==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/TRANSFERASE 19-FEB-03 1NZP . COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.F.DEROSE,T.W.KIRBY,G.A.MUELLER,K.BEBENEK,M.GARCIA-DIAZ, . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7409.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 58.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 44.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 242 A A 0 0 147 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 88.0 4.7 6.0 -49.7 2 243 A Q + 0 0 186 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.910 360.0 27.3 -89.3 -52.0 4.5 3.0 -52.1 3 244 A P + 0 0 106 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.674 64.0 126.7 -78.9-119.9 1.4 1.1 -50.9 4 245 A S - 0 0 110 1,-0.2 2,-0.4 2,-0.0 0, 0.0 0.971 37.8-174.0 58.6 89.1 -1.5 2.9 -49.1 5 246 A S - 0 0 78 2,-0.1 2,-1.9 3,-0.0 -1,-0.2 -0.945 30.0-133.7-118.6 136.0 -4.6 1.9 -51.0 6 247 A Q S S+ 0 0 207 -2,-0.4 2,-0.2 2,-0.0 -2,-0.0 -0.384 74.7 95.4 -83.3 60.3 -8.1 3.3 -50.4 7 248 A K S S- 0 0 171 -2,-1.9 2,-1.0 1,-0.0 -2,-0.1 -0.508 89.5 -37.4-129.6-162.3 -9.8 -0.1 -50.5 8 249 A A S S+ 0 0 107 -2,-0.2 2,-0.3 0, 0.0 -2,-0.0 -0.528 92.1 103.7 -69.2 101.6 -10.9 -2.8 -48.1 9 250 A T S S- 0 0 86 -2,-1.0 40,-0.0 1,-0.1 0, 0.0 -0.976 72.4 -65.5-167.7 170.9 -8.2 -2.9 -45.4 10 251 A N - 0 0 60 -2,-0.3 40,-0.1 1,-0.1 39,-0.1 0.044 29.3-155.0 -58.7 174.3 -7.3 -1.8 -41.8 11 252 A H S S+ 0 0 151 38,-0.3 -1,-0.1 39,-0.0 39,-0.1 0.531 81.5 33.3-127.6 -21.8 -7.1 1.8 -40.8 12 253 A N + 0 0 49 1,-0.1 38,-0.0 2,-0.1 -2,-0.0 0.820 50.9 149.1 -99.7 -81.9 -4.7 1.8 -37.8 13 254 A L > + 0 0 89 1,-0.1 4,-0.6 4,-0.0 -1,-0.1 0.442 65.8 83.7 58.6 -2.3 -2.0 -0.8 -37.9 14 255 A H H > S+ 0 0 101 2,-0.1 4,-1.8 3,-0.1 5,-0.2 0.904 89.5 39.2 -91.8 -56.0 0.1 1.7 -36.0 15 256 A I H > S+ 0 0 4 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.801 118.7 51.8 -65.1 -29.8 -1.1 1.1 -32.4 16 257 A T H > S+ 0 0 28 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.948 109.3 46.3 -72.1 -51.0 -1.1 -2.6 -33.1 17 258 A E H X S+ 0 0 113 -4,-0.6 4,-1.0 1,-0.2 -2,-0.2 0.832 118.0 45.5 -60.8 -32.8 2.4 -2.9 -34.5 18 259 A K H X S+ 0 0 69 -4,-1.8 4,-2.1 2,-0.2 5,-0.4 0.893 102.4 61.6 -77.8 -43.0 3.6 -0.8 -31.6 19 260 A L H X S+ 0 0 5 -4,-2.3 4,-1.0 1,-0.3 -1,-0.2 0.771 107.9 49.4 -54.5 -22.2 1.7 -2.7 -28.9 20 261 A E H X S+ 0 0 92 -4,-1.0 4,-2.2 2,-0.2 -1,-0.3 0.849 103.2 57.7 -83.4 -39.4 3.9 -5.5 -30.2 21 262 A V H X S+ 0 0 58 -4,-1.0 4,-1.1 -3,-0.2 -2,-0.2 0.925 112.6 40.5 -57.0 -47.7 7.2 -3.6 -30.0 22 263 A L H X S+ 0 0 52 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.863 110.3 59.4 -69.4 -36.9 6.7 -3.0 -26.3 23 264 A A H X S+ 0 0 12 -4,-1.0 4,-2.0 -5,-0.4 -2,-0.2 0.869 104.6 50.5 -59.6 -37.2 5.3 -6.5 -25.7 24 265 A K H X S+ 0 0 131 -4,-2.2 4,-1.6 1,-0.2 -1,-0.2 0.831 104.2 59.4 -69.7 -32.9 8.7 -7.8 -27.0 25 266 A A H X S+ 0 0 42 -4,-1.1 4,-1.8 2,-0.2 -2,-0.2 0.919 108.5 43.1 -61.7 -45.4 10.5 -5.5 -24.6 26 267 A Y H X>S+ 0 0 52 -4,-1.8 5,-2.4 1,-0.2 4,-1.3 0.921 108.8 57.8 -67.0 -45.0 8.8 -7.1 -21.6 27 268 A S H <5S+ 0 0 78 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.837 109.6 46.6 -54.3 -34.4 9.3 -10.6 -23.0 28 269 A V H <5S+ 0 0 108 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.883 109.0 52.6 -75.6 -40.4 13.0 -9.9 -23.1 29 270 A Q H <5S- 0 0 164 -4,-1.8 -2,-0.2 -5,-0.1 -1,-0.2 0.643 124.2-104.8 -69.9 -14.0 13.1 -8.4 -19.6 30 271 A G T <5 + 0 0 38 -4,-1.3 2,-0.9 1,-0.2 -3,-0.2 0.838 66.8 152.7 92.1 39.1 11.4 -11.6 -18.4 31 272 A D >< + 0 0 55 -5,-2.4 4,-2.3 1,-0.2 5,-0.2 -0.749 7.8 164.0-104.4 85.5 7.9 -10.3 -17.8 32 273 A K H > S+ 0 0 159 -2,-0.9 4,-0.7 2,-0.2 -1,-0.2 0.884 80.4 43.5 -66.8 -39.8 5.6 -13.3 -18.3 33 274 A W H > S+ 0 0 208 -3,-0.2 4,-1.9 2,-0.2 3,-0.3 0.958 117.2 43.7 -70.1 -53.9 2.7 -11.5 -16.6 34 275 A R H > S+ 0 0 114 1,-0.2 4,-2.3 2,-0.2 3,-0.2 0.945 115.3 47.7 -57.2 -52.8 3.1 -8.1 -18.3 35 276 A A H X S+ 0 0 19 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.732 108.4 59.5 -62.1 -22.0 3.7 -9.6 -21.8 36 277 A L H X S+ 0 0 88 -4,-0.7 4,-1.5 -3,-0.3 -1,-0.2 0.929 109.9 38.3 -72.8 -47.0 0.7 -11.8 -21.2 37 278 A G H X S+ 0 0 21 -4,-1.9 4,-1.4 -3,-0.2 -2,-0.2 0.833 118.8 49.9 -72.9 -32.8 -1.7 -8.9 -20.7 38 279 A Y H X S+ 0 0 3 -4,-2.3 4,-1.8 -5,-0.2 3,-0.4 0.970 113.1 43.0 -69.4 -56.0 -0.1 -6.9 -23.5 39 280 A A H X S+ 0 0 50 -4,-2.0 4,-1.8 1,-0.2 -2,-0.2 0.855 110.3 59.4 -58.8 -35.2 -0.0 -9.6 -26.1 40 281 A K H X S+ 0 0 102 -4,-1.5 4,-1.2 1,-0.2 -1,-0.2 0.902 104.3 49.7 -60.3 -41.6 -3.6 -10.5 -25.1 41 282 A A H X S+ 0 0 1 -4,-1.4 4,-1.6 -3,-0.4 3,-0.3 0.885 107.9 53.6 -64.6 -38.8 -4.7 -7.0 -26.0 42 283 A I H X S+ 0 0 7 -4,-1.8 4,-1.2 1,-0.2 -1,-0.2 0.844 102.7 58.4 -64.4 -33.4 -3.0 -7.2 -29.3 43 284 A N H < S+ 0 0 107 -4,-1.8 4,-0.3 1,-0.2 -1,-0.2 0.843 104.4 51.5 -64.6 -33.6 -4.9 -10.4 -30.0 44 285 A A H >< S+ 0 0 6 -4,-1.2 3,-1.2 -3,-0.3 4,-0.4 0.896 110.1 47.1 -69.9 -41.2 -8.1 -8.4 -29.6 45 286 A L H 3< S+ 0 0 15 -4,-1.6 3,-0.3 1,-0.3 -1,-0.2 0.698 95.6 76.6 -72.9 -19.2 -7.0 -5.8 -32.0 46 287 A K T 3< S+ 0 0 126 -4,-1.2 -1,-0.3 1,-0.3 -2,-0.2 0.683 106.4 33.4 -64.4 -17.1 -6.0 -8.6 -34.4 47 288 A S S < S+ 0 0 111 -3,-1.2 2,-0.4 -4,-0.3 -1,-0.3 0.445 93.0 112.9-114.6 -8.1 -9.7 -9.0 -35.1 48 289 A F + 0 0 58 -4,-0.4 -3,-0.0 -3,-0.3 13,-0.0 -0.550 35.6 174.2 -71.9 122.3 -10.7 -5.3 -34.8 49 290 A H + 0 0 136 -2,-0.4 -38,-0.3 -39,-0.1 -1,-0.2 0.886 58.9 66.8 -93.1 -52.1 -11.8 -3.9 -38.1 50 291 A K S S- 0 0 155 1,-0.1 -40,-0.0 -40,-0.1 -38,-0.0 -0.394 88.4-110.6 -72.1 148.6 -12.9 -0.4 -37.2 51 292 A P - 0 0 52 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.109 33.6-100.8 -66.2-173.9 -10.3 2.2 -35.9 52 293 A V + 0 0 31 1,-0.1 3,-0.1 20,-0.0 6,-0.0 -0.835 40.7 157.8-115.1 152.9 -10.0 3.5 -32.4 53 294 A T + 0 0 106 1,-0.5 2,-0.3 -2,-0.3 -1,-0.1 0.517 66.1 20.2-138.8 -40.3 -11.2 6.8 -30.9 54 295 A S > - 0 0 38 1,-0.1 4,-1.1 0, 0.0 -1,-0.5 -0.889 69.7-115.4-135.3 165.6 -11.6 6.4 -27.1 55 296 A Y H > S+ 0 0 128 -2,-0.3 4,-2.1 1,-0.2 5,-0.2 0.865 115.8 52.8 -67.3 -38.1 -10.5 4.2 -24.3 56 297 A Q H > S+ 0 0 122 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.895 106.4 52.7 -65.1 -40.8 -14.0 2.9 -23.6 57 298 A E H 4 S+ 0 0 92 1,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.793 111.9 47.3 -65.1 -28.1 -14.5 2.0 -27.3 58 299 A A H >< S+ 0 0 1 -4,-1.1 3,-1.4 1,-0.2 -2,-0.2 0.839 107.0 54.7 -81.2 -36.1 -11.3 -0.0 -27.1 59 300 A C H 3< S+ 0 0 50 -4,-2.1 5,-0.2 1,-0.3 -2,-0.2 0.705 91.7 75.5 -70.1 -19.3 -12.2 -1.7 -23.8 60 301 A S T 3< S+ 0 0 95 -4,-1.1 -1,-0.3 -5,-0.2 -2,-0.2 0.669 78.6 91.0 -66.3 -15.7 -15.4 -2.9 -25.5 61 302 A I S X S- 0 0 24 -3,-1.4 3,-1.2 4,-0.1 -17,-0.1 -0.712 88.2-114.1 -86.2 126.5 -13.3 -5.4 -27.4 62 303 A P T 3 S+ 0 0 112 0, 0.0 3,-0.1 0, 0.0 -2,-0.1 -0.286 98.8 41.4 -59.0 138.0 -13.0 -8.8 -25.6 63 304 A G T 3 S+ 0 0 40 1,-0.5 2,-0.2 -4,-0.1 -19,-0.2 0.302 103.7 78.5 106.3 -7.6 -9.5 -9.7 -24.4 64 305 A I < - 0 0 30 -3,-1.2 -1,-0.5 -5,-0.2 2,-0.2 -0.479 56.7-164.9-118.5-170.5 -8.7 -6.2 -23.1 65 306 A G > - 0 0 24 -2,-0.2 4,-1.3 -3,-0.1 -4,-0.1 -0.782 40.4 -75.6-155.2-161.1 -9.6 -4.1 -20.0 66 307 A K H > S+ 0 0 169 -2,-0.2 4,-2.1 2,-0.2 5,-0.3 0.941 123.7 47.8 -77.4 -51.8 -9.6 -0.7 -18.4 67 308 A R H > S+ 0 0 164 1,-0.2 4,-1.0 2,-0.2 -1,-0.1 0.880 117.0 44.8 -56.9 -40.1 -5.9 -0.4 -17.7 68 309 A M H > S+ 0 0 26 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.866 106.9 60.7 -72.2 -37.3 -5.2 -1.5 -21.2 69 310 A A H X S+ 0 0 0 -4,-1.3 4,-1.6 1,-0.2 3,-0.4 0.958 109.1 40.3 -53.9 -57.1 -7.8 0.8 -22.7 70 311 A E H X S+ 0 0 101 -4,-2.1 4,-2.0 1,-0.2 -1,-0.2 0.793 109.9 63.4 -63.5 -27.1 -6.2 4.0 -21.3 71 312 A K H X S+ 0 0 63 -4,-1.0 4,-1.5 -5,-0.3 -1,-0.2 0.910 101.8 48.9 -63.1 -42.8 -2.9 2.5 -22.3 72 313 A I H X S+ 0 0 7 -4,-2.2 4,-1.0 -3,-0.4 3,-0.2 0.919 110.3 50.2 -62.8 -45.4 -3.9 2.5 -25.9 73 314 A I H X S+ 0 0 37 -4,-1.6 4,-0.8 1,-0.2 3,-0.3 0.852 105.5 58.2 -62.0 -35.2 -5.0 6.1 -25.7 74 315 A E H ><>S+ 0 0 98 -4,-2.0 5,-2.0 1,-0.2 3,-0.7 0.893 102.9 52.3 -62.0 -40.4 -1.7 7.0 -24.1 75 316 A I H ><5S+ 0 0 31 -4,-1.5 3,-0.7 1,-0.3 -1,-0.2 0.769 107.9 52.7 -66.8 -25.1 0.2 5.6 -27.2 76 317 A L H 3<5S+ 0 0 84 -4,-1.0 -1,-0.3 -3,-0.3 -2,-0.2 0.644 101.8 59.9 -83.6 -16.4 -2.1 7.9 -29.3 77 318 A E T <<5S- 0 0 117 -4,-0.8 3,-0.5 -3,-0.7 -1,-0.2 0.177 117.2-112.2 -95.5 15.7 -1.1 10.9 -27.2 78 319 A S T < 5 - 0 0 38 -3,-0.7 2,-0.4 1,-0.3 3,-0.3 0.630 67.6 -68.1 62.9 13.7 2.6 10.4 -28.1 79 320 A G S