==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 12-DEC-06 2O8K . COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; . SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; . AUTHOR M.DOUCLEFF,J.G.PELTON,P.S.LEE,D.E.WEMMER . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4758.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 39.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 14 A H 0 0 158 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 95.5 -1.9 0.6 -13.7 2 15 A M + 0 0 164 37,-0.0 2,-0.1 38,-0.0 38,-0.0 0.891 360.0 44.5 -65.2 -39.9 -2.0 4.4 -13.2 3 16 A L S S- 0 0 22 1,-0.2 36,-0.1 36,-0.1 37,-0.0 -0.330 95.6 -94.6 -96.7-179.0 1.7 4.4 -12.3 4 17 A T - 0 0 64 -2,-0.1 -1,-0.2 1,-0.1 4,-0.1 0.240 67.0 -60.1 -76.3-155.3 4.7 2.7 -13.9 5 18 A Q S S- 0 0 159 1,-0.2 -1,-0.1 2,-0.1 -2,-0.1 0.798 128.2 -18.1 -62.0 -28.2 6.2 -0.7 -12.9 6 19 A G S > S+ 0 0 0 3,-0.1 4,-1.6 2,-0.0 -1,-0.2 0.027 75.8 151.5-174.1 48.0 6.9 0.8 -9.5 7 20 A E T 4 S+ 0 0 65 1,-0.2 -2,-0.1 2,-0.2 32,-0.0 0.699 95.6 26.3 -60.4 -18.0 6.8 4.6 -9.6 8 21 A L T >> S+ 0 0 5 -4,-0.1 4,-2.3 3,-0.1 3,-1.1 0.601 113.5 67.5-116.2 -23.2 5.7 4.3 -6.0 9 22 A M H 3> S+ 0 0 54 1,-0.3 4,-0.9 2,-0.2 5,-0.4 0.976 103.8 41.8 -63.0 -59.2 7.2 1.0 -5.0 10 23 A K H 3< S+ 0 0 88 -4,-1.6 -1,-0.3 1,-0.2 -3,-0.1 0.133 117.3 56.4 -76.7 23.6 10.9 2.0 -5.2 11 24 A L H <>>S+ 0 0 27 -3,-1.1 4,-3.5 3,-0.1 5,-0.6 0.692 92.8 58.4-119.0 -48.2 9.8 5.2 -3.5 12 25 A I H X5S+ 0 0 4 -4,-2.3 4,-1.8 1,-0.2 5,-0.1 0.946 124.0 24.2 -52.2 -54.1 8.1 4.2 -0.3 13 26 A K H X5S+ 0 0 67 -4,-0.9 4,-2.0 2,-0.2 -1,-0.2 0.771 122.3 57.5 -83.4 -26.7 11.1 2.4 1.1 14 27 A E H 45S+ 0 0 98 -5,-0.4 -2,-0.2 2,-0.2 -1,-0.2 0.859 118.1 31.6 -70.7 -37.6 13.6 4.3 -1.0 15 28 A I H ><5S+ 0 0 46 -4,-3.5 3,-0.6 2,-0.2 4,-0.3 0.827 120.1 51.5 -89.0 -36.7 12.4 7.7 0.4 16 29 A V H >< - 0 0 76 3,-0.4 3,-1.1 1,-0.2 -1,-0.1 -0.838 50.7-179.0-105.3 100.9 14.2 9.6 9.3 21 34 A K T 3 S+ 0 0 130 -2,-0.8 -1,-0.2 1,-0.3 -4,-0.0 0.869 88.9 52.6 -62.5 -37.4 15.1 6.0 10.1 22 35 A R T 3 S+ 0 0 174 1,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 0.552 115.3 45.8 -75.7 -6.9 14.3 6.7 13.8 23 36 A K S < S- 0 0 140 -3,-1.1 -3,-0.4 -7,-0.1 -1,-0.3 -0.701 80.4-168.7-138.0 82.9 10.9 8.0 12.6 24 37 A P - 0 0 38 0, 0.0 -3,-0.1 0, 0.0 2,-0.1 -0.334 18.6-122.3 -72.2 153.4 9.2 5.7 10.0 25 38 A Y - 0 0 53 -13,-0.1 2,-0.4 -2,-0.0 3,-0.0 -0.266 19.3-122.1 -87.3 178.4 6.2 6.8 8.0 26 39 A S >> - 0 0 45 1,-0.1 4,-1.9 -2,-0.1 3,-1.5 -0.990 27.2-108.9-128.9 133.6 2.8 5.1 7.8 27 40 A D H 3> S+ 0 0 40 -2,-0.4 4,-2.1 1,-0.3 5,-0.1 0.747 124.8 48.0 -22.5 -47.1 1.1 3.7 4.7 28 41 A Q H 3> S+ 0 0 79 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.947 115.4 41.9 -65.3 -49.8 -1.3 6.7 5.2 29 42 A E H <> S+ 0 0 89 -3,-1.5 4,-2.5 2,-0.2 5,-0.3 0.947 115.4 49.2 -63.7 -48.5 1.4 9.2 5.7 30 43 A I H X S+ 0 0 1 -4,-1.9 4,-2.4 1,-0.3 -1,-0.2 0.900 111.8 50.1 -58.0 -40.7 3.6 7.9 2.9 31 44 A A H X S+ 0 0 5 -4,-2.1 4,-1.3 -5,-0.5 -1,-0.3 0.851 109.2 53.3 -65.8 -34.2 0.6 7.9 0.6 32 45 A N H < S+ 0 0 57 -4,-1.8 4,-0.4 2,-0.2 3,-0.2 0.952 113.3 39.7 -66.2 -50.6 -0.1 11.5 1.6 33 46 A I H >X S+ 0 0 42 -4,-2.5 3,-1.5 1,-0.2 4,-0.7 0.880 112.4 57.8 -65.8 -38.7 3.3 12.8 0.8 34 47 A L H >X>S+ 0 0 4 -4,-2.4 5,-2.2 -5,-0.3 4,-1.4 0.805 101.2 56.5 -62.0 -30.2 3.5 10.6 -2.3 35 48 A K H 3<5S+ 0 0 130 -4,-1.3 -1,-0.3 4,-0.3 -2,-0.2 0.628 100.5 59.9 -76.7 -12.9 0.3 12.3 -3.5 36 49 A E H <45S+ 0 0 121 -3,-1.5 -1,-0.2 -4,-0.4 -2,-0.2 0.666 109.2 41.8 -86.9 -19.1 2.1 15.6 -3.2 37 50 A K H <<5S- 0 0 140 -4,-0.7 -2,-0.2 -3,-0.6 -3,-0.1 0.923 126.9 -76.5 -89.8 -68.8 4.8 14.6 -5.7 38 51 A G T <5S+ 0 0 43 -4,-1.4 -3,-0.2 3,-0.0 -4,-0.1 0.260 104.6 94.2 172.4 28.6 3.0 12.8 -8.6 39 52 A F < - 0 0 32 -5,-2.2 -4,-0.3 -6,-0.1 3,-0.1 0.564 51.3-173.2-108.2 -13.3 2.2 9.3 -7.4 40 53 A K + 0 0 120 -6,-0.7 2,-0.4 1,-0.1 -5,-0.2 0.731 27.8 165.0 19.9 46.3 -1.4 10.1 -6.3 41 54 A V - 0 0 16 -10,-0.2 -1,-0.1 1,-0.1 -6,-0.1 -0.718 36.4-120.0 -93.0 139.9 -1.4 6.6 -5.0 42 55 A A >> - 0 0 44 -2,-0.4 4,-2.5 1,-0.1 3,-1.0 -0.391 20.5-117.7 -75.1 152.9 -4.0 5.4 -2.5 43 56 A R H 3> S+ 0 0 108 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.748 113.3 67.4 -60.9 -22.4 -3.0 4.1 0.9 44 57 A R H 3> S+ 0 0 181 2,-0.2 4,-1.1 1,-0.2 -1,-0.3 0.886 108.6 34.0 -65.9 -39.8 -4.6 0.8 -0.2 45 58 A T H <> S+ 0 0 53 -3,-1.0 4,-2.6 2,-0.2 -2,-0.2 0.875 116.5 53.8 -82.0 -42.2 -1.9 0.3 -2.8 46 59 A V H X S+ 0 0 0 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.850 109.7 50.1 -61.5 -33.9 0.9 1.8 -0.8 47 60 A A H X S+ 0 0 19 -4,-2.0 4,-0.8 -5,-0.2 -1,-0.2 0.888 111.4 47.3 -71.1 -40.4 0.1 -0.4 2.1 48 61 A K H X S+ 0 0 146 -4,-1.1 4,-1.2 -5,-0.2 -2,-0.2 0.856 113.2 50.2 -68.1 -37.2 0.1 -3.5 -0.1 49 62 A Y H >X S+ 0 0 45 -4,-2.6 4,-2.9 2,-0.2 3,-1.4 0.983 101.2 57.1 -67.0 -59.4 3.4 -2.5 -1.7 50 63 A R H 3X>S+ 0 0 41 -4,-2.1 5,-2.4 1,-0.3 4,-1.1 0.796 113.1 46.3 -43.2 -28.5 5.4 -1.8 1.4 51 64 A E H 3<5S+ 0 0 135 -4,-0.8 -1,-0.3 3,-0.2 -2,-0.2 0.789 111.5 50.1 -84.7 -30.6 4.5 -5.4 2.2 52 65 A M H <<5S+ 0 0 116 -3,-1.4 -2,-0.2 -4,-1.2 -3,-0.2 0.890 109.2 50.7 -74.0 -41.8 5.3 -6.7 -1.2 53 66 A L H <5S- 0 0 60 -4,-2.9 -2,-0.2 2,-0.1 -3,-0.1 0.970 129.8 -84.0 -61.2 -54.8 8.8 -5.1 -1.3 54 67 A G T <5S+ 0 0 41 -4,-1.1 -3,-0.2 -5,-0.3 -2,-0.1 0.413 88.9 114.5 151.9 34.4 9.9 -6.4 2.0 55 68 A I < - 0 0 9 -5,-2.4 -1,-0.2 -6,-0.3 -2,-0.1 -0.989 44.2-160.9-129.6 130.2 8.6 -4.2 4.8 56 69 A P S S- 0 0 43 0, 0.0 -1,-0.1 0, 0.0 -5,-0.1 0.918 84.9 -43.3 -72.1 -44.7 6.0 -5.1 7.5 57 70 A S - 0 0 39 -7,-0.1 -30,-0.1 -31,-0.0 -6,-0.1 0.234 67.7-111.9-172.0 13.1 5.1 -1.5 8.4 58 71 A S S > S+ 0 0 17 1,-0.2 4,-0.7 -8,-0.1 -32,-0.1 0.398 107.6 88.1 61.3 -8.0 8.4 0.4 8.5 59 72 A R H > S+ 0 0 183 2,-0.2 4,-1.8 3,-0.1 -1,-0.2 0.819 82.4 50.3 -86.3 -35.6 7.7 0.6 12.2 60 73 A E H 4 S+ 0 0 113 1,-0.2 -1,-0.1 2,-0.2 -5,-0.0 0.882 106.3 55.5 -70.0 -39.2 9.3 -2.7 13.1 61 74 A R H 4 S+ 0 0 131 1,-0.2 -1,-0.2 0, 0.0 -2,-0.2 0.882 108.0 49.3 -61.8 -38.5 12.5 -1.8 11.3 62 75 A R H < 0 0 130 -4,-0.7 -1,-0.2 -40,-0.0 -2,-0.2 0.929 360.0 360.0 -66.7 -45.5 12.8 1.3 13.4 63 76 A I < 0 0 173 -4,-1.8 -41,-0.0 0, 0.0 0, 0.0 -0.509 360.0 360.0 -84.7 360.0 12.3 -0.5 16.7