==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 12-DEC-96 2LFB . COMPND 2 MOLECULE: LFB1/HNF1 TRANSCRIPTION FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS RATTUS; . AUTHOR O.SCHOTT,M.BILLETER,B.LEITING,G.WIDER,K.WUTHRICH . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7738.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 17.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 42.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 223 0, 0.0 2,-2.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-164.3 -10.0 25.6 7.0 2 1 A A - 0 0 92 1,-0.0 0, 0.0 2,-0.0 0, 0.0 -0.452 360.0-164.9 69.4 -69.6 -7.1 23.6 5.4 3 2 A R - 0 0 180 -2,-2.4 2,-0.5 1,-0.1 -1,-0.0 0.341 25.1 -94.5 71.8 156.3 -8.9 20.2 6.0 4 3 A I + 0 0 166 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.935 50.9 170.4 -97.8 125.7 -7.4 16.7 5.8 5 4 A D - 0 0 93 -2,-0.5 2,-0.1 0, 0.0 -2,-0.0 -0.943 42.0 -85.5-134.3 151.2 -8.0 15.2 2.3 6 5 A P - 0 0 101 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.395 30.2-163.7 -63.8 133.2 -6.6 11.9 0.8 7 6 A T - 0 0 136 -2,-0.1 3,-0.0 0, 0.0 0, 0.0 0.955 62.7 -70.8 -68.9 -61.1 -3.2 12.2 -0.7 8 7 A K S S- 0 0 168 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.059 81.2 -71.1-168.8 -72.0 -3.2 9.0 -2.7 9 8 A K + 0 0 110 68,-0.0 2,-0.2 2,-0.0 0, 0.0 -0.774 58.3 137.9 166.3 154.8 -2.9 6.0 -0.4 10 9 A G S S+ 0 0 29 -2,-0.2 2,-1.7 -3,-0.0 67,-0.1 -0.684 72.0 4.9-167.7-109.2 -0.4 4.3 1.9 11 10 A R S S- 0 0 191 -2,-0.2 -2,-0.0 2,-0.0 0, 0.0 -0.478 70.3-167.5 -95.2 61.3 -0.7 2.8 5.4 12 11 A R - 0 0 146 -2,-1.7 -3,-0.0 1,-0.1 0, 0.0 -0.270 15.1-142.9 -54.3 143.9 -4.5 3.2 6.0 13 12 A N S S+ 0 0 150 1,-0.2 -1,-0.1 3,-0.0 -2,-0.0 0.933 95.6 49.1 -78.9 -49.4 -5.4 2.6 9.6 14 13 A R S S+ 0 0 146 53,-0.0 2,-0.3 2,-0.0 -1,-0.2 0.876 101.1 79.9 -59.3 -41.6 -8.8 0.8 9.2 15 14 A F + 0 0 20 54,-0.1 2,-0.3 53,-0.0 53,-0.1 -0.551 59.1 171.4 -63.9 129.2 -7.2 -1.5 6.7 16 15 A K - 0 0 78 -2,-0.3 -3,-0.0 1,-0.3 -2,-0.0 -0.900 29.4-147.2-120.5 158.2 -5.1 -4.3 8.2 17 16 A W - 0 0 35 -2,-0.3 -1,-0.3 1,-0.0 3,-0.1 0.583 42.9-146.2 -76.3-104.1 -3.6 -7.1 6.3 18 17 A G > - 0 0 13 1,-0.1 4,-1.6 2,-0.1 5,-0.1 -0.917 20.3 -77.7 153.6 174.4 -3.8 -9.8 9.0 19 18 A P H > S+ 0 0 100 0, 0.0 4,-1.5 0, 0.0 3,-0.3 0.952 128.9 37.4 -67.4 -50.9 -2.1 -12.9 10.5 20 19 A A H > S+ 0 0 30 1,-0.3 4,-2.4 2,-0.2 3,-0.2 0.947 114.4 60.1 -65.2 -45.8 -3.2 -15.5 7.9 21 20 A S H > S+ 0 0 0 2,-0.3 4,-2.7 1,-0.2 -1,-0.3 0.784 98.0 56.7 -46.3 -41.4 -2.7 -12.7 5.4 22 21 A Q H X S+ 0 0 86 -4,-1.6 4,-2.8 -3,-0.3 -1,-0.2 0.968 107.9 48.1 -61.5 -49.0 1.0 -12.4 6.4 23 22 A Q H X S+ 0 0 115 -4,-1.5 4,-3.1 1,-0.2 -2,-0.3 0.938 110.3 53.2 -50.4 -49.0 1.3 -16.1 5.5 24 23 A I H < S+ 0 0 10 -4,-2.4 4,-0.4 2,-0.2 -2,-0.2 0.930 109.3 47.3 -52.6 -53.0 -0.5 -15.3 2.2 25 24 A L H >X S+ 0 0 9 -4,-2.7 4,-2.2 1,-0.2 3,-1.4 0.944 114.1 47.7 -57.5 -49.3 2.0 -12.5 1.4 26 25 A F H 3X S+ 0 0 145 -4,-2.8 4,-2.0 1,-0.3 -2,-0.2 0.937 109.1 53.3 -56.8 -47.8 4.9 -14.8 2.2 27 26 A Q H 3< S+ 0 0 47 -4,-3.1 4,-0.5 2,-0.2 -1,-0.3 0.411 106.3 53.4 -77.7 5.9 3.5 -17.7 0.2 28 27 A A H <> S+ 0 0 2 -3,-1.4 4,-1.6 -4,-0.4 3,-0.4 0.789 107.4 50.9 -87.3 -48.6 3.2 -15.3 -2.8 29 28 A Y H < S+ 0 0 76 -4,-2.2 -2,-0.2 1,-0.2 -3,-0.2 0.832 102.5 62.4 -49.4 -38.7 6.9 -14.6 -2.2 30 29 A E T < S+ 0 0 115 -4,-2.0 -1,-0.2 -5,-0.2 -3,-0.1 0.969 116.1 29.3 -52.6 -50.4 7.5 -18.4 -2.3 31 30 A R T 4 S+ 0 0 113 -4,-0.5 2,-0.3 -3,-0.4 -2,-0.2 0.996 127.4 11.5 -75.5 -76.2 6.2 -18.5 -5.9 32 31 A Q < - 0 0 63 -4,-1.6 -1,-0.2 1,-0.1 -2,-0.0 -0.838 38.7-176.9-128.3 136.8 7.0 -15.3 -7.7 33 32 A K S S+ 0 0 116 -2,-0.3 -1,-0.1 1,-0.2 -4,-0.1 0.345 83.6 59.0-110.5 -4.2 9.1 -12.3 -7.0 34 33 A N S S- 0 0 125 0, 0.0 2,-0.9 0, 0.0 -1,-0.2 -0.950 90.7-132.9-126.5 103.6 8.2 -10.2 -10.1 35 34 A P + 0 0 57 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.478 41.2 161.0 -74.4 100.9 4.4 -9.8 -9.9 36 35 A S - 0 0 72 -2,-0.9 2,-0.0 1,-0.0 0, 0.0 0.932 53.0 -70.6 -90.0 -88.5 3.3 -10.7 -13.4 37 36 A K S >> S+ 0 0 94 3,-0.0 3,-2.4 4,-0.0 4,-1.0 0.190 112.2 37.4-128.2 -94.2 -0.3 -11.6 -13.6 38 37 A E H >> S+ 0 0 112 1,-0.3 4,-3.3 2,-0.2 3,-0.6 0.695 110.9 63.2 -36.6 -60.1 -2.1 -14.7 -12.2 39 38 A E H 3> S+ 0 0 25 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.709 111.5 35.1 -14.4 -66.2 0.1 -14.8 -9.1 40 39 A R H <> S+ 0 0 39 -3,-2.4 4,-2.6 2,-0.3 -1,-0.3 0.859 117.3 51.1 -72.2 -45.9 -1.1 -11.3 -7.9 41 40 A E H X>S+ 0 0 5 -4,-3.2 5,-2.5 1,-0.2 3,-1.3 0.857 103.3 60.1 -58.6 -32.0 -13.3 -13.3 5.0 53 52 A I H ><5S+ 0 0 128 -4,-1.9 3,-1.4 1,-0.3 -1,-0.2 0.924 97.5 58.8 -63.7 -41.6 -12.7 -16.4 7.2 54 53 A Q H 3<5S+ 0 0 56 -4,-0.8 -1,-0.3 -3,-0.4 -2,-0.2 0.688 117.4 33.4 -59.5 -22.1 -11.6 -14.1 10.0 55 54 A R H <<5S- 0 0 168 -3,-1.3 -1,-0.3 -4,-0.6 -2,-0.2 0.371 106.4-121.6-110.9 0.8 -15.1 -12.4 9.7 56 55 A G T <<5 + 0 0 70 -3,-1.4 -3,-0.2 -4,-0.6 2,-0.2 0.855 56.2 163.8 52.4 36.3 -17.2 -15.5 8.8 57 56 A V < - 0 0 44 -5,-2.5 -1,-0.2 -6,-0.1 5,-0.1 -0.585 48.5 -89.9 -81.6 149.1 -18.1 -13.6 5.6 58 57 A S > - 0 0 73 -2,-0.2 3,-1.9 3,-0.2 6,-0.3 -0.334 27.6-133.3 -58.4 138.0 -19.6 -15.6 2.8 59 58 A P G > S+ 0 0 101 0, 0.0 3,-2.3 0, 0.0 4,-0.2 0.956 110.0 56.7 -58.3 -47.4 -16.9 -16.9 0.3 60 59 A S G 3 S+ 0 0 101 1,-0.3 -2,-0.1 2,-0.1 -3,-0.0 0.317 119.0 33.3 -67.1 8.2 -19.1 -15.6 -2.6 61 60 A Q G X S+ 0 0 102 -3,-1.9 3,-2.4 -4,-0.1 -1,-0.3 -0.063 73.5 137.6-147.9 39.5 -18.9 -12.2 -0.9 62 61 A A G X S+ 0 0 8 -3,-2.3 3,-1.7 1,-0.3 -2,-0.1 0.869 70.6 64.9 -58.6 -26.8 -15.4 -12.4 0.6 63 62 A Q G > S+ 0 0 83 1,-0.3 3,-2.4 -4,-0.2 -1,-0.3 0.711 73.2 92.6 -69.6 -16.9 -14.9 -8.8 -0.6 64 63 A G G < + 0 0 39 -3,-2.4 3,-0.3 1,-0.3 -1,-0.3 0.689 54.6 98.4 -50.0 -20.6 -17.6 -7.9 1.9 65 64 A L G X + 0 0 10 -3,-1.7 3,-1.6 1,-0.2 2,-0.8 0.749 54.1 155.9 -28.2 -43.6 -14.6 -7.3 4.2 66 65 A G G X + 0 0 42 -3,-2.4 3,-2.0 1,-0.3 -1,-0.2 -0.105 59.2 53.1 55.4 -85.7 -15.3 -3.7 3.1 67 66 A S G 3 S+ 0 0 77 -2,-0.8 -1,-0.3 -3,-0.3 -2,-0.1 0.882 130.4 20.1 -39.4 -55.3 -13.7 -1.9 6.0 68 67 A N G < S+ 0 0 14 -3,-1.6 2,-0.5 -53,-0.1 -1,-0.3 -0.248 88.8 165.6-115.3 38.5 -10.5 -3.9 5.4 69 68 A L < - 0 0 40 -3,-2.0 2,-1.5 -4,-0.1 5,-0.1 -0.460 36.2-137.0 -64.2 115.3 -11.1 -4.9 1.8 70 69 A V - 0 0 1 -2,-0.5 2,-0.3 -26,-0.1 -22,-0.1 -0.630 33.8-179.9 -65.7 90.2 -7.9 -6.2 0.3 71 70 A T >> - 0 0 62 -2,-1.5 3,-2.0 1,-0.1 4,-1.0 -0.670 43.7 -98.9 -86.5 157.6 -8.3 -4.5 -3.1 72 71 A E H >> S+ 0 0 102 1,-0.3 4,-2.8 -2,-0.3 3,-0.8 0.884 121.2 61.9 -37.8 -57.0 -5.6 -5.0 -5.8 73 72 A V H 3> S+ 0 0 36 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.744 99.6 57.2 -53.1 -27.3 -3.9 -1.6 -5.0 74 73 A R H <> S+ 0 0 22 -3,-2.0 4,-2.6 2,-0.2 -1,-0.3 0.956 111.2 40.1 -64.5 -51.8 -3.1 -3.0 -1.5 75 74 A V H X S+ 0 0 29 -4,-2.6 4,-2.6 2,-0.2 3,-1.3 0.938 114.2 42.4 -59.1 -47.1 3.0 -4.4 -0.5 79 78 A F H 3X S+ 0 0 17 -4,-2.2 4,-2.7 1,-0.3 5,-0.3 0.951 114.8 52.4 -59.8 -43.9 5.2 -5.6 -3.3 80 79 A A H 3< S+ 0 0 47 -4,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.526 109.2 51.4 -70.3 -6.4 5.9 -2.0 -4.1 81 80 A N H XX S+ 0 0 24 -3,-1.3 4,-2.9 -4,-0.8 3,-1.4 0.884 109.2 49.3 -79.4 -64.2 6.9 -1.6 -0.4 82 81 A R H 3X S+ 0 0 94 -4,-2.6 4,-0.9 1,-0.3 -2,-0.2 0.803 114.5 42.8 -43.5 -52.3 9.2 -4.6 -0.6 83 82 A R H 3X S+ 0 0 189 -4,-2.7 4,-2.7 1,-0.2 -1,-0.3 0.776 116.4 48.3 -71.6 -26.0 11.0 -3.4 -3.8 84 83 A K H <> S+ 0 0 75 -3,-1.4 4,-3.0 -5,-0.3 5,-0.3 0.854 100.7 64.5 -75.9 -35.8 11.1 0.3 -2.5 85 84 A E H < S+ 0 0 37 -4,-2.9 4,-0.5 1,-0.2 -2,-0.2 0.779 114.1 36.0 -55.7 -31.6 12.5 -1.1 0.9 86 85 A E H X S+ 0 0 79 -4,-0.9 4,-3.0 -5,-0.3 5,-0.3 0.922 114.3 55.4 -73.3 -64.2 15.3 -2.0 -1.4 87 86 A A H X S+ 0 0 41 -4,-2.7 4,-0.7 1,-0.2 -2,-0.2 0.708 104.5 52.5 -52.1 -38.7 15.3 1.0 -3.7 88 87 A F H >X S+ 0 0 93 -4,-3.0 4,-2.2 12,-0.3 3,-1.6 0.997 119.3 33.7 -57.2 -64.6 15.6 3.6 -1.0 89 88 A R H 3> S+ 0 0 68 11,-0.9 4,-2.0 -4,-0.5 -2,-0.2 0.802 110.5 65.9 -64.7 -33.7 18.7 2.1 0.6 90 89 A H H 3< S+ 0 0 139 -4,-3.0 -1,-0.3 -6,-0.2 -2,-0.2 0.720 113.1 34.1 -58.5 -25.6 19.9 0.9 -2.8 91 90 A K H << S+ 0 0 170 -3,-1.6 -2,-0.2 -4,-0.7 -1,-0.2 0.807 126.2 37.5 -97.3 -46.1 20.3 4.6 -3.7 92 91 A L H < S- 0 0 90 -4,-2.2 -3,-0.2 -5,-0.1 -2,-0.2 0.937 73.3-174.0 -73.9 -52.7 21.3 6.1 -0.3 93 92 A A S < S+ 0 0 74 -4,-2.0 -4,-0.1 -5,-0.2 -3,-0.1 0.698 72.5 70.0 59.8 27.1 23.6 3.2 0.9 94 93 A M S S+ 0 0 169 3,-0.1 3,-0.2 -5,-0.0 -1,-0.1 0.091 78.8 81.6-144.7 17.9 24.1 4.9 4.3 95 94 A D + 0 0 20 -6,-0.2 -6,-0.1 1,-0.1 -2,-0.1 -0.409 34.7 140.7-138.7 50.3 20.5 4.4 5.6 96 95 A T S > S+ 0 0 107 -7,-0.1 4,-0.6 4,-0.1 3,-0.2 0.897 77.2 43.4 -63.7 -42.5 20.1 0.9 7.0 97 96 A Y T 4 S+ 0 0 186 2,-0.2 -3,-0.1 1,-0.2 0, 0.0 -0.376 93.4 55.3 -90.7 179.3 18.0 2.3 9.9 98 97 A K T 4 S- 0 0 181 -2,-0.1 -1,-0.2 1,-0.0 -2,-0.1 0.767 133.8 -44.0 63.1 33.8 15.3 5.0 9.6 99 98 A L T 4 0 0 87 -3,-0.2 -2,-0.2 -11,-0.0 -3,-0.0 0.901 360.0 360.0 72.6 99.0 13.5 2.7 7.0 100 99 A N < 0 0 55 -4,-0.6 -11,-0.9 -12,-0.1 -12,-0.3 0.941 360.0 360.0 -63.9 360.0 15.6 1.1 4.3