==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 01-NOV-06 2NR2 . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.RICHTER,J.GSPONER,P.VARNAI,X.SALVATELLA,M.VENDRUSCOLO . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5158.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 71.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 17.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 65 0, 0.0 16,-2.7 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 132.7 12.5 -4.9 -3.0 2 2 A Q E -A 16 0A 96 14,-0.2 62,-2.9 12,-0.0 63,-0.4 -0.778 360.0-177.0-105.4 140.0 9.4 -6.7 -1.7 3 3 A I E -A 15 0A 1 12,-1.9 12,-2.5 -2,-0.4 2,-0.4 -0.955 21.7-127.7-125.9 153.0 6.7 -5.4 0.6 4 4 A F E -Ab 14 66A 59 61,-2.9 63,-2.8 -2,-0.3 2,-0.6 -0.833 11.0-159.3 -99.9 135.5 3.7 -7.0 2.1 5 5 A V E -Ab 13 67A 0 8,-2.7 8,-2.0 -2,-0.4 2,-0.5 -0.933 13.8-157.3-114.8 104.1 0.3 -5.5 1.7 6 6 A K E -Ab 12 68A 71 61,-3.8 63,-2.7 -2,-0.6 6,-0.2 -0.640 8.0-155.7 -82.2 126.0 -1.9 -6.9 4.5 7 7 A T - 0 0 31 4,-2.6 63,-0.1 -2,-0.5 -1,-0.0 -0.240 27.8-100.7 -83.9-169.0 -5.6 -6.8 3.8 8 8 A L S S+ 0 0 163 61,-0.2 -1,-0.1 1,-0.1 62,-0.1 0.962 115.1 44.2 -73.5 -57.9 -8.5 -6.8 6.2 9 9 A T S S- 0 0 137 1,-0.1 -1,-0.1 -3,-0.0 -3,-0.0 0.782 126.5 -84.7 -67.9 -22.9 -9.6 -10.4 6.1 10 10 A G S S+ 0 0 53 1,-0.3 2,-0.4 0, 0.0 -1,-0.1 0.523 78.0 139.0 130.9 22.4 -6.1 -11.9 6.2 11 11 A K - 0 0 92 2,-0.0 -4,-2.6 0, 0.0 2,-0.5 -0.753 37.1-154.5 -88.3 131.0 -4.8 -12.0 2.7 12 12 A T E -A 6 0A 63 -2,-0.4 2,-0.5 -6,-0.2 -6,-0.2 -0.969 8.0-164.1-109.6 124.4 -1.0 -11.1 2.4 13 13 A I E -A 5 0A 9 -8,-2.0 -8,-2.7 -2,-0.5 2,-0.7 -0.937 6.5-150.7-111.7 128.2 -0.1 -9.7 -1.0 14 14 A T E -A 4 0A 63 -2,-0.5 2,-0.3 -10,-0.2 -10,-0.2 -0.830 17.6-174.7-102.8 115.8 3.6 -9.5 -1.9 15 15 A L E -A 3 0A 6 -12,-2.5 -12,-1.9 -2,-0.7 2,-0.6 -0.716 23.0-133.0-105.5 157.3 4.5 -6.7 -4.2 16 16 A E E +A 2 0A 139 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.954 38.7 163.5-111.4 110.8 7.9 -5.9 -5.9 17 17 A V - 0 0 4 -16,-2.7 9,-0.0 -2,-0.6 -2,-0.0 -0.733 39.3-128.7-118.8 159.0 8.6 -2.3 -5.5 18 18 A E > - 0 0 115 -2,-0.3 3,-1.9 4,-0.1 38,-0.2 -0.879 28.8-127.4 -89.8 146.3 11.7 -0.1 -5.9 19 19 A P T 3 S+ 0 0 40 0, 0.0 38,-2.2 0, 0.0 37,-0.3 0.670 111.3 65.9 -73.5 -5.6 12.0 2.0 -2.8 20 20 A S T 3 S+ 0 0 87 36,-0.2 2,-0.3 35,-0.1 35,-0.0 0.234 84.8 108.4 -90.1 7.6 12.3 4.9 -5.1 21 21 A D < - 0 0 39 -3,-1.9 35,-1.9 1,-0.1 36,-0.2 -0.601 68.3-120.6 -85.2 144.1 8.7 4.1 -6.1 22 22 A T B > -E 55 0B 31 -2,-0.3 4,-1.1 33,-0.2 33,-0.2 -0.350 20.4-113.3 -82.9 160.5 5.7 6.2 -5.1 23 23 A I H > S+ 0 0 0 31,-2.0 4,-1.6 29,-0.9 3,-0.3 0.861 121.1 56.6 -57.8 -39.0 2.6 5.3 -3.1 24 24 A E H > S+ 0 0 114 28,-1.2 4,-1.7 30,-0.3 -1,-0.2 0.853 103.2 54.4 -47.5 -45.1 0.7 5.8 -6.2 25 25 A N H > S+ 0 0 62 27,-0.3 4,-1.3 2,-0.2 -2,-0.2 0.787 103.6 54.9 -72.6 -20.8 2.9 3.2 -7.9 26 26 A V H X S+ 0 0 0 -4,-1.1 4,-1.2 -3,-0.3 -2,-0.2 0.905 107.8 49.5 -76.2 -39.4 2.1 0.7 -5.2 27 27 A K H X S+ 0 0 15 -4,-1.6 4,-2.2 2,-0.2 -2,-0.2 0.869 107.0 55.8 -66.0 -41.7 -1.7 1.2 -5.8 28 28 A A H X S+ 0 0 48 -4,-1.7 4,-1.4 1,-0.2 -1,-0.2 0.864 105.3 52.7 -52.8 -43.8 -1.0 0.7 -9.6 29 29 A K H X S+ 0 0 69 -4,-1.3 4,-2.2 2,-0.2 -1,-0.2 0.793 109.2 48.7 -61.7 -32.2 0.6 -2.6 -8.7 30 30 A I H X>S+ 0 0 0 -4,-1.2 4,-2.7 2,-0.2 5,-1.7 0.860 106.3 54.8 -81.8 -32.1 -2.5 -3.6 -6.8 31 31 A Q H <5S+ 0 0 105 -4,-2.2 -2,-0.2 4,-0.2 -1,-0.2 0.864 113.5 44.8 -56.2 -38.7 -4.8 -2.6 -9.6 32 32 A D H <5S+ 0 0 141 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.915 122.0 37.9 -64.6 -50.4 -2.6 -5.0 -11.6 33 33 A K H <5S+ 0 0 122 -4,-2.2 -3,-0.2 3,-0.1 -2,-0.2 0.989 137.8 6.4 -71.5 -62.8 -2.7 -7.7 -9.0 34 34 A E T <5S- 0 0 81 -4,-2.7 -3,-0.2 -5,-0.1 -2,-0.1 0.760 92.9-116.5-101.3 -35.3 -6.2 -7.6 -7.5 35 35 A G < + 0 0 51 -5,-1.7 -4,-0.2 1,-0.3 -3,-0.1 0.447 60.6 146.3 105.9 11.1 -8.1 -5.2 -9.6 36 36 A I - 0 0 38 -6,-0.7 -1,-0.3 -9,-0.1 -2,-0.1 -0.567 48.1-124.9 -76.1 126.0 -8.8 -2.7 -7.0 37 37 A P >> - 0 0 55 0, 0.0 4,-1.0 0, 0.0 3,-0.7 -0.431 17.2-121.3 -66.0 154.3 -8.9 0.9 -8.3 38 38 A P T 34 S+ 0 0 47 0, 0.0 -10,-0.1 0, 0.0 -2,-0.0 0.745 104.2 74.6 -74.1 -9.6 -6.7 3.4 -6.6 39 39 A D T 34 S+ 0 0 147 1,-0.2 -3,-0.0 3,-0.0 33,-0.0 0.891 103.3 38.0 -60.0 -44.4 -9.6 5.6 -5.7 40 40 A Q T <4 S+ 0 0 55 -3,-0.7 32,-3.3 31,-0.1 2,-0.6 0.736 94.6 103.2 -79.6 -29.6 -10.6 3.2 -3.0 41 41 A Q E < +C 71 0A 3 -4,-1.0 2,-0.4 30,-0.2 30,-0.2 -0.401 42.3 175.2 -66.7 107.7 -7.1 2.2 -1.9 42 42 A R E -C 70 0A 47 28,-3.5 28,-2.6 -2,-0.6 2,-0.4 -0.941 17.1-149.5-101.4 139.3 -5.9 3.8 1.4 43 43 A L E -C 69 0A 0 7,-0.5 7,-1.8 -2,-0.4 2,-0.4 -0.854 14.6-178.2-113.3 141.3 -2.5 2.8 2.7 44 44 A I E +CD 68 49A 37 24,-2.0 24,-3.0 -2,-0.4 5,-0.1 -0.992 15.9 159.6-128.7 137.6 -1.3 2.6 6.3 45 45 A F S S- 0 0 55 3,-0.7 -1,-0.1 -2,-0.4 21,-0.1 0.606 80.8 -21.7-115.7 -54.6 2.1 1.6 7.6 46 46 A A S S- 0 0 87 2,-0.4 3,-0.1 22,-0.0 -2,-0.0 0.615 116.8 -34.3-121.5 -76.0 2.3 3.1 11.1 47 47 A G S S+ 0 0 70 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.689 110.0 64.5-125.0 -44.1 -0.0 6.0 12.1 48 48 A K S S- 0 0 164 1,-0.0 -3,-0.7 0, 0.0 2,-0.5 -0.643 79.8-113.9 -91.9 151.4 -0.6 8.3 9.2 49 49 A Q B -D 44 0A 102 -2,-0.3 -5,-0.2 -5,-0.1 2,-0.1 -0.727 41.5-116.4 -83.6 121.9 -2.4 7.6 6.0 50 50 A L - 0 0 7 -7,-1.8 -7,-0.5 -2,-0.5 2,-0.2 -0.330 19.9-140.1 -78.2 132.2 -0.0 7.8 3.1 51 51 A E > - 0 0 103 -2,-0.1 3,-0.5 1,-0.1 -28,-0.3 -0.555 18.0-121.0 -87.6 155.9 -0.2 10.2 0.3 52 52 A D T 3 S+ 0 0 70 1,-0.2 -28,-1.2 -29,-0.2 2,-1.1 0.892 99.8 63.0 -66.8 -48.2 0.5 9.5 -3.4 53 53 A G T 3 S+ 0 0 67 -31,-0.1 2,-0.3 -30,-0.1 -1,-0.2 -0.066 90.1 80.7 -75.0 38.8 3.4 11.9 -4.1 54 54 A R S < S- 0 0 113 -2,-1.1 -31,-2.0 -3,-0.5 -30,-0.3 -0.947 73.7-121.7-139.6 150.7 5.9 10.4 -1.7 55 55 A T B > -E 22 0B 33 -2,-0.3 4,-1.6 -33,-0.2 -33,-0.2 -0.564 22.8-114.9 -91.3 158.8 8.1 7.4 -2.0 56 56 A L H >>S+ 0 0 0 -35,-1.9 5,-2.1 -37,-0.3 4,-0.6 0.928 118.8 56.8 -48.9 -48.7 8.4 4.3 0.1 57 57 A S H >45S+ 0 0 62 -38,-2.2 3,-0.6 3,-0.2 -1,-0.2 0.874 101.7 53.9 -56.4 -39.6 11.9 5.6 1.0 58 58 A D H 345S+ 0 0 89 -39,-0.3 -1,-0.2 1,-0.2 -2,-0.2 0.956 111.4 44.2 -53.6 -57.4 10.6 8.8 2.4 59 59 A Y H 3<5S- 0 0 58 -4,-1.6 -1,-0.2 1,-0.1 -2,-0.2 0.504 117.5-120.3 -63.5 -16.2 8.2 7.0 4.7 60 60 A N T <<5 + 0 0 120 -4,-0.6 2,-0.6 -3,-0.6 -3,-0.2 0.935 47.5 171.3 69.2 51.6 11.1 4.8 5.5 61 61 A I < - 0 0 5 -5,-2.1 -1,-0.2 -42,-0.1 3,-0.1 -0.880 14.8-161.1 -91.7 122.9 9.5 1.5 4.4 62 62 A Q > - 0 0 137 -2,-0.6 3,-0.7 1,-0.2 2,-0.2 -0.020 32.9 -60.3 -89.5-167.6 12.1 -1.3 4.4 63 63 A K T 3 S+ 0 0 135 1,-0.2 -1,-0.2 -60,-0.1 -60,-0.2 -0.515 120.3 9.1 -75.7 138.2 12.4 -4.7 2.8 64 64 A E T 3 S+ 0 0 106 -62,-2.9 2,-0.3 -2,-0.2 -1,-0.2 0.906 90.2 158.1 55.3 51.9 9.6 -7.1 3.8 65 65 A S < - 0 0 12 -3,-0.7 -61,-2.9 -63,-0.4 2,-0.6 -0.713 39.5-123.4-103.0 149.9 7.6 -4.4 5.6 66 66 A T E -b 4 0A 57 -2,-0.3 2,-0.3 -63,-0.2 -61,-0.2 -0.910 25.5-175.7-100.6 118.3 3.9 -4.8 6.3 67 67 A L E -b 5 0A 0 -63,-2.8 -61,-3.8 -2,-0.6 2,-0.4 -0.785 21.1-132.3-102.2 148.2 1.5 -2.2 5.0 68 68 A H E -bC 6 44A 86 -24,-3.0 -24,-2.0 -2,-0.3 2,-0.7 -0.853 14.2-144.0 -99.4 130.1 -2.3 -2.3 5.8 69 69 A L E - C 0 43A 18 -63,-2.7 2,-0.5 -2,-0.4 -61,-0.2 -0.918 14.4-169.9-108.9 116.1 -4.6 -1.9 3.0 70 70 A V E - C 0 42A 57 -28,-2.6 -28,-3.5 -2,-0.7 2,-0.6 -0.908 16.6-140.0 -99.9 130.9 -7.8 -0.0 3.8 71 71 A L E - C 0 41A 83 -2,-0.5 2,-0.3 -30,-0.2 -30,-0.2 -0.819 21.8-136.6 -90.1 111.8 -10.6 0.0 1.2 72 72 A R + 0 0 112 -32,-3.3 -31,-0.1 -2,-0.6 -1,-0.0 -0.532 36.3 160.1 -70.4 128.2 -12.2 3.5 1.1 73 73 A L S S- 0 0 142 -2,-0.3 -1,-0.2 3,-0.1 3,-0.0 0.702 83.2 -47.1-101.1 -70.1 -15.9 3.8 0.9 74 74 A R S S- 0 0 215 -34,-0.0 2,-0.1 0, 0.0 -2,-0.1 0.636 104.5 -56.2-116.5 -59.0 -16.4 7.3 2.2 75 75 A G 0 0 55 -3,-0.0 -3,-0.1 0, 0.0 0, 0.0 -0.536 360.0 360.0 158.5 119.4 -14.3 7.5 5.2 76 76 A G 0 0 137 -2,-0.1 -3,-0.1 -3,-0.0 0, 0.0 -0.940 360.0 360.0-176.4 360.0 -13.9 5.7 8.5