==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-MAR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 16-OCT-11 2LKL . COMPND 2 MOLECULE: ERYTHROCYTE MEMBRANE PROTEIN 1 (PFEMP1); . SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; . AUTHOR I.VAKONAKIS,M.C.ERAT . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 65.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 118 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-154.9 -0.3 63.8 -6.0 2 2 A P - 0 0 129 0, 0.0 2,-0.1 0, 0.0 0, 0.0 -0.119 360.0 -86.4 -53.3 150.0 -0.4 63.8 -2.1 3 3 A L - 0 0 169 1,-0.1 2,-0.1 2,-0.1 0, 0.0 -0.386 47.0-131.9 -63.7 134.1 1.2 60.9 -0.3 4 4 A G - 0 0 41 -3,-0.1 3,-0.2 -2,-0.1 -1,-0.1 -0.329 18.8-112.3 -82.8 168.1 -1.1 57.8 0.0 5 5 A S S S+ 0 0 115 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.1 0.359 92.3 101.7 -81.1 6.8 -1.7 55.8 3.2 6 6 A M + 0 0 136 1,-0.1 -1,-0.2 2,-0.0 -3,-0.0 0.972 34.1 155.4 -52.7 -82.4 0.1 52.9 1.5 7 7 A N + 0 0 121 -3,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.907 29.6 179.1 53.5 43.2 3.5 53.1 3.1 8 8 A K - 0 0 121 1,-0.1 2,-0.2 54,-0.0 -1,-0.1 -0.243 32.3 -91.5 -72.8 164.9 4.0 49.4 2.4 9 9 A F - 0 0 65 49,-0.1 2,-0.1 1,-0.1 -1,-0.1 -0.526 38.3-124.3 -79.4 144.5 7.2 47.5 3.3 10 10 A T > - 0 0 78 -2,-0.2 4,-4.3 1,-0.1 5,-0.2 -0.438 25.9-107.6 -83.8 161.2 10.0 47.2 0.8 11 11 A D H > S+ 0 0 114 1,-0.2 4,-3.3 2,-0.2 5,-0.2 0.889 124.0 50.5 -54.6 -38.7 11.4 43.9 -0.3 12 12 A D H > S+ 0 0 112 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.943 115.6 40.2 -64.5 -47.8 14.5 44.8 1.8 13 13 A E H > S+ 0 0 89 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.878 116.0 53.0 -67.4 -37.7 12.4 45.6 4.8 14 14 A W H X S+ 0 0 5 -4,-4.3 4,-2.6 2,-0.2 -2,-0.2 0.948 105.5 52.0 -62.9 -49.8 10.2 42.6 4.0 15 15 A N H X S+ 0 0 75 -4,-3.3 4,-1.8 1,-0.3 -1,-0.2 0.889 109.7 51.1 -54.6 -39.1 13.1 40.2 3.8 16 16 A Q H X S+ 0 0 97 -4,-1.7 4,-1.9 1,-0.2 -1,-0.3 0.924 109.0 50.7 -63.5 -43.2 14.1 41.4 7.2 17 17 A L H X S+ 0 0 27 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.868 104.8 58.4 -61.4 -37.6 10.6 40.8 8.5 18 18 A K H X S+ 0 0 24 -4,-2.6 4,-3.0 1,-0.2 -1,-0.2 0.925 104.9 49.6 -59.3 -45.1 10.7 37.3 7.1 19 19 A Q H X S+ 0 0 112 -4,-1.8 4,-3.6 1,-0.2 -1,-0.2 0.917 109.6 51.4 -60.8 -43.5 13.8 36.5 9.2 20 20 A D H X S+ 0 0 63 -4,-1.9 4,-2.5 2,-0.2 -1,-0.2 0.915 112.6 45.8 -60.0 -43.4 12.0 37.9 12.3 21 21 A F H X S+ 0 0 5 -4,-2.4 4,-1.9 2,-0.2 -2,-0.2 0.944 114.5 47.6 -64.7 -46.9 9.0 35.7 11.6 22 22 A I H X S+ 0 0 10 -4,-3.0 4,-2.0 1,-0.2 3,-0.3 0.939 112.3 49.8 -58.4 -48.3 11.2 32.7 10.9 23 23 A S H X S+ 0 0 61 -4,-3.6 4,-2.7 1,-0.2 -1,-0.2 0.906 107.7 54.7 -57.6 -42.9 13.2 33.4 14.1 24 24 A G H X S+ 0 0 10 -4,-2.5 4,-1.9 1,-0.2 -1,-0.2 0.859 107.3 50.8 -59.6 -36.7 9.9 33.6 16.1 25 25 A I H < S+ 0 0 8 -4,-1.9 6,-0.4 -3,-0.3 -1,-0.2 0.882 115.8 40.1 -70.8 -37.6 8.9 30.2 14.8 26 26 A L H < S+ 0 0 63 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.766 112.7 57.3 -80.7 -25.2 12.2 28.6 15.8 27 27 A E H < S+ 0 0 121 -4,-2.7 2,-0.2 -5,-0.3 -2,-0.2 0.874 103.1 62.4 -71.2 -37.3 12.2 30.6 19.0 28 28 A N S >< S- 0 0 39 -4,-1.9 3,-2.4 -5,-0.2 4,-0.1 -0.593 92.6-118.3 -89.8 151.9 8.9 29.2 20.1 29 29 A E T > S+ 0 0 157 1,-0.3 3,-2.3 -2,-0.2 4,-0.2 0.741 107.1 83.8 -57.4 -21.3 8.2 25.5 20.7 30 30 A Q T >> + 0 0 55 1,-0.3 3,-2.6 2,-0.2 4,-0.8 0.655 62.1 90.4 -57.9 -14.0 5.8 25.9 17.9 31 31 A K H <> S+ 0 0 79 -3,-2.4 4,-1.7 -6,-0.4 3,-0.3 0.813 73.4 71.0 -52.3 -28.1 8.8 25.3 15.6 32 32 A D H <> S+ 0 0 69 -3,-2.3 4,-1.8 1,-0.2 -1,-0.3 0.841 90.2 59.1 -57.1 -34.8 7.8 21.7 16.0 33 33 A L H <> S+ 0 0 59 -3,-2.6 4,-2.6 1,-0.2 -1,-0.2 0.913 103.5 49.4 -62.6 -44.7 4.8 22.5 13.8 34 34 A V H X S+ 0 0 1 -4,-0.8 4,-1.7 -3,-0.3 7,-0.3 0.870 107.3 55.9 -64.1 -35.9 6.9 23.6 10.9 35 35 A A H < S+ 0 0 28 -4,-1.7 6,-1.6 1,-0.2 -1,-0.2 0.907 113.1 40.7 -62.5 -41.9 9.1 20.5 11.1 36 36 A K H >< S+ 0 0 141 -4,-1.8 3,-2.3 1,-0.2 -2,-0.2 0.855 107.0 62.6 -74.7 -36.2 6.0 18.3 10.7 37 37 A L H 3< S+ 0 0 61 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.886 103.8 49.5 -56.1 -38.5 4.4 20.5 8.1 38 38 A T T 3< S- 0 0 13 -4,-1.7 -1,-0.3 3,-0.2 -2,-0.2 0.434 120.7-115.3 -79.7 1.4 7.4 19.7 5.9 39 39 A N S < S- 0 0 145 -3,-2.3 -3,-0.1 1,-0.1 -2,-0.1 -0.128 90.8 -13.5 90.8 -36.9 6.8 16.1 6.7 40 40 A S S S+ 0 0 102 -5,-0.2 -4,-0.2 -6,-0.2 -5,-0.1 0.144 94.0 137.2 170.5 51.5 10.1 15.9 8.5 41 41 A D - 0 0 60 -6,-1.6 -3,-0.2 -7,-0.3 4,-0.2 -0.865 48.3-119.6-113.9 148.4 12.4 18.8 7.8 42 42 A P S S- 0 0 109 0, 0.0 3,-0.4 0, 0.0 -1,-0.2 0.637 76.9 -36.4 -52.7-137.5 14.6 20.9 10.2 43 43 A I S S+ 0 0 86 1,-0.2 -17,-0.1 2,-0.1 -18,-0.1 0.022 82.9 142.7 -81.4 28.9 14.0 24.6 10.7 44 44 A M > - 0 0 77 1,-0.2 3,-1.8 2,-0.1 -1,-0.2 0.776 42.0-160.9 -40.5 -25.7 13.2 24.9 7.0 45 45 A N T 3 - 0 0 12 -3,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.495 50.1 -91.9 54.7 -0.2 10.7 27.4 8.5 46 46 A Q T 3>> + 0 0 15 3,-0.1 4,-5.1 4,-0.1 5,-0.6 0.925 59.5 178.6 63.7 46.4 9.0 26.8 5.1 47 47 A L H <>5S+ 0 0 56 -3,-1.8 4,-2.8 3,-0.2 5,-0.3 0.916 80.9 47.5 -43.6 -49.6 10.8 29.7 3.4 48 48 A D H >5S+ 0 0 106 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.975 124.5 27.3 -57.7 -62.4 9.0 28.7 0.2 49 49 A L H >5S+ 0 0 94 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.888 121.9 54.9 -70.2 -39.0 5.5 28.3 1.6 50 50 A L H X5S+ 0 0 5 -4,-5.1 4,-3.5 2,-0.2 5,-0.2 0.933 107.8 49.9 -59.9 -46.3 6.1 30.8 4.4 51 51 A H H X< S+ 0 0 60 -4,-2.8 3,-0.9 1,-0.3 4,-0.3 0.890 108.1 52.5 -55.7 -42.8 3.1 37.8 1.0 56 56 A R H 3< S+ 0 0 166 -4,-2.2 -1,-0.3 1,-0.3 3,-0.2 0.830 122.8 30.1 -63.3 -33.1 -0.6 36.9 0.7 57 57 A H T >< S+ 0 0 50 -4,-1.7 3,-2.4 -3,-0.5 4,-0.4 0.147 82.7 116.5-112.6 17.6 -1.2 38.2 4.2 58 58 A R G X S+ 0 0 71 -3,-0.9 3,-1.8 -4,-0.3 4,-0.4 0.843 70.7 65.8 -52.6 -34.1 1.5 40.9 4.2 59 59 A D G > S+ 0 0 79 -4,-0.3 3,-1.7 1,-0.3 4,-0.3 0.781 84.6 73.7 -59.2 -27.3 -1.4 43.3 4.5 60 60 A M G X S+ 0 0 11 -3,-2.4 3,-2.0 1,-0.3 -1,-0.3 0.805 82.9 67.8 -57.8 -29.8 -2.0 41.8 7.9 61 61 A C G X> S+ 0 0 6 -3,-1.8 4,-2.5 -4,-0.4 3,-0.9 0.808 91.7 61.2 -61.1 -28.3 1.1 43.7 9.1 62 62 A E G <4 S+ 0 0 97 -3,-1.7 -1,-0.3 -4,-0.4 -2,-0.2 0.618 86.3 76.1 -73.2 -12.8 -0.8 46.9 8.6 63 63 A K G <4 S- 0 0 139 -3,-2.0 -1,-0.3 -4,-0.3 -2,-0.1 0.199 124.7 -5.7 -84.8 19.4 -3.4 45.7 11.2 64 64 A W T <4 S- 0 0 93 -3,-0.9 -2,-0.2 2,-0.1 -3,-0.1 0.190 70.6-145.8-172.8 -43.4 -1.0 46.5 14.0 65 65 A K < + 0 0 108 -4,-2.5 -3,-0.1 -5,-0.2 -4,-0.1 0.463 66.0 119.0 72.2 -1.2 2.4 47.6 12.7 66 66 A S - 0 0 45 -5,-0.1 -1,-0.2 1,-0.1 -2,-0.1 -0.075 57.6-146.6 -83.9-173.0 3.8 45.9 15.8 67 67 A K S > S+ 0 0 114 -3,-0.1 4,-1.7 3,-0.1 5,-0.1 0.679 86.8 37.3-121.3 -64.8 6.1 42.9 16.0 68 68 A E H > S+ 0 0 161 1,-0.2 4,-1.6 2,-0.2 -2,-0.0 0.884 116.8 53.7 -62.8 -39.3 5.6 40.5 18.9 69 69 A D H > S+ 0 0 96 1,-0.2 4,-1.7 2,-0.2 3,-0.3 0.931 105.8 52.6 -62.5 -44.3 1.8 40.9 18.7 70 70 A I H > S+ 0 0 3 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.915 105.2 55.5 -56.4 -44.1 1.8 40.0 15.0 71 71 A L H X S+ 0 0 20 -4,-1.7 4,-2.4 1,-0.2 -1,-0.2 0.875 103.3 56.5 -56.5 -38.6 3.7 36.8 15.8 72 72 A H H X S+ 0 0 111 -4,-1.6 4,-1.7 -3,-0.3 -1,-0.2 0.928 108.2 45.9 -60.3 -45.8 1.0 35.9 18.3 73 73 A K H X S+ 0 0 78 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.939 112.0 50.5 -63.3 -47.8 -1.7 36.1 15.6 74 74 A L H X S+ 0 0 7 -4,-2.6 4,-3.9 1,-0.2 5,-0.2 0.881 105.7 58.0 -58.6 -38.1 0.4 34.1 13.1 75 75 A N H X S+ 0 0 14 -4,-2.4 4,-2.2 -5,-0.2 -1,-0.2 0.933 108.1 44.8 -58.4 -47.1 1.0 31.4 15.8 76 76 A E H X S+ 0 0 111 -4,-1.7 4,-1.5 2,-0.2 -1,-0.2 0.889 117.2 45.5 -65.6 -37.1 -2.8 30.8 16.2 77 77 A Q H X S+ 0 0 84 -4,-2.2 4,-2.6 2,-0.2 -2,-0.2 0.908 109.9 53.8 -73.1 -38.9 -3.3 30.8 12.4 78 78 A W H < S+ 0 0 29 -4,-3.9 -2,-0.2 1,-0.2 -1,-0.2 0.914 107.2 53.3 -58.2 -42.5 -0.3 28.5 11.9 79 79 A N H < S+ 0 0 86 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.882 117.9 34.9 -60.3 -41.3 -1.9 26.1 14.4 80 80 A K H < 0 0 155 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.666 360.0 360.0 -88.0 -17.8 -5.1 26.1 12.5 81 81 A D < 0 0 131 -4,-2.6 -1,-0.2 -5,-0.1 -4,-0.0 -0.910 360.0 360.0-127.4 360.0 -3.4 26.3 9.1