==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 22-DEC-02 1NI8 . COMPND 2 MOLECULE: DNA-BINDING PROTEIN H-NS; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR V.BLOCH,Y.YANG,E.MARGEAT,A.CHAVANIEU,M.T.AUG,B.ROBERT, . 92 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6123.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 82.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 66 71.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S > 0 0 75 0, 0.0 4,-1.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 55.4 3.7 -11.3 -4.0 2 2 A E H > + 0 0 120 2,-0.2 4,-0.8 1,-0.1 48,-0.1 0.790 360.0 45.8 -86.4 -26.9 0.3 -12.2 -2.6 3 3 A A H > S+ 0 0 3 2,-0.2 4,-1.2 1,-0.1 -1,-0.1 0.804 112.0 51.7 -84.7 -28.3 -0.2 -9.0 -0.7 4 4 A L H > S+ 0 0 3 2,-0.2 4,-0.6 1,-0.2 -2,-0.2 0.893 109.1 49.3 -75.0 -38.5 0.9 -6.8 -3.7 5 5 A K H >X S+ 0 0 120 -4,-1.1 3,-0.6 1,-0.2 4,-0.6 0.841 107.2 56.4 -70.3 -29.5 -1.5 -8.5 -6.2 6 6 A I H >< S+ 0 0 31 -4,-0.8 3,-1.3 1,-0.2 7,-0.4 0.887 96.2 63.9 -69.1 -36.3 -4.4 -8.0 -3.7 7 7 A L H 3< S+ 0 0 0 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.2 0.785 93.0 65.0 -58.9 -23.7 -3.8 -4.2 -3.6 8 8 A N H << S+ 0 0 52 -3,-0.6 2,-1.1 -4,-0.6 -1,-0.3 0.850 93.3 63.5 -70.0 -30.6 -4.6 -4.2 -7.4 9 9 A N S+ 0 0 26 -2,-1.1 4,-3.1 1,-0.2 -1,-0.2 0.876 78.9 63.3 -60.3 -36.5 -9.6 -2.3 -4.6 11 11 A R H > S+ 0 0 189 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.917 104.6 48.1 -56.0 -40.8 -13.0 -4.1 -4.1 12 12 A T H > S+ 0 0 54 -3,-0.5 4,-1.6 2,-0.2 3,-0.3 0.967 114.2 43.9 -65.4 -50.1 -11.2 -6.8 -2.1 13 13 A L H X S+ 0 0 2 -4,-1.7 4,-2.7 -7,-0.4 5,-0.2 0.867 106.7 64.6 -63.1 -31.4 -9.3 -4.3 0.0 14 14 A R H X S+ 0 0 140 -4,-3.1 4,-1.3 1,-0.2 -1,-0.2 0.934 103.3 45.2 -57.1 -46.4 -12.6 -2.4 0.4 15 15 A A H < S+ 0 0 62 -4,-1.7 4,-0.4 -3,-0.3 -1,-0.2 0.884 113.6 50.6 -66.9 -35.6 -14.2 -5.4 2.3 16 16 A Q H >< S+ 0 0 37 -4,-1.6 3,-1.0 1,-0.2 -2,-0.2 0.868 105.7 55.6 -71.0 -34.5 -11.0 -5.8 4.4 17 17 A A H >< S+ 0 0 3 -4,-2.7 3,-1.9 1,-0.2 -1,-0.2 0.836 94.7 67.7 -68.1 -30.1 -11.0 -2.0 5.4 18 18 A R T 3< S+ 0 0 178 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.746 100.0 51.1 -62.5 -20.2 -14.6 -2.3 6.7 19 19 A E T < S+ 0 0 167 -3,-1.0 2,-0.3 -4,-0.4 -1,-0.3 0.268 105.8 65.6-101.2 13.7 -13.2 -4.5 9.5 20 20 A C S < S- 0 0 27 -3,-1.9 2,-0.1 -4,-0.0 0, 0.0 -0.919 81.0-110.2-132.6 159.6 -10.4 -2.1 10.6 21 21 A T > - 0 0 69 -2,-0.3 4,-1.4 1,-0.1 3,-0.2 -0.389 31.4-111.2 -83.1 164.6 -10.1 1.4 12.1 22 22 A L H > S+ 0 0 39 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.881 114.9 61.6 -64.2 -37.2 -8.9 4.5 10.2 23 23 A E H > S+ 0 0 136 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.917 104.8 47.4 -57.9 -41.1 -5.7 4.7 12.4 24 24 A T H > S+ 0 0 46 1,-0.2 4,-2.0 -3,-0.2 -1,-0.2 0.876 109.6 54.4 -68.6 -33.6 -4.6 1.3 11.1 25 25 A L H X S+ 0 0 4 -4,-1.4 4,-1.9 2,-0.2 -2,-0.2 0.856 104.8 54.3 -68.5 -32.2 -5.4 2.4 7.5 26 26 A E H X S+ 0 0 66 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.939 108.6 47.5 -68.1 -43.5 -3.2 5.5 8.0 27 27 A E H X S+ 0 0 108 -4,-1.7 4,-2.2 1,-0.2 5,-0.2 0.927 110.0 53.5 -63.1 -42.3 -0.2 3.3 9.0 28 28 A M H X S+ 0 0 4 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.911 107.9 50.5 -60.2 -40.1 -0.8 0.9 6.0 29 29 A L H X S+ 0 0 12 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.892 108.0 54.0 -66.5 -36.1 -0.7 3.9 3.6 30 30 A E H X S+ 0 0 85 -4,-1.9 4,-2.4 2,-0.2 5,-0.2 0.952 107.8 48.8 -63.2 -48.2 2.6 5.1 5.1 31 31 A K H X S+ 0 0 35 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.932 111.9 48.8 -59.7 -44.5 4.3 1.7 4.5 32 32 A L H X S+ 0 0 4 -4,-2.0 4,-2.3 1,-0.2 5,-0.2 0.921 110.4 51.5 -63.8 -39.8 3.1 1.6 0.9 33 33 A E H X S+ 0 0 76 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.929 111.3 47.4 -62.8 -41.9 4.3 5.1 0.3 34 34 A V H X S+ 0 0 57 -4,-2.4 4,-2.4 2,-0.2 -1,-0.2 0.894 110.2 53.0 -67.0 -37.4 7.7 4.2 1.7 35 35 A V H X S+ 0 0 4 -4,-2.4 4,-1.5 -5,-0.2 -2,-0.2 0.924 112.8 43.4 -65.2 -41.2 7.8 1.0 -0.4 36 36 A V H X S+ 0 0 1 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.902 114.8 50.0 -70.9 -38.0 7.1 3.0 -3.6 37 37 A N H X S+ 0 0 80 -4,-2.4 4,-2.0 -5,-0.2 -2,-0.2 0.870 105.5 57.5 -68.4 -33.7 9.6 5.7 -2.5 38 38 A E H X S+ 0 0 77 -4,-2.4 4,-1.2 1,-0.2 -1,-0.2 0.932 110.4 43.1 -63.3 -41.5 12.3 3.0 -1.9 39 39 A R H X S+ 0 0 62 -4,-1.5 4,-2.3 1,-0.2 -1,-0.2 0.853 107.8 61.0 -72.9 -30.7 12.0 1.8 -5.5 40 40 A R H X S+ 0 0 90 -4,-1.9 4,-2.6 1,-0.2 5,-0.2 0.911 101.1 53.7 -62.3 -38.3 11.9 5.5 -6.6 41 41 A E H X S+ 0 0 121 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.915 109.3 48.0 -63.1 -40.1 15.4 5.9 -5.1 42 42 A E H X S+ 0 0 109 -4,-1.2 4,-1.9 2,-0.2 -1,-0.2 0.903 112.6 48.7 -68.1 -38.0 16.7 2.9 -7.1 43 43 A E H < S+ 0 0 109 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.900 113.3 46.8 -69.2 -38.3 15.1 4.3 -10.3 44 44 A S H < S+ 0 0 110 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.849 111.4 52.1 -72.5 -31.9 16.6 7.8 -9.8 45 45 A A H < 0 0 65 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.889 360.0 360.0 -72.0 -37.2 20.0 6.2 -9.0 46 46 A A < 0 0 131 -4,-1.9 0, 0.0 -5,-0.2 0, 0.0 -0.607 360.0 360.0 -76.3 360.0 20.0 4.2 -12.2 47 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 48 1 B S > 0 0 72 0, 0.0 4,-1.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 55.3 -7.6 -9.1 6.4 49 2 B E H > + 0 0 117 2,-0.2 4,-0.8 1,-0.1 -46,-0.1 0.787 360.0 45.8 -86.2 -27.0 -4.4 -10.9 5.3 50 3 B A H > S+ 0 0 3 2,-0.2 4,-1.2 1,-0.1 -1,-0.1 0.802 112.0 51.6 -84.5 -28.3 -3.3 -8.3 2.8 51 4 B L H > S+ 0 0 4 2,-0.2 4,-0.6 1,-0.2 -2,-0.2 0.896 109.1 49.2 -75.4 -38.3 -4.0 -5.4 5.2 52 5 B K H >X S+ 0 0 119 -4,-1.1 3,-0.6 1,-0.2 4,-0.6 0.841 107.2 56.5 -70.6 -29.3 -1.9 -6.9 8.0 53 6 B I H >< S+ 0 0 33 -4,-0.8 3,-1.3 1,-0.2 7,-0.4 0.885 96.2 63.8 -69.0 -36.1 1.0 -7.6 5.6 54 7 B L H 3< S+ 0 0 0 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.2 0.783 93.0 65.1 -59.3 -23.8 1.1 -3.8 4.7 55 8 B N H << S+ 0 0 51 -3,-0.6 2,-1.1 -4,-0.6 -1,-0.3 0.846 93.4 63.5 -69.8 -30.4 2.1 -3.2 8.4 56 9 B N S+ 0 0 28 -2,-1.1 4,-3.1 1,-0.2 -1,-0.2 0.876 78.9 63.3 -60.3 -36.8 7.3 -3.0 5.3 58 11 B R H > S+ 0 0 190 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.919 104.5 48.1 -56.0 -40.1 10.3 -5.4 5.3 59 12 B T H > S+ 0 0 55 -3,-0.5 4,-1.6 1,-0.2 3,-0.3 0.967 114.2 44.0 -66.0 -49.9 7.9 -8.1 3.9 60 13 B L H X S+ 0 0 1 -4,-1.7 4,-2.7 -7,-0.4 5,-0.2 0.866 106.8 64.6 -63.0 -31.6 6.4 -5.8 1.2 61 14 B R H X S+ 0 0 135 -4,-3.1 4,-1.3 1,-0.2 -1,-0.2 0.932 103.3 45.1 -57.0 -46.5 10.1 -4.7 0.5 62 15 B A H < S+ 0 0 61 -4,-1.6 4,-0.4 -3,-0.3 -1,-0.2 0.882 113.6 50.6 -66.6 -35.9 11.0 -8.2 -0.6 63 16 B Q H >< S+ 0 0 36 -4,-1.6 3,-1.0 1,-0.2 -2,-0.2 0.868 105.8 55.5 -70.9 -34.7 7.8 -8.4 -2.7 64 17 B A H >< S+ 0 0 3 -4,-2.7 3,-1.9 1,-0.2 -1,-0.2 0.832 94.7 67.8 -68.2 -29.5 8.5 -5.0 -4.4 65 18 B R T 3< S+ 0 0 180 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.742 100.0 51.0 -62.7 -19.9 11.9 -6.2 -5.6 66 19 B E T < S+ 0 0 168 -3,-1.0 2,-0.3 -4,-0.4 -1,-0.3 0.266 105.8 65.5-101.6 13.5 10.0 -8.7 -7.9 67 20 B C S < S- 0 0 25 -3,-1.9 2,-0.1 -4,-0.0 0, 0.0 -0.920 81.1-110.1-132.4 159.9 7.7 -6.0 -9.5 68 21 B T > - 0 0 71 -2,-0.3 4,-1.4 1,-0.1 3,-0.2 -0.384 31.4-111.3 -83.2 164.8 8.2 -2.9 -11.8 69 22 B L H > S+ 0 0 38 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.879 114.9 61.7 -64.5 -36.8 7.6 0.7 -10.6 70 23 B E H > S+ 0 0 136 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.916 104.7 47.4 -58.3 -40.6 4.5 1.1 -12.8 71 24 B T H > S+ 0 0 46 1,-0.2 4,-2.0 -3,-0.2 -1,-0.2 0.875 109.6 54.6 -68.9 -33.2 2.7 -1.8 -10.8 72 25 B L H X S+ 0 0 3 -4,-1.4 4,-1.9 2,-0.2 -2,-0.2 0.857 104.6 54.4 -68.7 -32.2 3.8 -0.1 -7.6 73 26 B E H X S+ 0 0 67 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.939 108.6 47.5 -67.8 -43.8 2.2 3.2 -8.7 74 27 B E H X S+ 0 0 108 -4,-1.7 4,-2.2 1,-0.2 5,-0.2 0.926 110.0 53.5 -63.3 -41.9 -1.2 1.5 -9.3 75 28 B M H X S+ 0 0 4 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.912 107.9 50.5 -60.6 -40.1 -0.9 -0.3 -5.9 76 29 B L H X S+ 0 0 11 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.891 108.0 53.8 -66.4 -36.4 -0.4 3.1 -4.2 77 30 B E H X S+ 0 0 85 -4,-1.9 4,-2.4 2,-0.2 5,-0.2 0.949 107.9 48.9 -63.3 -48.1 -3.4 4.5 -5.9 78 31 B K H X S+ 0 0 34 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.931 111.8 48.7 -59.6 -44.5 -5.7 1.7 -4.7 79 32 B L H X S+ 0 0 4 -4,-2.0 4,-2.3 1,-0.2 5,-0.2 0.921 110.4 51.6 -63.9 -39.9 -4.5 2.1 -1.1 80 33 B E H X S+ 0 0 77 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.927 111.3 47.5 -62.8 -41.7 -5.0 5.9 -1.3 81 34 B V H X S+ 0 0 56 -4,-2.4 4,-2.4 2,-0.2 -1,-0.2 0.894 110.2 52.9 -66.9 -37.5 -8.6 5.4 -2.5 82 35 B V H X S+ 0 0 4 -4,-2.3 4,-1.5 -5,-0.2 -2,-0.2 0.925 112.8 43.5 -65.0 -41.4 -9.3 2.8 0.2 83 36 B V H X S+ 0 0 1 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.901 114.8 49.9 -71.1 -37.9 -8.1 5.2 2.9 84 37 B N H X S+ 0 0 79 -4,-2.4 4,-2.0 -5,-0.2 -2,-0.2 0.867 105.6 57.6 -68.7 -33.5 -10.1 8.1 1.3 85 38 B E H X S+ 0 0 73 -4,-2.4 4,-1.2 1,-0.2 -1,-0.2 0.931 110.3 43.0 -63.2 -41.9 -13.2 5.9 1.1 86 39 B R H X S+ 0 0 63 -4,-1.5 4,-2.3 1,-0.2 -1,-0.2 0.851 107.9 60.9 -72.6 -30.8 -13.1 5.5 4.9 87 40 B R H X S+ 0 0 93 -4,-1.9 4,-2.6 1,-0.2 5,-0.2 0.911 101.2 53.7 -62.3 -38.4 -12.3 9.2 5.3 88 41 B E H X S+ 0 0 117 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.914 109.3 48.0 -63.2 -40.2 -15.6 10.0 3.6 89 42 B E H X S+ 0 0 108 -4,-1.2 4,-1.9 2,-0.2 -1,-0.2 0.902 112.6 48.7 -68.3 -37.8 -17.4 7.8 6.2 90 43 B E H < S+ 0 0 107 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.899 113.2 46.9 -69.3 -38.2 -15.5 9.4 9.1 91 44 B S H < S+ 0 0 110 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.850 111.4 52.1 -72.5 -31.6 -16.4 12.9 7.8 92 45 B A H < 0 0 64 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.889 360.0 360.0 -72.0 -37.4 -20.0 12.0 7.3 93 46 B A < 0 0 132 -4,-1.9 0, 0.0 -5,-0.2 0, 0.0 -0.609 360.0 360.0 -76.1 360.0 -20.4 10.7 10.9