==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-MAY-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 10-MAY-10 2KXN . COMPND 2 MOLECULE: 5'-R(*AP*AP*GP*AP*AP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.CLERY,S.JAYNE,N.BENDERSKA,C.DOMINGUEZ,S.STAMM,F.H.-T.ALLAI . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7165.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 45.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 13.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 14.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 106 B R 0 0 307 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 165.9 9.4 -0.1 6.4 2 107 B H - 0 0 176 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.950 360.0-158.9-152.2 166.3 7.4 0.8 3.2 3 108 B V - 0 0 111 -2,-0.3 3,-0.1 1,-0.0 0, 0.0 -0.874 18.6-178.0-144.3 172.5 7.6 0.5 -0.6 4 109 B G + 0 0 82 -2,-0.3 2,-0.3 1,-0.1 -1,-0.0 0.218 67.3 54.9-160.7 13.5 6.2 2.1 -3.8 5 110 B N - 0 0 90 1,-0.1 -1,-0.1 85,-0.0 3,-0.1 -0.874 48.5-158.6-146.5 176.1 7.7 -0.0 -6.6 6 111 B R S S+ 0 0 217 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.358 77.4 18.9-138.3 -8.2 8.1 -3.6 -8.0 7 112 B A S S- 0 0 36 0, 0.0 -1,-0.2 0, 0.0 84,-0.1 -0.895 105.7 -35.0-156.5-179.6 11.1 -3.3 -10.3 8 113 B N - 0 0 84 -2,-0.3 2,-2.0 1,-0.2 83,-2.0 -0.251 47.7-145.3 -52.7 113.6 14.3 -1.3 -11.1 9 114 B P + 0 0 91 0, 0.0 -1,-0.2 0, 0.0 81,-0.0 -0.315 69.3 106.4 -77.3 53.7 13.4 2.5 -10.6 10 115 B D + 0 0 81 -2,-2.0 -2,-0.1 0, 0.0 2,-0.1 -0.359 40.1 158.9-134.3 54.2 15.6 3.5 -13.6 11 116 B P + 0 0 45 0, 0.0 80,-0.1 0, 0.0 77,-0.1 -0.358 8.0 148.8 -72.1 157.7 13.4 4.5 -16.5 12 117 B N S S+ 0 0 114 78,-0.1 76,-0.0 -2,-0.1 3,-0.0 0.354 81.4 10.5-160.0 -24.0 14.8 6.7 -19.3 13 118 B C S S+ 0 0 38 2,-0.1 2,-1.8 47,-0.0 48,-0.5 0.301 89.4 113.0-144.3 0.1 13.1 5.7 -22.6 14 119 B C + 0 0 1 46,-0.1 75,-1.7 44,-0.1 76,-0.3 -0.522 38.0 166.3 -86.1 73.9 10.2 3.4 -21.5 15 120 B L B +A 59 0A 1 -2,-1.8 44,-2.9 44,-1.0 2,-0.3 -0.133 14.6 163.7 -67.7-179.3 7.2 5.4 -22.4 16 121 B G - 0 0 0 42,-0.4 71,-0.8 71,-0.3 2,-0.3 -0.990 47.4-107.9 177.5 179.3 3.9 3.5 -22.3 17 122 B V E > -C 86 0B 0 40,-0.4 40,-1.0 -2,-0.3 3,-0.9 -0.737 38.3-168.2-129.6 75.7 0.1 3.3 -22.3 18 123 B F E 3 S+C 85 0B 12 67,-0.8 67,-1.5 -2,-0.3 38,-0.1 -0.479 75.2 9.5 -73.3 135.9 -0.7 2.0 -18.8 19 124 B G T 3 S- 0 0 36 -2,-0.2 2,-1.9 35,-0.2 -1,-0.3 0.933 77.8-171.6 56.8 48.9 -4.3 0.9 -18.4 20 125 B L X - 0 0 3 -3,-0.9 3,-0.9 35,-0.4 4,-0.4 0.018 53.6 -95.2 -64.0 31.2 -4.9 1.2 -22.2 21 126 B S T 3 - 0 0 0 -2,-1.9 -1,-0.2 1,-0.3 35,-0.1 0.243 46.2-108.2 76.3 -11.5 -8.6 0.7 -21.6 22 127 B L T 3 S+ 0 0 89 33,-0.3 -1,-0.3 2,-0.1 34,-0.1 0.666 110.6 85.2 58.3 21.5 -8.1 -3.0 -22.3 23 128 B Y S < S+ 0 0 181 -3,-0.9 2,-0.3 32,-0.1 -2,-0.1 0.102 79.7 65.7-130.3 17.1 -10.0 -2.4 -25.6 24 129 B T - 0 0 22 -4,-0.4 2,-0.3 4,-0.0 -2,-0.1 -0.934 64.4-151.6-136.9 159.1 -7.0 -1.2 -27.6 25 130 B T >> - 0 0 51 -2,-0.3 4,-2.1 -3,-0.0 3,-1.9 -0.845 34.1 -99.2-134.4 168.0 -3.8 -2.9 -28.9 26 131 B E H 3> S+ 0 0 52 1,-0.3 4,-1.1 -2,-0.3 5,-0.0 0.625 117.7 62.3 -64.4 -17.0 -0.2 -2.0 -29.8 27 132 B R H 34 S+ 0 0 177 2,-0.2 -1,-0.3 1,-0.1 4,-0.2 0.705 111.7 38.3 -79.5 -22.2 -1.0 -2.0 -33.5 28 133 B D H X> S+ 0 0 66 -3,-1.9 4,-1.3 2,-0.1 3,-0.6 0.791 115.9 51.2 -90.9 -38.1 -3.4 0.9 -32.9 29 134 B L H 3X S+ 0 0 3 -4,-2.1 4,-1.3 1,-0.2 -2,-0.2 0.740 101.4 62.6 -74.2 -23.9 -1.2 2.7 -30.3 30 135 B R H 3X S+ 0 0 106 -4,-1.1 4,-1.0 -5,-0.2 -1,-0.2 0.774 103.9 49.9 -71.2 -25.0 1.8 2.6 -32.6 31 136 B E H <4 S+ 0 0 128 -3,-0.6 4,-0.5 -4,-0.2 -2,-0.2 0.908 110.1 45.8 -80.1 -44.3 -0.1 4.8 -35.1 32 137 B V H < S+ 0 0 33 -4,-1.3 3,-0.2 1,-0.2 4,-0.2 0.769 116.1 46.7 -73.7 -25.1 -1.2 7.5 -32.7 33 138 B F H >X S+ 0 0 0 -4,-1.3 3,-1.5 1,-0.2 4,-0.6 0.775 101.2 65.7 -85.0 -27.8 2.3 7.7 -31.2 34 139 B S T 3< S+ 0 0 68 -4,-1.0 -1,-0.2 1,-0.3 -2,-0.2 0.661 90.2 68.4 -64.5 -16.1 3.9 7.8 -34.6 35 140 B K T 34 S+ 0 0 148 -4,-0.5 -1,-0.3 -3,-0.2 -2,-0.2 0.739 103.0 43.2 -73.5 -22.9 2.2 11.2 -35.1 36 141 B Y T <4 S- 0 0 75 -3,-1.5 34,-0.2 1,-0.3 -1,-0.2 0.507 131.5 -43.7-100.7 -8.6 4.5 12.7 -32.4 37 142 B G S < S- 0 0 18 -4,-0.6 -1,-0.3 -3,-0.2 2,-0.1 -0.930 78.4 -48.2 163.8 177.1 7.7 11.1 -33.5 38 143 B P - 0 0 53 0, 0.0 24,-0.5 0, 0.0 2,-0.4 -0.358 51.9-135.4 -70.9 154.0 9.5 7.8 -34.7 39 144 B I E -B 61 0A 11 22,-0.2 22,-0.3 1,-0.2 3,-0.1 -0.946 19.9-174.7-119.8 131.4 8.8 4.6 -32.8 40 145 B A E - 0 0 26 20,-1.9 2,-0.3 -2,-0.4 21,-0.2 0.908 69.3 -27.3 -86.6 -49.8 11.4 2.1 -31.8 41 146 B D E -B 60 0A 97 19,-0.9 19,-2.6 2,-0.0 -1,-0.3 -0.939 50.8-151.1-156.9 172.8 9.1 -0.6 -30.3 42 147 B V E -B 59 0A 33 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.977 13.3-175.5-151.8 152.9 5.8 -1.2 -28.5 43 148 B S E -B 58 0A 39 15,-2.6 15,-2.4 -2,-0.3 2,-0.4 -0.996 14.7-165.5-152.4 148.3 4.5 -3.8 -26.0 44 149 B I E -B 57 0A 26 -2,-0.3 2,-0.3 13,-0.3 13,-0.3 -0.987 20.3-156.7-135.4 129.9 1.3 -5.0 -24.2 45 150 B V E +B 56 0A 45 11,-3.0 11,-1.5 -2,-0.4 10,-0.3 -0.820 15.7 171.0-117.3 151.5 1.5 -7.3 -21.3 46 151 B Y - 0 0 124 -2,-0.3 7,-0.2 8,-0.2 2,-0.1 -0.593 42.2 -71.2-134.1-174.6 -0.8 -9.8 -19.6 47 152 B D - 0 0 47 -2,-0.2 -1,-0.1 1,-0.1 4,-0.1 -0.482 29.8-128.3 -90.2 168.3 -0.5 -12.5 -16.9 48 153 B Q S S- 0 0 164 -2,-0.1 -1,-0.1 2,-0.1 5,-0.1 0.687 93.1 -3.6 -83.8 -25.5 1.3 -15.8 -17.2 49 154 B Q S S- 0 0 175 1,-0.4 2,-0.2 3,-0.1 3,-0.1 0.623 113.0 -35.4-135.7 -61.0 -1.5 -18.0 -15.9 50 155 B S S S+ 0 0 83 2,-0.1 -1,-0.4 1,-0.1 -3,-0.1 -0.589 79.6 96.0-153.2-154.9 -4.8 -16.5 -14.6 51 156 B R S S- 0 0 235 -2,-0.2 -1,-0.1 -4,-0.1 0, 0.0 0.726 98.4 -94.5 57.4 24.4 -6.4 -13.6 -12.8 52 157 B R - 0 0 217 -3,-0.1 -3,-0.1 -5,-0.0 -2,-0.1 0.217 68.5 -30.2 55.5 178.3 -7.1 -12.2 -16.3 53 158 B S - 0 0 51 -7,-0.2 -7,-0.2 1,-0.1 -5,-0.0 -0.219 39.5-139.0 -60.2 143.9 -4.9 -9.7 -18.2 54 159 B R - 0 0 135 2,-0.1 -8,-0.2 -9,-0.0 -35,-0.2 0.688 40.6-152.0 -72.5 -21.2 -2.7 -7.1 -16.5 55 160 B G + 0 0 3 -10,-0.3 -35,-0.4 1,-0.2 -33,-0.3 0.780 45.4 110.5 61.9 39.0 -4.1 -5.1 -19.4 56 161 B F E - B 0 45A 55 -11,-1.5 -11,-3.0 -37,-0.2 2,-0.3 -0.931 44.0-150.8-145.1 170.4 -1.3 -2.5 -19.9 57 162 B A E - B 0 44A 0 -40,-1.0 -40,-0.4 -2,-0.3 2,-0.3 -0.799 8.1-146.3-138.2 168.6 1.4 -1.5 -22.3 58 163 B F E - B 0 43A 32 -15,-2.4 -15,-2.6 -42,-0.3 -42,-0.4 -0.931 13.4-161.5-133.6 158.9 4.8 0.1 -22.9 59 164 B V E -AB 15 42A 1 -44,-2.9 -44,-1.0 -2,-0.3 2,-0.3 -0.981 2.2-158.6-142.8 149.5 6.2 2.1 -25.8 60 165 B Y E - B 0 41A 11 -19,-2.6 -20,-1.9 -2,-0.3 -19,-0.9 -0.960 2.9-157.1-135.4 149.8 9.7 3.0 -27.0 61 166 B F E - B 0 39A 11 -48,-0.5 -22,-0.2 -2,-0.3 3,-0.1 -0.887 22.6-136.6-129.0 154.3 11.1 5.8 -29.2 62 167 B E S S+ 0 0 126 -24,-0.5 2,-0.3 -2,-0.3 -23,-0.1 0.705 97.3 27.5 -83.3 -21.3 14.3 6.2 -31.3 63 168 B N > - 0 0 84 -25,-0.4 4,-0.9 1,-0.1 3,-0.3 -0.996 54.5-168.1-142.6 135.9 14.8 9.7 -30.0 64 169 B V H > S+ 0 0 50 -2,-0.3 4,-1.3 2,-0.2 5,-0.1 0.525 80.6 84.6-100.0 -11.2 13.7 11.3 -26.7 65 170 B D H 4 S+ 0 0 123 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 0.551 114.6 17.3 -63.6 -7.6 14.5 14.8 -28.0 66 171 B D H >> S+ 0 0 83 -3,-0.3 3,-1.1 -28,-0.1 4,-1.0 0.476 113.5 71.4-136.5 -25.2 11.0 14.5 -29.5 67 172 B A H 3X S+ 0 0 0 -4,-0.9 4,-1.2 1,-0.2 -3,-0.2 0.716 85.1 75.2 -66.6 -18.8 9.3 11.6 -27.6 68 173 B K H 3X S+ 0 0 105 -4,-1.3 4,-1.4 1,-0.2 -1,-0.2 0.829 98.3 44.3 -61.4 -31.9 9.2 14.1 -24.6 69 174 B E H <> S+ 0 0 75 -3,-1.1 4,-2.4 2,-0.2 5,-0.3 0.814 104.4 61.7 -81.7 -32.3 6.3 15.8 -26.4 70 175 B A H X S+ 0 0 0 -4,-1.0 4,-1.2 -34,-0.2 -2,-0.2 0.788 108.2 47.0 -61.6 -25.8 4.6 12.5 -27.3 71 176 B K H X S+ 0 0 44 -4,-1.2 4,-0.9 2,-0.2 -2,-0.2 0.922 113.6 44.5 -78.0 -49.9 4.4 12.0 -23.5 72 177 B E H < S+ 0 0 149 -4,-1.4 -2,-0.2 1,-0.2 -3,-0.1 0.772 119.5 42.1 -71.3 -27.5 3.1 15.4 -22.6 73 178 B R H < S+ 0 0 160 -4,-2.4 -1,-0.2 1,-0.1 -3,-0.2 0.906 115.1 45.0 -84.2 -47.5 0.5 15.5 -25.4 74 179 B A H >< S+ 0 0 1 -4,-1.2 3,-1.6 -5,-0.3 -2,-0.2 0.508 84.0 115.4 -82.0 -5.4 -0.9 12.0 -25.3 75 180 B N T 3< S+ 0 0 92 -4,-0.9 10,-0.2 1,-0.3 3,-0.1 -0.445 90.8 1.3 -66.0 137.3 -1.3 11.8 -21.5 76 181 B G T 3 S+ 0 0 30 8,-2.0 -1,-0.3 1,-0.2 9,-0.1 0.596 95.2 159.5 60.9 12.3 -4.9 11.6 -20.4 77 182 B M < - 0 0 49 -3,-1.6 7,-1.3 6,-0.2 2,-0.4 -0.146 47.7 -99.6 -58.2 160.3 -6.0 11.5 -24.1 78 183 B E + 0 0 144 5,-0.2 -1,-0.1 1,-0.2 -3,-0.0 -0.710 62.6 136.1 -86.3 135.3 -9.4 10.1 -24.9 79 184 B L S S- 0 0 50 -2,-0.4 -1,-0.2 -3,-0.1 -2,-0.0 0.398 93.1 -2.1-146.9 -31.5 -9.4 6.5 -26.2 80 185 B D S S- 0 0 79 -56,-0.0 -2,-0.1 0, 0.0 -59,-0.0 0.103 109.7 -89.9-147.6 13.4 -12.3 4.9 -24.4 81 186 B G S S+ 0 0 33 -4,-0.1 -3,-0.1 3,-0.0 -60,-0.0 0.514 103.7 110.2 84.5 7.8 -13.3 7.9 -22.2 82 187 B R S S- 0 0 136 -5,-0.1 -4,-0.1 -63,-0.0 -5,-0.1 0.558 81.4-126.3 -91.9 -10.4 -10.9 6.7 -19.5 83 188 B R - 0 0 162 -6,-0.2 -5,-0.2 -7,-0.1 -6,-0.2 0.998 39.8-140.2 51.3 74.4 -8.3 9.5 -19.8 84 189 B I - 0 0 4 -7,-1.3 -8,-2.0 1,-0.1 2,-0.5 0.070 7.1-105.2 -63.6 167.9 -5.5 6.9 -20.2 85 190 B R E +C 18 0B 154 -67,-1.5 -67,-0.8 -10,-0.2 2,-0.4 -0.865 39.3 173.0-100.8 127.4 -2.0 7.0 -18.7 86 191 B V E +C 17 0B 0 -2,-0.5 2,-0.3 -69,-0.2 -69,-0.2 -0.915 34.4 69.6-141.4 112.4 0.9 7.9 -21.1 87 192 B D S S- 0 0 55 -71,-0.8 -71,-0.3 -2,-0.4 -28,-0.2 -0.942 86.7 -18.9 174.2-167.1 4.5 8.6 -20.0 88 193 B F - 0 0 65 -2,-0.3 -73,-0.3 -73,-0.2 -72,-0.1 -0.187 50.0-166.8 -54.8 154.7 7.6 6.7 -18.6 89 194 B S - 0 0 30 -75,-1.7 2,-0.2 1,-0.2 -1,-0.1 0.840 29.1-116.1-112.5 -52.3 6.7 3.3 -17.0 90 195 B I S S+ 0 0 49 -76,-0.3 -1,-0.2 2,-0.1 -82,-0.1 -0.584 86.7 58.3 128.4 174.5 9.7 2.0 -14.9 91 196 B T S S- 0 0 51 -83,-2.0 2,-0.9 -2,-0.2 -83,-0.1 0.645 87.3-131.6 46.0 24.7 12.0 -1.0 -15.2 92 197 B K S S+ 0 0 87 -84,-0.2 -1,-0.1 -78,-0.1 -2,-0.1 -0.088 71.1 18.3 36.4 -76.2 13.0 0.2 -18.8 93 198 B R S S- 0 0 132 -2,-0.9 -79,-0.0 1,-0.2 0, 0.0 -0.668 94.3 -67.4-123.2 169.7 12.7 -3.0 -20.8 94 199 B P 0 0 99 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.076 360.0 360.0 -59.5 157.0 11.0 -6.5 -20.6 95 200 B H 0 0 248 0, 0.0 -4,-0.0 0, 0.0 0, 0.0 -0.233 360.0 360.0 -43.8 360.0 12.0 -9.2 -18.2