==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 20-FEB-03 1O06 . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS27 . SOURCE 2 SYNTHETIC: YES; . AUTHOR R.D.FISHER,B.WANG,S.L.ALAM,D.S.HIGGINSON,R.RICH,D.MYSZKA, . 20 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2199.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 65.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 241 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.5 5.3 48.1 3.5 2 2 A E - 0 0 138 4,-0.0 0, 0.0 2,-0.0 0, 0.0 -0.562 360.0-125.6 -86.5 157.6 5.3 44.3 3.5 3 3 A D > - 0 0 91 -2,-0.2 4,-2.0 1,-0.1 3,-0.4 -0.914 10.6-158.2-109.2 112.3 3.2 42.3 6.0 4 4 A P H > S+ 0 0 93 0, 0.0 4,-2.4 0, 0.0 5,-0.1 0.812 93.2 55.5 -63.5 -28.0 5.2 39.9 8.1 5 5 A D H > S+ 0 0 127 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.848 106.7 50.4 -72.3 -35.4 2.1 37.8 8.9 6 6 A L H > S+ 0 0 105 -3,-0.4 4,-2.0 2,-0.2 5,-0.2 0.952 114.1 44.2 -62.3 -49.8 1.4 37.3 5.1 7 7 A K H X S+ 0 0 85 -4,-2.0 4,-2.8 1,-0.2 5,-0.2 0.907 113.0 51.5 -63.8 -40.7 5.0 36.2 4.5 8 8 A A H X S+ 0 0 47 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.897 109.4 50.1 -65.2 -39.0 5.0 33.9 7.6 9 9 A A H X S+ 0 0 56 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.902 113.4 45.6 -66.6 -39.8 1.8 32.2 6.5 10 10 A I H X S+ 0 0 97 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.912 111.4 51.7 -69.9 -42.9 3.1 31.6 3.0 11 11 A Q H X S+ 0 0 103 -4,-2.8 4,-2.1 2,-0.2 -2,-0.2 0.915 110.8 49.3 -57.6 -43.4 6.5 30.4 4.4 12 12 A E H X S+ 0 0 84 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.914 107.3 54.8 -61.5 -43.9 4.5 28.0 6.6 13 13 A S H X S+ 0 0 76 -4,-2.2 4,-2.0 1,-0.2 -1,-0.2 0.868 107.9 50.4 -54.1 -42.0 2.5 26.9 3.6 14 14 A L H X S+ 0 0 122 -4,-2.0 4,-1.6 2,-0.2 -2,-0.2 0.904 110.0 48.1 -65.9 -43.7 5.8 26.0 1.8 15 15 A R H X S+ 0 0 136 -4,-2.1 4,-0.6 1,-0.2 -2,-0.2 0.908 112.2 51.2 -63.3 -41.9 7.2 24.0 4.7 16 16 A E H >< S+ 0 0 91 -4,-2.6 3,-1.1 1,-0.2 4,-0.4 0.890 107.0 51.9 -62.2 -40.1 3.8 22.2 4.8 17 17 A A H >< S+ 0 0 68 -4,-2.0 3,-1.1 1,-0.3 -1,-0.2 0.843 103.2 60.0 -66.7 -32.7 3.9 21.4 1.1 18 18 A E H 3< S+ 0 0 158 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.645 92.4 68.7 -70.1 -17.4 7.4 19.9 1.6 19 19 A E T << 0 0 132 -3,-1.1 -1,-0.2 -4,-0.6 -2,-0.2 0.678 360.0 360.0 -70.4 -23.7 5.9 17.4 4.1 20 20 A A < 0 0 149 -3,-1.1 -3,-0.0 -4,-0.4 0, 0.0 -0.057 360.0 360.0 -66.2 360.0 4.0 15.5 1.3