0.904 106.1 35.9 -37.0 -61.4 7.7 -6.7 0.5 49 66 A K G ><5S+ 0 0 128 -4,-1.1 3,-1.8 1,-0.3 -1,-0.3 0.870 112.7 60.9 -65.2 -32.3 9.8 -7.1 3.7 50 67 A R G 345S+ 0 0 90 -4,-0.4 -22,-0.3 -5,-0.3 -1,-0.3 0.708 102.0 54.0 -68.0 -14.8 6.7 -6.0 5.7 51 68 A I G <<5S- 0 0 0 -4,-1.7 -26,-1.3 -3,-1.2 -1,-0.3 0.298 109.8-123.7-100.2 10.2 4.9 -9.0 4.3 52 69 A H T < 5S+ 0 0 157 -3,-1.8 2,-0.3 -5,-0.2 -3,-0.2 0.853 70.5 131.0 52.7 32.8 7.6 -11.4 5.5 53 70 A L < + 0 0 15 -5,-1.5 2,-0.3 -28,-0.1 -1,-0.2 -0.842 23.2 143.2-116.0 154.0 7.9 -12.6 1.8 54 71 A R > + 0 0 185 -2,-0.3 3,-2.2 -3,-0.1 2,-1.5 -0.952 46.1 37.5-166.4-173.6 11.0 -13.0 -0.3 55 72 A A T 3 S- 0 0 98 -2,-0.3 -2,-0.0 1,-0.3 0, 0.0 -0.307 130.5 -28.0 57.0 -88.9 12.8 -15.1 -3.0 56 73 A E T 3 S+ 0 0 179 -2,-1.5 -1,-0.3 2,-0.0 -3,-0.0 0.138 87.8 151.1-146.0 24.2 9.7 -15.8 -5.1 57 74 A D < - 0 0 62 -3,-2.2 2,-0.4 1,-0.1 -4,-0.1 0.114 48.9-104.0 -49.1 176.9 6.7 -15.7 -2.8 58 75 A A + 0 0 35 36,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.886 50.2 147.9-111.3 139.6 3.3 -14.7 -4.3 59 76 A L - 0 0 17 -2,-0.4 2,-0.3 35,-0.1 35,-0.2 -0.983 19.5-174.5-164.8 153.7 1.7 -11.3 -3.7 60 77 A F E -C 93 0A 68 33,-1.4 33,-1.3 -2,-0.3 2,-0.4 -0.880 20.0-137.3-157.7 120.7 -0.6 -8.8 -5.5 61 78 A F E -C 92 0A 17 -2,-0.3 2,-0.5 31,-0.2 31,-0.2 -0.638 16.8-166.5 -82.8 133.6 -1.6 -5.3 -4.4 62 79 A F E -C 91 0A 71 29,-2.4 29,-1.8 -2,-0.4 2,-0.5 -0.958 6.8-178.9-120.7 119.4 -5.3 -4.4 -4.9 63 80 A V B > S-E 66 0C 17 3,-1.7 3,-0.8 -2,-0.5 27,-0.1 -0.960 72.4 -17.9-120.7 128.4 -6.3 -0.7 -4.6 64 81 A N T 3 S- 0 0 60 -2,-0.5 -1,-0.2 25,-0.4 3,-0.1 0.881 129.0 -54.5 48.1 36.6 -9.9 0.5 -5.0 65 82 A N T 3 S+ 0 0 154 1,-0.2 2,-0.3 -3,-0.1 -1,-0.3 0.899 117.8 113.6 66.7 38.6 -10.5 -2.9 -6.8 66 83 A V B < -E 63 0C 53 -3,-0.8 -3,-1.7 2,-0.0 -1,-0.2 -0.899 48.1-166.9-135.7 166.9 -7.7 -2.3 -9.2 67 84 A I + 0 0 104 -2,-0.3 -5,-0.1 -5,-0.2 -3,-0.0 -0.389 21.1 174.7-155.2 67.7 -4.3 -3.8 -10.0 68 85 A P - 0 0 68 0, 0.0 -7,-0.1 0, 0.0 4,-0.1 -0.253 35.1 -98.7 -73.5 164.6 -2.2 -1.6 -12.3 69 86 A P - 0 0 93 0, 0.0 3,-0.1 0, 0.0 -29,-0.1 -0.023 43.1 -91.6 -72.6-178.3 1.4 -2.3 -13.3 70 87 A T S S+ 0 0 85 1,-0.2 -29,-0.5 -30,-0.1 2,-0.2 0.197 101.4 101.0 -84.3 21.4 4.4 -0.6 -11.7 71 88 A S S S+ 0 0 114 -31,-0.1 2,-0.2 -32,-0.1 -1,-0.2 -0.190 73.8 66.3 -97.0 43.2 4.3 2.1 -14.3 72 89 A A S S- 0 0 14 -2,-0.2 -32,-1.9 -3,-0.1 2,-0.3 -0.791 74.1-118.6-145.0-172.1 2.6 4.6 -11.9 73 90 A T B > -D 39 0B 38 -34,-0.3 4,-1.5 -2,-0.2 -34,-0.3 -0.993 16.9-129.0-139.3 145.7 3.2 6.5 -8.7 74 91 A M H > S+ 0 0 9 -36,-1.8 4,-1.3 -2,-0.3 3,-0.4 0.942 108.2 61.7 -58.9 -45.0 1.5 6.5 -5.3 75 92 A G H >> S+ 0 0 9 -39,-0.9 3,-0.9 -37,-0.5 4,-0.6 0.924 104.4 47.9 -48.1 -47.7 1.1 10.3 -5.4 76 93 A Q H >> S+ 0 0 114 -40,-0.6 4,-0.7 1,-0.3 3,-0.5 0.875 105.2 60.0 -64.5 -32.9 -1.1 10.0 -8.5 77 94 A L H 3X S+ 0 0 16 -4,-1.5 4,-2.0 -3,-0.4 3,-0.5 0.773 85.3 81.3 -66.2 -22.2 -3.1 7.3 -6.7 78 95 A Y H << S+ 0 0 66 -4,-1.3 4,-0.5 -3,-0.9 -1,-0.2 0.959 97.9 38.2 -49.2 -55.1 -4.0 9.8 -4.1 79 96 A Q H << S+ 0 0 157 -4,-0.6 -1,-0.3 -3,-0.5 -2,-0.2 0.726 123.0 47.7 -69.5 -18.6 -6.8 11.3 -6.2 80 97 A E H < S+ 0 0 112 -4,-0.7 3,-0.4 -3,-0.5 -2,-0.2 0.950 125.8 16.2 -87.3 -68.7 -7.7 7.7 -7.4 81 98 A H S < S+ 0 0 12 -4,-2.0 8,-1.8 1,-0.2 3,-0.3 -0.080 76.0 133.5 -99.4 38.2 -7.9 5.4 -4.4 82 99 A H + 0 0 93 -4,-0.5 2,-0.8 1,-0.2 4,-0.4 0.799 31.4 169.6 -56.6 -22.1 -8.2 8.1 -1.7 83 100 A E + 0 0 90 -3,-0.4 -1,-0.2 5,-0.1 5,-0.1 -0.180 56.4 46.6 46.5 -92.4 -11.0 5.9 -0.4 84 101 A E S S- 0 0 88 -2,-0.8 2,-1.8 3,-0.3 5,-0.1 -0.270 100.9-103.9 -71.3 163.5 -11.4 7.7 3.0 85 102 A D S S+ 0 0 141 1,-0.1 -1,-0.1 3,-0.0 3,-0.1 -0.356 112.4 24.9 -85.4 60.7 -11.6 11.5 3.1 86 103 A F S S+ 0 0 80 -2,-1.8 2,-0.2 1,-0.7 -1,-0.1 0.002 121.6 24.0-179.4 -57.3 -8.0 11.9 4.4 87 104 A F S S- 0 0 54 -5,-0.2 -1,-0.7 -75,-0.1 -3,-0.3 -0.620 75.4-108.8-119.2-178.4 -5.7 9.0 3.6 88 105 A L E -b 14 0A 0 -75,-1.6 -73,-1.3 -2,-0.2 2,-0.5 -0.684 23.8-131.0-109.6 165.7 -5.7 6.3 0.8 89 106 A Y E +b 15 0A 70 -8,-1.8 -25,-0.4 -2,-0.2 2,-0.4 -0.956 27.3 166.1-122.8 128.9 -6.4 2.5 1.1 90 107 A I E +b 16 0A 8 -75,-1.0 -73,-1.5 -2,-0.5 2,-0.2 -0.983 5.5 175.9-140.0 128.6 -4.3 -0.3 -0.2 91 108 A A E -bC 17 62A 23 -29,-1.8 -29,-2.4 -2,-0.4 2,-0.3 -0.759 8.8-158.7-123.7 172.8 -4.5 -4.1 0.6 92 109 A Y E -bC 18 61A 1 -75,-1.4 -73,-1.7 -31,-0.2 2,-0.3 -0.980 6.7-173.9-149.9 163.1 -2.7 -7.2 -0.7 93 110 A S E - C 0 60A 8 -33,-1.3 -33,-1.4 -2,-0.3 -71,-0.1 -0.874 30.8-122.9-146.5 179.5 -3.0 -11.0 -0.9 94 111 A D S S+ 0 0 17 -2,-0.3 2,-0.3 -35,-0.2 -35,-0.1 -0.108 73.4 102.2-121.3 36.6 -1.1 -14.1 -2.0 95 112 A E + 0 0 128 -35,-0.1 -2,-0.1 1,-0.1 -36,-0.0 -0.893 27.3 160.1-120.9 152.0 -3.5 -15.6 -4.6 96 113 A S + 0 0 82 -2,-0.3 3,-0.1 -38,-0.0 -1,-0.1 0.034 17.5 171.1-158.1 34.8 -3.4 -15.5 -8.4 97 114 A V - 0 0 137 1,-0.1 2,-0.7 0, 0.0 -2,-0.0 0.098 42.6-102.6 -43.5 167.7 -5.7 -18.3 -9.6 98 115 A Y - 0 0 208 2,-0.0 -1,-0.1 1,-0.0 -2,-0.0 -0.851 32.6-132.7-103.4 110.2 -6.3 -18.3 -13.4 99 116 A G 0 0 55 -2,-0.7 -3,-0.0 1,-0.1 -1,-0.0 -0.088 360.0 360.0 -52.5 159.0 -9.8 -17.0 -14.3 100 117 A L 0 0 245 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.110 360.0 360.0 -93.7 360.0 -11.7 -19.1 -16.8