==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 29-JUN-09 2KL1 . COMPND 2 MOLECULE: YLBL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; . AUTHOR H.LEE,H.WANG,C.CICCOSANTI,M.JIANG,R.NAIR,B.ROST,T.B.ACTON,R. . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6655.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 56.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 24.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 230 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 31.6 -16.4 -16.1 -1.3 2 2 A N - 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.014 360.0 -83.1-161.4 36.9 -15.5 -16.9 2.3 3 3 A E - 0 0 158 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.982 50.1-170.5 53.7 78.3 -15.5 -13.7 4.2 4 4 A A - 0 0 72 0, 0.0 -1,-0.0 0, 0.0 25,-0.0 0.984 5.3-175.1 -61.5 -63.8 -12.0 -12.4 3.5 5 5 A K + 0 0 128 2,-0.0 3,-0.0 0, 0.0 24,-0.0 0.978 22.8 142.8 59.9 86.7 -11.9 -9.4 5.9 6 6 A G - 0 0 28 1,-0.1 2,-0.3 24,-0.0 23,-0.1 0.449 54.9 -37.5-115.5-105.6 -8.6 -7.7 5.2 7 7 A V E -A 28 0A 39 21,-0.6 21,-1.7 29,-0.1 2,-0.5 -0.989 44.7-135.2-135.2 142.7 -8.0 -3.9 5.3 8 8 A Y E -A 27 0A 163 -2,-0.3 19,-0.2 19,-0.2 18,-0.1 -0.869 30.9-113.9-102.3 123.1 -10.2 -0.9 4.2 9 9 A V - 0 0 22 17,-1.7 -1,-0.1 -2,-0.5 3,-0.1 0.100 20.3-149.5 -45.7 164.9 -8.5 1.8 2.2 10 10 A M - 0 0 135 1,-0.4 2,-0.3 14,-0.0 -1,-0.1 0.821 52.0 -42.4-104.9 -70.3 -8.2 5.3 3.8 11 11 A S - 0 0 62 76,-0.3 2,-0.6 13,-0.1 -1,-0.4 -0.943 43.9-109.4-156.2 175.3 -8.3 8.1 1.2 12 12 A V - 0 0 42 -2,-0.3 11,-0.0 -3,-0.1 12,-0.0 -0.940 32.9-166.9-118.8 105.9 -7.1 9.3 -2.2 13 13 A L > - 0 0 60 74,-0.6 3,-0.7 -2,-0.6 6,-0.3 -0.709 23.0-112.6 -93.7 144.0 -4.6 12.1 -2.0 14 14 A P T 3 S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.329 95.9 22.4 -72.9 156.4 -3.6 14.2 -5.2 15 15 A N T 3 S+ 0 0 168 1,-0.2 -2,-0.0 2,-0.0 0, 0.0 0.814 98.3 124.9 58.1 32.4 -0.1 14.1 -6.7 16 16 A M S X S- 0 0 79 -3,-0.7 3,-1.0 1,-0.1 -1,-0.2 -0.886 73.4-120.6-122.3 152.4 0.4 10.6 -5.0 17 17 A P T 3 S+ 0 0 46 0, 0.0 52,-0.2 0, 0.0 4,-0.1 0.680 113.6 57.4 -64.0 -16.9 1.4 7.2 -6.6 18 18 A A T >> S+ 0 0 4 -5,-0.1 4,-3.6 3,-0.1 3,-1.2 0.723 83.4 100.6 -85.4 -24.0 -1.8 5.7 -5.2 19 19 A A B <4 S+e 22 0B 38 -3,-1.0 4,-0.1 -6,-0.3 -7,-0.0 -0.440 91.9 13.3 -66.6 131.1 -4.0 8.3 -7.1 20 20 A G T 34 S+ 0 0 76 2,-0.5 -1,-0.2 -2,-0.2 3,-0.1 0.105 130.2 55.6 91.0 -21.2 -5.5 6.8 -10.3 21 21 A R T <4 S+ 0 0 114 -3,-1.2 2,-0.4 1,-0.3 -2,-0.2 0.766 110.1 36.0-106.6 -43.9 -4.6 3.3 -9.2 22 22 A L B < -e 19 0B 2 -4,-3.6 -2,-0.5 -11,-0.0 -1,-0.3 -0.919 68.9-172.9-116.3 140.5 -6.2 3.0 -5.8 23 23 A E > - 0 0 69 -2,-0.4 3,-1.7 -4,-0.1 -14,-0.2 -0.908 35.3 -86.9-131.5 159.2 -9.6 4.6 -4.8 24 24 A A T 3 S+ 0 0 56 -2,-0.3 3,-0.1 1,-0.2 -13,-0.1 -0.424 112.6 35.4 -65.6 133.3 -11.6 5.0 -1.6 25 25 A G T 3 S+ 0 0 66 1,-0.4 -1,-0.2 -2,-0.1 2,-0.2 0.034 89.8 116.5 110.1 -23.1 -13.8 1.9 -0.9 26 26 A D < - 0 0 7 -3,-1.7 -17,-1.7 -18,-0.1 -1,-0.4 -0.537 52.8-147.5 -79.4 144.5 -11.3 -0.6 -2.3 27 27 A R E -AB 8 60A 105 33,-1.0 33,-1.3 -2,-0.2 2,-0.7 -0.728 16.4-113.3-110.3 161.4 -9.8 -3.2 0.1 28 28 A I E +AB 7 59A 22 -21,-1.7 -21,-0.6 -2,-0.2 31,-0.2 -0.839 29.3 174.2 -98.0 115.1 -6.4 -4.9 0.1 29 29 A A E - 0 0 49 29,-0.9 7,-0.3 -2,-0.7 2,-0.3 0.615 69.0 -25.0 -91.9 -14.9 -6.5 -8.6 -0.7 30 30 A A E - B 0 58A 17 28,-1.3 28,-2.6 5,-0.2 2,-0.4 -0.955 53.6-125.6 177.9 168.1 -2.7 -8.9 -0.7 31 31 A I E > S-CB 34 57A 9 3,-2.7 3,-4.2 -2,-0.3 26,-0.3 -0.988 86.6 -22.9-137.0 125.9 0.7 -7.2 -1.2 32 32 A D T 3 S- 0 0 68 24,-2.9 25,-0.1 -2,-0.4 -1,-0.0 0.723 130.9 -49.6 47.8 22.9 3.4 -8.3 -3.6 33 33 A G T 3 S+ 0 0 59 1,-0.3 -1,-0.3 23,-0.2 24,-0.1 0.303 113.4 125.0 100.8 -6.9 1.7 -11.7 -3.3 34 34 A Q B < -C 31 0A 103 -3,-4.2 -3,-2.7 1,-0.0 2,-0.4 -0.738 61.3-127.7 -87.4 126.4 1.6 -11.7 0.5 35 35 A P - 0 0 104 0, 0.0 2,-0.6 0, 0.0 -5,-0.2 -0.598 20.3-146.7 -77.5 126.7 -1.9 -12.2 2.2 36 36 A I + 0 0 14 -2,-0.4 3,-0.1 -7,-0.3 -29,-0.1 -0.849 36.1 151.6-100.6 120.4 -2.8 -9.4 4.7 37 37 A N + 0 0 125 -2,-0.6 2,-0.3 1,-0.2 -1,-0.1 0.539 67.2 40.5-116.1 -19.3 -4.9 -10.4 7.7 38 38 A T > - 0 0 58 1,-0.1 4,-0.5 -31,-0.0 -1,-0.2 -0.942 69.7-131.4-133.3 155.9 -3.6 -7.7 10.2 39 39 A S H >> S+ 0 0 75 -2,-0.3 3,-0.8 1,-0.2 4,-0.7 0.826 109.4 60.0 -71.7 -32.3 -2.7 -4.1 10.1 40 40 A E H >> S+ 0 0 130 1,-0.3 4,-1.4 2,-0.2 3,-0.8 0.831 92.2 66.2 -65.0 -32.4 0.6 -4.9 11.9 41 41 A Q H 3> S+ 0 0 91 1,-0.3 4,-1.6 2,-0.2 -1,-0.3 0.833 98.2 54.9 -58.9 -30.3 1.6 -7.2 9.1 42 42 A I H - 0 0 112 -2,-0.2 3,-1.5 1,-0.1 22,-0.3 -0.491 38.1 -58.4-113.5-176.2 13.0 1.9 2.5 51 51 A A T 3 S+ 0 0 52 1,-0.2 22,-0.2 -2,-0.2 -1,-0.1 -0.402 122.8 27.0 -66.7 138.9 12.2 5.3 0.9 52 52 A G T 3 S+ 0 0 64 20,-2.5 -1,-0.2 1,-0.2 21,-0.1 0.452 94.7 133.9 88.4 0.9 12.3 5.3 -2.9 53 53 A D < - 0 0 37 -3,-1.5 19,-0.5 19,-0.2 2,-0.4 -0.092 50.9-130.9 -74.7 179.6 11.3 1.6 -2.9 54 54 A R - 0 0 124 17,-0.2 2,-0.4 -3,-0.1 17,-0.2 -0.983 22.8-179.2-139.6 123.4 8.6 0.0 -5.1 55 55 A V E - D 0 70A 7 15,-2.6 15,-2.1 -2,-0.4 2,-0.5 -0.985 22.9-135.7-129.9 134.6 5.9 -2.3 -3.8 56 56 A R E - D 0 69A 117 -2,-0.4 -24,-2.9 13,-0.2 2,-0.4 -0.759 24.2-166.0 -88.5 122.6 3.2 -4.1 -5.7 57 57 A V E -BD 31 68A 14 11,-2.8 11,-3.8 -2,-0.5 2,-0.4 -0.946 8.1-147.7-116.2 130.3 -0.2 -3.9 -3.9 58 58 A T E +BD 30 67A 29 -28,-2.6 -28,-1.3 -2,-0.4 -29,-0.9 -0.790 23.7 166.4 -96.9 136.1 -3.2 -6.1 -4.7 59 59 A F E -BD 28 66A 12 7,-2.0 7,-2.7 -2,-0.4 2,-0.4 -0.989 25.9-134.9-146.6 151.3 -6.8 -4.7 -4.3 60 60 A I E -BD 27 65A 26 -33,-1.3 -33,-1.0 -2,-0.3 2,-0.4 -0.909 18.3-179.2-112.6 137.2 -10.3 -5.8 -5.4 61 61 A R E > S- D 0 64A 84 3,-1.4 3,-2.5 -2,-0.4 -35,-0.1 -0.975 73.3 -21.5-136.7 120.5 -13.0 -3.5 -6.8 62 62 A D T 3 S- 0 0 142 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.867 127.5 -52.4 50.0 39.4 -16.4 -4.6 -7.9 63 63 A R T 3 S+ 0 0 239 1,-0.2 2,-0.7 0, 0.0 -1,-0.3 0.615 115.1 123.7 73.3 12.6 -15.1 -8.1 -8.2 64 64 A K E < -D 61 0A 122 -3,-2.5 -3,-1.4 2,-0.0 2,-0.3 -0.873 53.0-150.1-110.7 100.2 -12.3 -6.8 -10.4 65 65 A Q E +D 60 0A 151 -2,-0.7 2,-0.3 -5,-0.2 -5,-0.2 -0.520 25.0 167.6 -72.2 127.6 -8.8 -7.6 -9.0 66 66 A H E -D 59 0A 93 -7,-2.7 -7,-2.0 -2,-0.3 2,-0.3 -0.999 29.2-128.9-145.1 141.2 -6.1 -5.1 -9.9 67 67 A E E -D 58 0A 143 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.632 18.3-151.4 -90.0 146.2 -2.6 -4.4 -8.8 68 68 A A E -D 57 0A 1 -11,-3.8 -11,-2.8 -2,-0.3 2,-0.9 -0.972 9.1-139.4-123.0 130.9 -1.4 -0.9 -7.6 69 69 A E E +D 56 0A 58 -2,-0.4 2,-0.3 -13,-0.2 -13,-0.2 -0.783 29.8 176.8 -92.2 105.4 2.2 0.4 -7.9 70 70 A L E -D 55 0A 27 -15,-2.1 -15,-2.6 -2,-0.9 2,-0.4 -0.847 18.4-147.3-111.3 146.3 3.0 2.3 -4.7 71 71 A V - 0 0 46 -2,-0.3 -17,-0.2 -17,-0.2 2,-0.2 -0.948 22.6-117.5-115.9 130.2 6.3 4.0 -3.8 72 72 A L + 0 0 12 -19,-0.5 -20,-2.5 -2,-0.4 -19,-0.2 -0.429 37.6 177.8 -66.1 132.9 7.5 4.2 -0.2 73 73 A K - 0 0 118 -22,-0.2 10,-1.1 -2,-0.2 -22,-0.0 -0.999 25.6-118.2-139.5 140.4 7.9 7.8 1.0 74 74 A P B -F 82 0C 70 0, 0.0 8,-0.2 0, 0.0 6,-0.1 -0.281 24.2-135.8 -73.8 162.1 9.0 9.3 4.5 75 75 A F - 0 0 50 6,-0.8 3,-0.4 3,-0.7 6,-0.3 -0.922 11.7-133.6-120.8 145.8 6.7 11.5 6.6 76 76 A P S S+ 0 0 112 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.809 108.1 59.0 -66.5 -28.1 7.6 14.8 8.6 77 77 A H S S+ 0 0 151 1,-0.3 3,-0.1 2,-0.1 0, 0.0 0.844 129.7 9.6 -68.4 -33.4 5.8 13.4 11.6 78 78 A H > + 0 0 94 -3,-0.4 3,-2.0 3,-0.2 -3,-0.7 -0.557 66.6 171.8-147.5 74.8 8.2 10.4 11.7 79 79 A P T 3 S+ 0 0 83 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.794 82.8 62.8 -54.8 -29.8 11.1 10.8 9.2 80 80 A N T 3 S+ 0 0 159 -4,-0.1 2,-0.4 -3,-0.1 -3,-0.0 0.194 97.3 75.2 -83.0 17.3 12.6 7.7 10.7 81 81 A Q < - 0 0 84 -3,-2.0 -6,-0.8 -6,-0.3 2,-0.4 -0.992 65.2-157.5-133.3 138.9 9.5 5.8 9.5 82 82 A I B -F 74 0C 42 -2,-0.4 -33,-0.1 1,-0.3 -10,-0.1 -0.957 64.8 -7.9-118.6 133.5 8.7 4.6 6.0 83 83 A G - 0 0 10 -10,-1.1 -1,-0.3 -2,-0.4 -37,-0.1 0.888 51.0-165.5 49.5 106.3 5.1 3.9 4.8 84 84 A L - 0 0 98 -3,-0.1 -1,-0.1 -38,-0.1 -41,-0.1 0.394 61.0 -89.1 -97.5 0.7 2.6 3.9 7.6 85 85 A G S S+ 0 0 41 1,-0.2 2,-0.3 -43,-0.1 -42,-0.1 0.860 76.7 152.8 91.8 47.9 0.1 2.1 5.3 86 86 A V 0 0 67 -76,-0.1 -1,-0.2 -77,-0.1 -77,-0.1 -0.806 360.0 360.0-108.7 149.2 -1.6 5.1 3.7 87 87 A T 0 0 16 -2,-0.3 -74,-0.6 -76,-0.1 -76,-0.3 -0.817 360.0 360.0-100.4 360.0 -3.2 5.3 0.2