==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-OCT-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-SEP-11 2LK2 . COMPND 2 MOLECULE: HOMEOBOX PROTEIN TGIF1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.YANG,T.A.RAMELOT,J.R.CORT,R.SHASTRY,C.CICCOSANTI,K.HAMILTO . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7189.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 53.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 42.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 212 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 61.7 5.1 30.1 -16.6 2 2 A G - 0 0 81 1,-0.1 2,-0.5 0, 0.0 0, 0.0 -0.375 360.0-133.1 -69.9 149.1 6.2 26.6 -17.4 3 3 A H - 0 0 155 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.900 14.4-129.6-108.0 125.8 7.1 24.2 -14.5 4 4 A H + 0 0 175 -2,-0.5 2,-0.3 2,-0.0 0, 0.0 -0.545 43.4 152.2 -73.4 129.8 10.3 22.2 -14.6 5 5 A H - 0 0 126 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.975 30.6-145.5-152.1 164.1 9.7 18.5 -14.0 6 6 A H - 0 0 172 -2,-0.3 2,-0.7 2,-0.1 -2,-0.0 -0.990 16.7-129.1-136.6 144.2 11.2 15.1 -14.8 7 7 A H + 0 0 170 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.812 52.9 125.0 -96.2 113.9 9.6 11.7 -15.4 8 8 A H - 0 0 163 -2,-0.7 -2,-0.1 2,-0.0 2,-0.0 -0.927 59.4-105.0-166.0 138.2 11.2 8.9 -13.3 9 9 A S + 0 0 101 -2,-0.3 2,-0.3 1,-0.0 -2,-0.0 -0.348 41.1 178.7 -66.6 147.0 9.9 6.3 -10.8 10 10 A H - 0 0 126 -2,-0.0 2,-0.2 0, 0.0 -2,-0.0 -0.998 27.8-113.6-149.7 149.7 10.6 7.0 -7.1 11 11 A M - 0 0 163 -2,-0.3 3,-0.1 1,-0.1 6,-0.0 -0.528 36.1-111.9 -83.5 151.1 9.8 5.3 -3.8 12 12 A L - 0 0 21 -2,-0.2 -1,-0.1 1,-0.1 5,-0.1 -0.345 46.9 -76.4 -77.0 164.5 7.4 7.0 -1.3 13 13 A P > - 0 0 68 0, 0.0 4,-2.5 0, 0.0 5,-0.2 -0.118 39.7-114.6 -57.2 154.0 8.7 8.3 2.1 14 14 A K H > S+ 0 0 187 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.899 116.9 55.0 -60.2 -39.1 9.4 5.9 4.9 15 15 A E H > S+ 0 0 152 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.941 110.8 44.2 -61.7 -44.3 6.5 7.3 7.0 16 16 A S H > S+ 0 0 4 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.899 112.6 52.7 -67.8 -37.9 4.1 6.7 4.2 17 17 A V H X S+ 0 0 38 -4,-2.5 4,-3.3 2,-0.2 5,-0.3 0.924 107.9 51.3 -64.3 -42.8 5.5 3.2 3.5 18 18 A Q H X S+ 0 0 87 -4,-2.6 4,-2.5 -5,-0.2 -2,-0.2 0.962 115.6 40.4 -60.9 -49.8 5.1 2.3 7.2 19 19 A I H X S+ 0 0 49 -4,-2.0 4,-1.9 -5,-0.2 -2,-0.2 0.942 119.7 45.6 -65.5 -45.0 1.4 3.3 7.3 20 20 A L H X S+ 0 0 1 -4,-2.9 4,-2.0 -5,-0.2 -2,-0.2 0.926 115.3 47.1 -64.8 -42.5 0.7 1.9 3.8 21 21 A R H X S+ 0 0 104 -4,-3.3 4,-3.4 -5,-0.3 5,-0.3 0.906 107.7 56.7 -66.6 -39.9 2.5 -1.3 4.6 22 22 A D H X S+ 0 0 61 -4,-2.5 4,-2.6 -5,-0.3 5,-0.3 0.936 107.7 48.0 -58.9 -44.3 0.7 -1.6 8.0 23 23 A W H X S+ 0 0 49 -4,-1.9 4,-2.4 2,-0.2 -1,-0.2 0.952 115.2 44.3 -62.4 -47.1 -2.7 -1.5 6.2 24 24 A L H < S+ 0 0 4 -4,-2.0 -2,-0.2 2,-0.2 -1,-0.2 0.927 113.2 51.4 -63.9 -43.3 -1.6 -4.2 3.7 25 25 A Y H >< S+ 0 0 123 -4,-3.4 3,-0.7 1,-0.2 -1,-0.2 0.925 114.2 43.3 -61.2 -42.8 0.0 -6.3 6.4 26 26 A E H 3< S+ 0 0 125 -4,-2.6 -1,-0.2 -5,-0.3 -2,-0.2 0.859 126.2 34.0 -71.6 -33.7 -3.2 -6.2 8.5 27 27 A H T 3< S+ 0 0 58 -4,-2.4 -1,-0.3 -5,-0.3 -2,-0.2 -0.422 71.3 137.9-118.9 57.8 -5.3 -6.8 5.3 28 28 A R S X S+ 0 0 40 -3,-0.7 3,-0.9 -2,-0.1 -1,-0.2 0.887 73.9 51.3 -68.3 -37.9 -3.1 -9.1 3.2 29 29 A Y G > S+ 0 0 101 1,-0.3 2,-1.2 -3,-0.2 3,-0.7 0.999 114.6 36.9 -63.2 -72.1 -6.1 -11.3 2.3 30 30 A N G 3 S+ 0 0 73 1,-0.3 -1,-0.3 -6,-0.0 -2,-0.1 0.077 83.1 118.4 -71.8 33.7 -8.6 -8.7 1.0 31 31 A A G < + 0 0 3 -2,-1.2 -1,-0.3 -3,-0.9 3,-0.2 0.592 41.0 121.8 -75.4 -7.6 -5.6 -6.9 -0.4 32 32 A Y S < S- 0 0 99 -3,-0.7 -3,-0.0 1,-0.1 45,-0.0 -0.148 83.8 -71.3 -52.9 153.4 -7.2 -7.4 -3.8 33 33 A P + 0 0 79 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.159 68.6 159.3 -48.6 130.0 -7.9 -4.1 -5.8 34 34 A S > - 0 0 23 -3,-0.2 4,-1.9 1,-0.1 5,-0.2 -0.979 45.6-138.9-156.6 141.5 -10.7 -2.1 -4.2 35 35 A E H > S+ 0 0 149 -2,-0.3 4,-2.9 1,-0.2 5,-0.3 0.869 105.2 58.5 -70.0 -35.1 -11.9 1.5 -4.3 36 36 A Q H > S+ 0 0 120 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.929 108.9 44.1 -61.8 -43.3 -12.6 1.5 -0.5 37 37 A E H > S+ 0 0 33 2,-0.2 4,-2.7 1,-0.2 5,-0.3 0.940 115.8 46.9 -68.1 -45.3 -9.0 0.6 0.3 38 38 A K H X S+ 0 0 30 -4,-1.9 4,-2.2 1,-0.2 -2,-0.2 0.926 115.9 45.3 -63.5 -42.8 -7.5 3.1 -2.2 39 39 A A H X S+ 0 0 46 -4,-2.9 4,-2.1 2,-0.2 5,-0.2 0.925 114.5 48.0 -68.0 -43.0 -9.8 5.8 -0.9 40 40 A L H X S+ 0 0 77 -4,-2.4 4,-2.1 -5,-0.3 -2,-0.2 0.947 115.1 44.6 -64.0 -46.3 -9.2 5.0 2.7 41 41 A L H X S+ 0 0 1 -4,-2.7 4,-3.1 -5,-0.2 6,-0.2 0.908 110.3 56.1 -65.4 -39.6 -5.4 4.9 2.2 42 42 A S H < S+ 0 0 15 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.936 110.1 44.4 -59.7 -44.7 -5.5 8.1 0.1 43 43 A Q H < S+ 0 0 162 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.912 115.0 49.0 -67.4 -40.1 -7.2 10.0 3.0 44 44 A Q H < S+ 0 0 104 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.925 113.7 51.1 -66.3 -42.5 -4.8 8.5 5.6 45 45 A T S < S- 0 0 12 -4,-3.1 7,-0.0 -5,-0.2 -29,-0.0 -0.463 83.4-127.0 -91.4 167.7 -1.7 9.4 3.5 46 46 A H S S+ 0 0 141 -2,-0.1 2,-0.2 2,-0.0 -4,-0.1 0.193 78.9 104.2 -97.2 16.0 -0.9 12.8 2.0 47 47 A L S S- 0 0 19 -6,-0.2 -2,-0.1 -5,-0.2 2,-0.0 -0.600 76.9-103.5 -96.4 159.4 -0.4 11.2 -1.4 48 48 A S > - 0 0 53 -2,-0.2 4,-2.5 1,-0.1 5,-0.3 -0.266 31.9-107.2 -75.5 167.2 -2.9 11.4 -4.4 49 49 A T H > S+ 0 0 71 1,-0.2 4,-3.3 2,-0.2 5,-0.3 0.919 120.5 52.1 -61.9 -42.6 -5.2 8.5 -5.3 50 50 A L H > S+ 0 0 116 2,-0.2 4,-2.7 1,-0.2 5,-0.4 0.929 110.6 47.7 -62.2 -42.8 -3.1 7.8 -8.5 51 51 A Q H > S+ 0 0 79 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.953 117.3 41.6 -64.6 -46.8 0.1 7.6 -6.4 52 52 A V H X S+ 0 0 0 -4,-2.5 4,-3.1 2,-0.2 5,-0.2 0.927 116.5 49.3 -67.2 -43.5 -1.4 5.3 -3.8 53 53 A C H X S+ 0 0 28 -4,-3.3 4,-2.3 -5,-0.3 5,-0.2 0.965 116.1 41.4 -62.3 -50.2 -3.2 3.2 -6.4 54 54 A N H X S+ 0 0 97 -4,-2.7 4,-2.1 -5,-0.3 5,-0.3 0.931 118.3 47.5 -64.1 -42.0 -0.1 2.8 -8.6 55 55 A W H X S+ 0 0 31 -4,-2.5 4,-3.6 -5,-0.4 5,-0.5 0.907 109.8 53.7 -65.5 -39.7 2.0 2.2 -5.5 56 56 A F H X S+ 0 0 5 -4,-3.1 4,-2.4 -5,-0.2 5,-0.4 0.930 108.9 48.4 -61.6 -44.3 -0.6 -0.3 -4.1 57 57 A I H X S+ 0 0 61 -4,-2.3 4,-1.6 -5,-0.2 -1,-0.2 0.936 121.2 35.8 -63.5 -44.7 -0.5 -2.3 -7.3 58 58 A N H X S+ 0 0 39 -4,-2.1 4,-1.1 -5,-0.2 5,-0.2 0.959 121.5 44.8 -74.4 -51.7 3.4 -2.4 -7.3 59 59 A A H >X S+ 0 0 3 -4,-3.6 4,-2.2 -5,-0.3 3,-0.8 0.949 116.8 46.4 -58.6 -48.1 3.9 -2.6 -3.5 60 60 A R H 3X S+ 0 0 12 -4,-2.4 4,-2.3 -5,-0.5 -1,-0.2 0.930 110.0 53.5 -61.7 -43.3 1.2 -5.3 -3.2 61 61 A R H 3< S+ 0 0 64 -4,-1.6 22,-0.3 -5,-0.4 -1,-0.3 0.714 119.2 36.2 -65.7 -17.1 2.6 -7.2 -6.2 62 62 A R H << S+ 0 0 67 -4,-1.1 4,-0.4 -3,-0.8 -2,-0.2 0.593 122.3 43.0-108.7 -17.6 6.0 -7.2 -4.3 63 63 A L H X S+ 0 0 26 -4,-2.2 4,-2.2 -5,-0.2 5,-0.3 0.853 106.9 55.6 -96.0 -44.2 4.8 -7.5 -0.7 64 64 A L H X S+ 0 0 4 -4,-2.3 4,-3.6 -5,-0.3 5,-0.4 0.926 103.8 56.1 -56.9 -45.7 2.0 -10.2 -1.0 65 65 A P H > S+ 0 0 2 0, 0.0 4,-2.3 0, 0.0 5,-0.3 0.915 110.4 44.5 -54.8 -44.6 4.4 -12.8 -2.6 66 66 A D H > S+ 0 0 64 -4,-0.4 4,-2.4 2,-0.2 5,-0.2 0.950 119.0 41.3 -67.4 -48.4 6.9 -12.5 0.3 67 67 A M H X S+ 0 0 46 -4,-2.2 4,-2.9 2,-0.2 5,-0.4 0.921 116.7 49.1 -67.2 -42.3 4.2 -12.7 3.0 68 68 A L H X S+ 0 0 12 -4,-3.6 4,-0.8 -5,-0.3 6,-0.2 0.940 114.8 44.0 -64.3 -44.5 2.2 -15.4 1.2 69 69 A R H < S+ 0 0 171 -4,-2.3 -1,-0.2 -5,-0.4 -2,-0.2 0.916 115.3 49.3 -67.1 -40.3 5.3 -17.6 0.6 70 70 A K H < S+ 0 0 153 -4,-2.4 -2,-0.2 -5,-0.3 -1,-0.2 0.939 127.2 25.0 -65.0 -45.1 6.5 -17.0 4.2 71 71 A D H < S- 0 0 78 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.2 0.950 82.1-157.7 -82.6 -74.1 3.1 -17.9 5.6 72 72 A G < + 0 0 50 -4,-0.8 -3,-0.1 -5,-0.4 -4,-0.1 0.844 50.3 123.2 95.9 42.9 1.4 -20.2 3.0 73 73 A K S S- 0 0 155 -5,-0.2 -5,-0.1 1,-0.1 -4,-0.1 0.628 91.7 -3.7-106.7 -20.3 -2.3 -19.7 4.0 74 74 A D S S- 0 0 43 -6,-0.2 2,-0.7 2,-0.0 -5,-0.1 -0.207 71.6-179.1-170.7 67.3 -3.5 -18.5 0.5 75 75 A P + 0 0 84 0, 0.0 2,-0.3 0, 0.0 4,-0.1 -0.635 36.5 106.0 -78.9 111.1 -0.7 -18.1 -2.1 76 76 A N + 0 0 67 -2,-0.7 -8,-0.1 1,-0.3 -2,-0.0 -0.947 32.9 68.3-165.6-176.1 -2.2 -16.9 -5.4 77 77 A Q S S- 0 0 45 -2,-0.3 -1,-0.3 2,-0.1 -13,-0.0 0.882 115.7 -14.9 54.4 104.6 -2.6 -13.8 -7.7 78 78 A F - 0 0 136 1,-0.2 -2,-0.1 -3,-0.1 -14,-0.0 0.872 65.5-169.0 36.3 96.3 0.8 -13.0 -9.2 79 79 A T + 0 0 93 -4,-0.1 -1,-0.2 -15,-0.1 -2,-0.1 0.348 37.3 139.4 -92.4 6.6 3.3 -14.9 -7.1 80 80 A I - 0 0 80 2,-0.1 0, 0.0 1,-0.0 0, 0.0 -0.150 54.8-119.4 -51.0 144.0 6.2 -13.0 -8.7 81 81 A S - 0 0 52 1,-0.2 2,-1.2 -16,-0.1 -15,-0.1 0.523 66.6 -41.6 -61.8-141.6 8.9 -12.0 -6.2 82 82 A R S S- 0 0 109 2,-0.3 -20,-0.2 1,-0.1 -1,-0.2 -0.227 99.7 -79.0 -85.9 49.9 9.8 -8.3 -5.5 83 83 A R S S- 0 0 111 -2,-1.2 2,-1.0 -22,-0.3 -1,-0.1 0.976 88.0 -48.7 53.6 82.2 9.6 -7.6 -9.3 84 84 A G + 0 0 39 1,-0.2 -2,-0.3 2,-0.1 -1,-0.2 -0.449 68.6 168.8 64.7-100.6 12.9 -8.9 -10.5 85 85 A A + 0 0 72 -2,-1.0 -1,-0.2 1,-0.1 -2,-0.1 0.829 36.7 124.4 61.0 28.3 15.4 -7.3 -8.0 86 86 A K + 0 0 172 -3,-0.1 2,-0.4 2,-0.0 -1,-0.1 0.437 38.6 106.6 -97.1 0.0 18.0 -9.6 -9.5 87 87 A I + 0 0 137 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.641 39.7 151.1 -81.4 131.6 20.4 -6.7 -10.3 88 88 A S 0 0 117 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.870 360.0 360.0-162.2 125.1 23.4 -6.4 -7.9 89 89 A E 0 0 243 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.949 360.0 360.0-171.5 360.0 26.9 -5.0 -8.4