==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-MAY-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 05-FEB-13 2M4G . COMPND 2 MOLECULE: MURINE NOROVIRUS VPG PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MURINE NOROVIRUS 1; . AUTHOR E.N.LEEN,R.KWOK,J.R.BIRTLEY,S.N.PRATER,P.J.SIMPSON,S.MATTHEW . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7073.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 26.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 11 A G 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.1 -23.9 2.8 13.4 2 12 A R - 0 0 179 2,-0.1 2,-2.3 3,-0.0 0, 0.0 -0.985 360.0-111.3-155.3 146.7 -25.3 2.9 9.9 3 13 A P + 0 0 136 0, 0.0 2,-1.0 0, 0.0 3,-0.1 -0.387 53.1 156.0 -79.6 63.3 -26.4 0.4 7.2 4 14 A G - 0 0 26 -2,-2.3 3,-0.2 1,-0.2 -2,-0.1 -0.787 21.4-176.0 -93.2 98.2 -23.6 1.2 4.9 5 15 A V S S+ 0 0 143 -2,-1.0 2,-0.4 1,-0.3 -1,-0.2 0.880 79.8 21.4 -59.9 -38.6 -23.2 -1.9 2.7 6 16 A F S S- 0 0 85 -3,-0.1 -1,-0.3 25,-0.1 2,-0.1 -0.979 76.7-167.2-136.0 118.7 -20.2 -0.4 1.0 7 17 A R - 0 0 79 -2,-0.4 25,-0.1 -3,-0.2 3,-0.0 -0.456 14.6-179.8 -97.5 174.9 -18.1 2.4 2.5 8 18 A T - 0 0 69 -2,-0.1 2,-2.9 24,-0.0 -1,-0.1 0.496 12.0-163.2-140.7 -34.0 -15.5 4.6 0.9 9 19 A R S S- 0 0 140 1,-0.2 23,-0.0 2,-0.1 -2,-0.0 -0.311 83.2 -36.2 70.0 -56.0 -14.1 7.0 3.5 10 20 A G S S+ 0 0 50 -2,-2.9 2,-0.7 2,-0.1 -1,-0.2 0.087 81.7 169.1 168.1 56.9 -12.7 9.1 0.7 11 21 A L - 0 0 27 4,-0.1 2,-0.1 3,-0.1 -2,-0.1 -0.780 15.8-159.8 -93.9 117.4 -11.5 6.9 -2.1 12 22 A T > - 0 0 81 -2,-0.7 4,-2.9 1,-0.1 5,-0.3 -0.279 42.6 -86.6 -81.0 175.5 -10.6 8.6 -5.3 13 23 A D H > S+ 0 0 117 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.881 128.8 50.6 -51.2 -41.7 -10.4 6.9 -8.7 14 24 A E H > S+ 0 0 146 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.938 113.5 41.4 -66.6 -49.6 -6.8 5.9 -8.0 15 25 A E H > S+ 0 0 61 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.879 118.5 48.8 -65.4 -36.4 -7.3 4.5 -4.5 16 26 A Y H X S+ 0 0 94 -4,-2.9 4,-2.8 2,-0.2 -2,-0.2 0.859 109.5 51.3 -71.0 -36.8 -10.5 2.8 -5.8 17 27 A D H X S+ 0 0 66 -4,-2.7 4,-2.7 -5,-0.3 -2,-0.2 0.913 111.5 47.6 -66.6 -42.2 -8.6 1.4 -8.9 18 28 A E H X S+ 0 0 66 -4,-2.5 4,-3.0 2,-0.2 -2,-0.2 0.918 112.3 50.8 -59.2 -45.3 -6.0 0.0 -6.6 19 29 A F H X S+ 0 0 2 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.891 108.8 50.7 -58.8 -43.5 -8.8 -1.3 -4.5 20 30 A K H X S+ 0 0 95 -4,-2.8 4,-2.9 2,-0.2 -2,-0.2 0.933 112.2 46.8 -61.3 -46.9 -10.4 -2.9 -7.6 21 31 A K H X S+ 0 0 120 -4,-2.7 4,-2.0 2,-0.2 -2,-0.2 0.932 115.3 45.8 -57.9 -47.8 -7.0 -4.5 -8.4 22 32 A R H X S+ 0 0 34 -4,-3.0 4,-0.7 1,-0.2 -2,-0.2 0.841 113.6 50.0 -65.7 -34.0 -6.6 -5.7 -4.9 23 33 A R H <>S+ 0 0 92 -4,-2.7 5,-3.2 2,-0.2 3,-0.4 0.864 107.8 52.1 -73.3 -37.4 -10.2 -6.9 -4.9 24 34 A E H ><5S+ 0 0 157 -4,-2.9 3,-2.0 1,-0.2 -2,-0.2 0.880 103.6 59.5 -62.7 -37.3 -9.7 -8.8 -8.1 25 35 A S H 3<5S+ 0 0 92 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.809 107.2 46.3 -58.1 -30.7 -6.7 -10.3 -6.4 26 36 A R T ><5S- 0 0 118 -4,-0.7 3,-1.9 -3,-0.4 -1,-0.3 0.199 120.6-110.7 -97.5 13.4 -9.2 -11.6 -3.8 27 37 A G T < 5S- 0 0 69 -3,-2.0 -3,-0.2 1,-0.3 -2,-0.1 0.791 78.0 -51.0 63.6 27.3 -11.6 -12.8 -6.6 28 38 A G T 3 - 0 0 57 -2,-0.3 4,-1.7 1,-0.1 3,-0.5 -0.305 35.7-106.5 -80.6 168.2 -14.6 -5.3 0.8 32 42 A I H > S+ 0 0 2 1,-0.2 4,-4.1 2,-0.2 5,-0.2 0.875 120.7 58.7 -62.1 -33.7 -13.6 -1.7 1.2 33 43 A D H > S+ 0 0 89 2,-0.3 4,-2.3 1,-0.2 -1,-0.2 0.842 102.5 52.5 -67.0 -32.8 -13.0 -2.3 4.9 34 44 A D H > S+ 0 0 71 -3,-0.5 4,-1.6 2,-0.2 -1,-0.2 0.901 116.0 41.3 -65.0 -40.0 -10.4 -4.9 4.0 35 45 A Y H X S+ 0 0 3 -4,-1.7 4,-2.2 2,-0.2 -2,-0.3 0.920 113.3 52.4 -69.5 -45.6 -8.8 -2.2 1.8 36 46 A L H X S+ 0 0 22 -4,-4.1 4,-2.0 1,-0.2 -2,-0.2 0.827 107.2 54.3 -62.3 -33.1 -9.4 0.5 4.4 37 47 A A H < S+ 0 0 54 -4,-2.3 -1,-0.2 2,-0.2 -2,-0.2 0.929 115.2 37.5 -64.8 -46.8 -7.6 -1.7 6.9 38 48 A D H X S+ 0 0 61 -4,-1.6 4,-3.2 1,-0.2 3,-0.3 0.697 110.9 62.2 -79.3 -18.4 -4.6 -2.0 4.7 39 49 A R H X S+ 0 0 27 -4,-2.2 4,-2.4 2,-0.3 5,-0.3 0.883 95.8 58.9 -68.2 -38.6 -5.1 1.6 3.7 40 50 A E H < S+ 0 0 108 -4,-2.0 4,-0.3 1,-0.2 -1,-0.2 0.658 112.4 42.2 -60.2 -17.8 -4.5 2.3 7.4 41 51 A R H >> S+ 0 0 121 -3,-0.3 4,-2.7 -4,-0.2 3,-0.6 0.868 108.1 56.4 -90.3 -52.6 -1.2 0.6 6.6 42 52 A E H 3< S+ 0 0 71 -4,-3.2 4,-0.5 1,-0.3 -2,-0.2 0.826 107.8 49.3 -50.0 -41.0 -0.5 2.3 3.2 43 53 A E T 3< S+ 0 0 65 -4,-2.4 4,-0.4 2,-0.2 -1,-0.3 0.857 113.6 46.0 -71.0 -34.5 -0.7 5.7 4.7 44 54 A E T <4 S+ 0 0 112 -3,-0.6 3,-0.5 -5,-0.3 -2,-0.2 0.827 116.5 45.8 -71.1 -32.4 1.6 4.7 7.5 45 55 A L S < S+ 0 0 107 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.478 96.7 76.1 -90.1 -4.8 3.9 3.1 4.9 46 56 A L S S+ 0 0 138 -4,-0.5 2,-0.3 -5,-0.3 -1,-0.2 0.725 105.1 29.3 -77.2 -24.2 3.6 6.2 2.7 47 57 A E S S+ 0 0 108 -3,-0.5 3,-0.1 -4,-0.4 -1,-0.0 -0.903 103.7 22.1-134.9 161.2 5.9 8.1 4.9 48 58 A R S S+ 0 0 141 -2,-0.3 2,-2.9 1,-0.2 5,-0.1 0.189 98.2 46.9 68.0 165.7 8.9 7.2 7.2 49 59 A D S > S+ 0 0 61 1,-0.3 3,-1.9 2,-0.1 5,-0.4 -0.348 106.2 60.1 71.2 -66.5 11.1 4.1 7.1 50 60 A E T 3 S+ 0 0 104 -2,-2.9 -1,-0.3 1,-0.3 -5,-0.0 0.628 89.4 73.7 -67.8 -13.5 11.7 4.2 3.4 51 61 A E T 3 S- 0 0 147 1,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.420 115.2-109.6 -79.9 1.2 13.2 7.6 3.9 52 62 A E S < S+ 0 0 86 -3,-1.9 7,-0.1 -4,-0.0 -2,-0.1 0.736 90.3 31.9 74.6 123.0 16.2 5.7 5.4 53 63 A A S S+ 0 0 48 -4,-0.2 6,-0.2 5,-0.2 3,-0.1 0.894 86.6 98.7 71.7 44.4 17.2 5.7 9.1 54 64 A I + 0 0 75 -5,-0.4 2,-2.2 4,-0.2 5,-0.1 0.564 61.3 76.0-121.7 -31.4 13.7 6.0 10.7 55 65 A F S S- 0 0 67 -6,-0.3 2,-0.3 3,-0.2 3,-0.2 -0.300 120.8 -42.9 -81.1 55.5 13.0 2.4 11.5 56 66 A G S S- 0 0 49 -2,-2.2 -7,-0.1 1,-0.1 0, 0.0 -0.846 94.4 -48.4 120.3-159.1 15.3 2.5 14.5 57 67 A D S S+ 0 0 181 -2,-0.3 2,-0.2 2,-0.0 -1,-0.1 0.483 121.1 46.4 -91.6 -5.0 18.8 3.9 15.0 58 68 A G - 0 0 35 -3,-0.2 -5,-0.2 1,-0.0 -3,-0.2 -0.621 60.7-150.2-126.0-174.8 20.0 2.3 11.8 59 69 A F > + 0 0 80 -2,-0.2 3,-1.7 -6,-0.2 -3,-0.1 0.009 45.3 136.8-147.1 29.9 19.1 1.8 8.2 60 70 A G G > + 0 0 51 1,-0.3 3,-1.0 2,-0.2 5,-0.1 0.751 64.5 69.7 -56.1 -28.5 20.7 -1.5 7.4 61 71 A L G 3 S+ 0 0 124 1,-0.3 -1,-0.3 -3,-0.0 -2,-0.0 0.875 119.7 17.5 -57.6 -38.9 17.6 -2.6 5.5 62 72 A K G < S+ 0 0 87 -3,-1.7 -1,-0.3 2,-0.0 2,-0.2 -0.087 89.2 148.4-126.5 32.4 18.3 -0.1 2.7 63 73 A A < - 0 0 14 -3,-1.0 2,-2.1 1,-0.1 -3,-0.1 -0.524 56.5-117.0 -70.6 132.4 21.9 0.7 3.4 64 74 A T - 0 0 114 -2,-0.2 2,-1.6 1,-0.1 3,-0.2 -0.487 35.5-174.3 -73.2 80.9 23.8 1.5 0.2 65 75 A R + 0 0 195 -2,-2.1 -1,-0.1 1,-0.2 -2,-0.0 -0.626 13.2 167.5 -79.8 87.7 26.3 -1.3 0.3 66 76 A R - 0 0 170 -2,-1.6 -1,-0.2 3,-0.0 -2,-0.0 0.946 15.3-173.5 -66.0 -48.1 28.5 -0.4 -2.6 67 77 A S + 0 0 84 -3,-0.2 3,-0.2 1,-0.1 -2,-0.1 0.966 21.3 157.5 52.2 67.5 31.1 -3.0 -1.6 68 78 A R + 0 0 176 1,-0.2 2,-0.6 0, 0.0 -1,-0.1 0.521 66.9 61.9 -95.0 -8.5 33.8 -2.1 -4.1 69 79 A K + 0 0 185 4,-0.0 2,-0.3 2,-0.0 -1,-0.2 -0.812 68.4 124.6-118.2 87.3 36.4 -3.7 -1.8 70 80 A A + 0 0 41 -2,-0.6 3,-0.4 -3,-0.2 0, 0.0 -0.785 23.3 169.2-149.2 99.1 35.4 -7.4 -1.5 71 81 A E S S+ 0 0 189 1,-0.3 2,-0.3 -2,-0.3 3,-0.1 0.722 91.2 31.2 -80.3 -22.5 37.9 -10.1 -2.3 72 82 A R + 0 0 184 1,-0.1 -1,-0.3 0, 0.0 3,-0.1 -0.703 65.0 164.2-136.9 80.7 35.5 -12.6 -0.7 73 83 A A S S+ 0 0 73 -3,-0.4 2,-0.5 -2,-0.3 -1,-0.1 0.866 79.7 33.2 -65.7 -37.7 31.9 -11.5 -1.2 74 84 A K 0 0 172 1,-0.2 -1,-0.2 -3,-0.1 0, 0.0 -0.988 360.0 360.0-122.5 123.8 30.7 -15.0 -0.3 75 85 A L 0 0 219 -2,-0.5 -1,-0.2 -3,-0.1 -2,-0.1 0.923 360.0 360.0 -86.6 360.0 32.6 -17.1 2.2