==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-AUG-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 28-JUN-13 2MA5 . COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 5B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HASSAN,T.A.RAMELOT,Y.YANG,J.R.CORT,H.JANJUA,E.KOHAN,D.LEE, . 61 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5277.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 50.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 8.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 16.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 14.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 148 0, 0.0 3,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 14.1 3.2 0.7 -2.7 2 2 A H + 0 0 149 1,-0.2 0, 0.0 3,-0.1 0, 0.0 0.618 360.0 85.9 -90.1 -12.2 6.0 -1.9 -1.7 3 3 A M S S+ 0 0 148 1,-0.3 26,-0.4 25,-0.0 -1,-0.2 0.621 96.7 42.8 -64.1 -14.2 4.7 -4.6 -4.1 4 4 A C S S- 0 0 11 -3,-0.5 2,-1.8 24,-0.1 -1,-0.3 -0.807 78.6-159.6-133.4 86.5 6.9 -2.9 -6.8 5 5 A P + 0 0 48 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 -0.522 48.0 124.1 -68.8 81.0 10.4 -1.9 -5.3 6 6 A A - 0 0 29 -2,-1.8 3,-0.2 1,-0.1 -2,-0.1 -0.981 54.6-151.9-144.3 130.6 11.2 0.8 -7.9 7 7 A V S S+ 0 0 158 -2,-0.3 2,-1.9 1,-0.2 -1,-0.1 0.967 99.1 53.8 -65.4 -55.2 12.1 4.5 -7.3 8 8 A S S S+ 0 0 90 26,-0.0 2,-1.0 2,-0.0 -1,-0.2 -0.570 80.2 171.1 -78.1 74.2 10.8 5.6 -10.8 9 9 A C - 0 0 38 -2,-1.9 2,-0.6 -3,-0.2 25,-0.1 -0.781 19.0-162.7 -97.9 92.3 7.3 4.0 -10.1 10 10 A L - 0 0 101 -2,-1.0 24,-0.2 21,-0.1 21,-0.1 -0.699 11.2-159.3 -71.9 113.6 4.9 5.1 -12.9 11 11 A Q + 0 0 149 -2,-0.6 -2,-0.0 22,-0.1 -1,-0.0 -0.903 13.9 177.7-105.3 107.8 1.5 4.3 -11.4 12 12 A P S S- 0 0 38 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.346 70.4 -52.5 -72.1-145.5 -1.5 3.9 -14.0 13 13 A E S S- 0 0 177 1,-0.1 2,-0.7 0, 0.0 -2,-0.0 0.505 87.5-112.3 -68.5 -6.7 -5.0 3.0 -12.8 14 14 A G S S+ 0 0 35 0, 0.0 2,-1.1 0, 0.0 3,-0.4 -0.824 104.6 37.3 116.6 -86.1 -3.0 0.1 -11.1 15 15 A D S S+ 0 0 160 -2,-0.7 3,-0.0 1,-0.2 0, 0.0 -0.596 95.3 96.7 -95.4 66.5 -4.1 -3.2 -12.7 16 16 A E S S+ 0 0 124 -2,-1.1 -1,-0.2 2,-0.0 0, 0.0 0.709 72.4 47.5-114.8 -58.7 -4.3 -1.5 -16.2 17 17 A V S S- 0 0 48 -3,-0.4 2,-0.3 1,-0.1 14,-0.0 0.012 88.9 -88.0 -86.2-177.9 -1.0 -2.1 -18.1 18 18 A D - 0 0 107 -3,-0.0 14,-2.1 1,-0.0 15,-0.3 -0.797 41.1-155.9 -98.2 140.9 1.2 -5.3 -18.7 19 19 A W E -A 31 0A 81 -2,-0.3 2,-0.3 12,-0.3 12,-0.3 -0.377 5.9-151.4-105.7-178.0 4.0 -6.3 -16.2 20 20 A V E -A 30 0A 14 10,-1.8 10,-2.6 -2,-0.1 2,-0.7 -0.951 15.9-130.0-157.9 136.6 7.2 -8.3 -16.2 21 21 A Q E -A 29 0A 80 -2,-0.3 2,-1.3 8,-0.2 26,-0.3 -0.860 13.1-149.6 -95.9 112.5 9.1 -10.3 -13.5 22 22 A C E > +A 28 0A 1 6,-2.1 5,-1.5 -2,-0.7 6,-0.7 -0.722 22.1 176.4 -77.9 91.0 12.8 -9.5 -13.2 23 23 A D T >>5 + 0 0 101 -2,-1.3 3,-2.8 4,-0.2 4,-2.0 0.984 41.5 108.8 -57.2 -80.3 14.1 -12.9 -12.1 24 24 A G T 345S- 0 0 44 1,-0.3 -1,-0.2 2,-0.2 24,-0.1 -0.197 111.1 -40.2 43.3 -83.8 17.9 -12.2 -11.9 25 25 A S T 345S+ 0 0 75 -2,-0.9 -1,-0.3 -3,-0.3 -2,-0.1 0.031 142.2 46.3-159.8 27.0 18.3 -12.3 -8.1 26 26 A C T <45S- 0 0 34 -3,-2.8 -3,-0.2 -4,-0.4 -2,-0.2 0.509 72.1-154.7-143.1 -41.3 15.1 -10.4 -6.9 27 27 A N << + 0 0 70 -4,-2.0 -4,-0.2 -5,-1.5 2,-0.2 0.648 37.7 159.1 65.3 19.3 12.1 -11.8 -8.8 28 28 A Q E -A 22 0A 77 -6,-0.7 -6,-2.1 -5,-0.2 2,-0.4 -0.533 39.9-124.8 -79.8 137.1 10.2 -8.5 -8.3 29 29 A W E +A 21 0A 120 -26,-0.4 2,-0.3 -8,-0.2 -8,-0.2 -0.690 32.0 177.7 -86.6 128.6 7.3 -7.6 -10.6 30 30 A F E -A 20 0A 8 -10,-2.6 -10,-1.8 -2,-0.4 2,-0.2 -0.974 32.4-114.7-129.3 143.4 7.5 -4.2 -12.5 31 31 A H E > -A 19 0A 11 -2,-0.3 4,-1.4 -12,-0.3 -12,-0.3 -0.539 31.1-121.2 -69.3 141.3 5.1 -2.6 -15.1 32 32 A Q H >>S+ 0 0 56 -14,-2.1 5,-2.1 1,-0.2 4,-0.6 0.877 115.7 49.7 -53.3 -40.5 6.9 -2.3 -18.5 33 33 A V H 45S+ 0 0 72 -15,-0.3 -1,-0.2 3,-0.2 3,-0.2 0.865 103.2 62.0 -65.3 -38.2 6.3 1.6 -18.3 34 34 A C H 45S+ 0 0 8 1,-0.2 -2,-0.2 -3,-0.2 -1,-0.2 0.901 121.3 19.8 -56.3 -50.2 7.8 1.8 -14.7 35 35 A V H <5S- 0 0 38 -4,-1.4 -1,-0.2 -25,-0.1 -2,-0.2 0.271 108.6-117.3-109.3 5.9 11.3 0.5 -15.6 36 36 A G T <5 - 0 0 53 -4,-0.6 2,-0.4 -5,-0.2 -3,-0.2 0.917 37.0-166.4 59.5 52.7 11.0 1.3 -19.4 37 37 A V < - 0 0 12 -5,-2.1 -1,-0.2 -6,-0.1 10,-0.1 -0.604 19.7-126.5 -74.7 119.3 11.4 -2.2 -20.8 38 38 A S >> - 0 0 51 -2,-0.4 4,-2.3 1,-0.1 3,-0.6 -0.463 22.0-118.4 -63.1 135.6 12.0 -2.2 -24.5 39 39 A P H 3> S+ 0 0 98 0, 0.0 4,-1.3 0, 0.0 -1,-0.1 0.636 114.4 58.9 -56.7 -15.4 9.4 -4.5 -26.4 40 40 A E H 3> S+ 0 0 115 2,-0.2 4,-2.1 3,-0.1 6,-0.2 0.946 111.9 37.5 -72.0 -52.1 12.4 -6.7 -27.6 41 41 A M H <4>S+ 0 0 79 -3,-0.6 5,-1.6 1,-0.2 4,-0.4 0.821 117.2 53.2 -67.6 -33.4 13.5 -7.5 -24.0 42 42 A A H <5S+ 0 0 20 -4,-2.3 -1,-0.2 2,-0.2 -2,-0.2 0.834 108.1 49.5 -71.8 -36.4 9.8 -7.7 -22.9 43 43 A E H <5S+ 0 0 154 -4,-1.3 -2,-0.2 -5,-0.2 -1,-0.2 0.918 114.3 45.0 -65.2 -45.2 9.1 -10.2 -25.7 44 44 A K T <5S- 0 0 139 -4,-2.1 -2,-0.2 2,-0.1 -1,-0.2 0.586 105.2-137.2 -70.6 -15.4 12.1 -12.2 -24.4 45 45 A E T 5 + 0 0 153 -4,-0.4 2,-0.9 1,-0.2 -3,-0.2 0.559 62.0 135.9 65.3 12.8 10.8 -11.6 -20.8 46 46 A D < + 0 0 84 -5,-1.6 2,-0.4 -6,-0.2 -1,-0.2 -0.781 14.3 144.3-102.3 91.6 14.5 -10.9 -20.1 47 47 A Y - 0 0 62 -2,-0.9 2,-0.6 -26,-0.3 -24,-0.1 -0.928 23.9-172.1-132.2 106.6 14.9 -7.8 -17.9 48 48 A I - 0 0 73 -2,-0.4 -2,-0.0 -26,-0.1 -26,-0.0 -0.910 19.7-141.8-100.7 113.2 17.7 -7.8 -15.4 49 49 A C >> - 0 0 20 -2,-0.6 4,-1.7 1,-0.1 3,-0.6 -0.287 28.3 -97.6 -74.3 164.0 17.5 -4.8 -13.0 50 50 A V H 3> S+ 0 0 114 1,-0.2 4,-2.7 2,-0.2 5,-0.3 0.852 123.0 53.8 -50.5 -47.7 20.6 -2.8 -11.7 51 51 A R H 3> S+ 0 0 191 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.890 110.1 48.0 -54.1 -44.1 20.6 -4.7 -8.3 52 52 A C H <4 S+ 0 0 3 -3,-0.6 -1,-0.2 2,-0.2 -2,-0.2 0.838 114.7 45.3 -67.6 -36.1 20.7 -8.1 -10.2 53 53 A T H >< S+ 0 0 85 -4,-1.7 3,-1.0 1,-0.2 4,-0.3 0.906 116.0 44.2 -74.4 -44.1 23.5 -7.0 -12.6 54 54 A V H 3< S+ 0 0 119 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.645 119.4 44.1 -78.1 -16.1 25.8 -5.3 -9.8 55 55 A K T 3< S+ 0 0 170 -4,-1.1 -1,-0.2 -5,-0.3 -2,-0.2 0.002 85.8 95.2-117.0 25.3 25.1 -8.4 -7.5 56 56 A D S < S- 0 0 118 -3,-1.0 -2,-0.1 -5,-0.0 -1,-0.1 0.761 83.0-140.9 -79.4 -28.4 25.7 -10.9 -10.3 57 57 A A - 0 0 78 -4,-0.3 -2,-0.1 -3,-0.2 -3,-0.1 0.987 21.6-148.1 60.5 85.8 29.4 -11.3 -9.2 58 58 A P - 0 0 64 0, 0.0 3,-0.1 0, 0.0 -4,-0.0 -0.039 25.3-104.5 -76.7-179.9 31.3 -11.5 -12.6 59 59 A S S S+ 0 0 126 1,-0.2 2,-0.3 0, 0.0 -2,-0.0 0.491 112.4 38.4 -80.9 -6.0 34.5 -13.4 -13.6 60 60 A R 0 0 230 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.916 360.0 360.0-150.3 117.0 36.3 -10.0 -13.5 61 61 A K 0 0 218 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.800 360.0 360.0-150.1 360.0 35.7 -7.2 -11.1