==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 29-DEC-06 2OEI . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN-BINDING FAMILY B MEMBER . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.MEIYAPPAN,G.BIRRANE,J.A.A.LADIAS . 46 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3226.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 30.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 23.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 252 A G 0 0 138 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 154.6 18.2 -13.4 7.4 2 253 A S + 0 0 87 35,-0.2 0, 0.0 2,-0.0 0, 0.0 0.173 360.0 156.9-114.7 142.5 18.1 -12.3 10.1 3 254 A D + 0 0 86 2,-0.1 0, 0.0 -2,-0.0 0, 0.0 0.205 55.1 95.8 -95.8 12.4 20.3 -9.2 10.3 4 255 A L S S- 0 0 20 33,-0.1 3,-0.1 4,-0.1 29,-0.1 -0.874 74.7-122.5-109.3 137.3 18.4 -7.8 13.3 5 256 A P > - 0 0 2 0, 0.0 3,-1.8 0, 0.0 31,-0.1 -0.335 50.4 -78.4 -64.1 157.1 19.3 -8.2 16.9 6 257 A A T 3 S+ 0 0 96 30,-0.3 3,-0.1 1,-0.2 29,-0.0 -0.248 119.2 36.9 -55.5 142.5 16.7 -9.8 19.1 7 258 A G T 3 S+ 0 0 29 1,-0.3 15,-2.2 -3,-0.1 2,-0.3 0.139 97.1 100.1 97.1 -14.0 14.0 -7.4 20.1 8 259 A W E < +A 21 0A 12 -3,-1.8 2,-0.3 13,-0.2 -1,-0.3 -0.783 43.2 176.7-104.7 144.8 13.8 -5.6 16.7 9 260 A M E -A 20 0A 109 11,-2.1 11,-2.7 -2,-0.3 2,-0.3 -0.988 30.1-115.9-136.4 154.7 11.4 -6.0 13.8 10 261 A R E -A 19 0A 109 -2,-0.3 2,-0.4 9,-0.2 9,-0.2 -0.635 28.2-156.6 -78.0 143.5 10.9 -4.4 10.5 11 262 A V E -A 18 0A 16 7,-2.5 7,-2.4 -2,-0.3 2,-0.3 -0.996 10.6-132.1-127.8 127.0 7.7 -2.5 10.0 12 263 A Q E +A 17 0A 147 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.604 31.5 162.9 -78.1 132.4 6.1 -1.8 6.6 13 264 A D E > -A 16 0A 42 3,-0.6 3,-1.4 -2,-0.3 -2,-0.0 -0.972 51.0-112.1-137.6 161.4 4.8 1.6 5.8 14 265 A T T 3 S+ 0 0 150 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.828 120.3 52.3 -56.8 -32.0 3.9 3.3 2.5 15 266 A S T 3 S- 0 0 79 1,-0.3 -1,-0.3 -3,-0.0 2,-0.2 0.502 126.3 -74.2 -87.4 -3.6 6.9 5.6 3.1 16 267 A G E < -A 13 0A 24 -3,-1.4 -3,-0.6 2,-0.0 2,-0.5 -0.768 59.4 -53.8 136.9 174.8 9.4 2.8 3.7 17 268 A T E -A 12 0A 50 -2,-0.2 2,-0.2 -5,-0.2 -5,-0.2 -0.754 51.1-173.9 -87.5 132.4 10.5 0.1 6.1 18 269 A Y E -A 11 0A 10 -7,-2.4 -7,-2.5 -2,-0.5 2,-0.4 -0.692 21.8-115.5-118.6 172.8 11.3 1.3 9.7 19 270 A Y E -AB 10 28A 22 9,-2.8 9,-2.0 -2,-0.2 2,-0.5 -0.962 22.5-166.1-118.5 131.3 12.7 -0.5 12.6 20 271 A W E -AB 9 27A 55 -11,-2.7 -11,-2.1 -2,-0.4 2,-0.9 -0.971 12.2-155.9-122.2 123.6 10.9 -1.1 15.9 21 272 A H E >>> -AB 8 26A 20 5,-2.9 4,-2.0 -2,-0.5 3,-0.8 -0.879 14.8-161.5 -96.5 102.7 12.5 -2.2 19.1 22 273 A I T 345S+ 0 0 81 -15,-2.2 -1,-0.2 -2,-0.9 -14,-0.1 0.867 80.4 55.6 -57.2 -44.6 9.6 -3.8 20.9 23 274 A P T 345S+ 0 0 93 0, 0.0 -1,-0.2 0, 0.0 -15,-0.1 0.790 123.2 24.2 -64.4 -30.7 10.9 -3.8 24.5 24 275 A T T <45S- 0 0 84 -3,-0.8 -2,-0.2 -17,-0.2 -17,-0.0 0.503 99.5-121.6-108.6 -10.0 11.6 -0.0 24.6 25 276 A G T <5 + 0 0 41 -4,-2.0 -3,-0.2 1,-0.2 2,-0.1 0.521 56.3 156.8 77.9 4.9 9.2 1.3 21.9 26 277 A T E < -B 21 0A 51 -5,-0.7 -5,-2.9 -6,-0.1 2,-0.4 -0.408 19.2-174.1 -65.9 136.9 12.1 2.8 20.0 27 278 A T E +B 20 0A 39 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.988 11.4 156.5-131.5 142.4 11.5 3.4 16.3 28 279 A Q E -B 19 0A 42 -9,-2.0 -9,-2.8 -2,-0.4 17,-0.1 -0.986 44.0-130.5-156.5 161.2 14.0 4.6 13.7 29 280 A W S S+ 0 0 49 -2,-0.3 -12,-0.1 -11,-0.2 -1,-0.1 0.680 84.5 83.0 -88.3 -22.1 14.7 4.5 10.0 30 281 A E S S- 0 0 92 -11,-0.1 -11,-0.1 1,-0.1 3,-0.1 -0.674 90.9-106.0 -87.1 138.0 18.3 3.3 10.2 31 282 A P - 0 0 82 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.374 63.3 -64.6 -56.9 137.9 18.9 -0.4 10.5 32 283 A P - 0 0 13 0, 0.0 2,-0.1 0, 0.0 3,-0.1 -0.372 31.1-171.8 -70.8 148.9 20.0 -1.3 14.1 33 284 A G + 0 0 59 -29,-0.1 -29,-0.0 1,-0.1 -3,-0.0 -0.949 56.4 82.9 94.9 22.6 22.2 -0.7 15.8 34 285 A R S S+ 0 0 120 -2,-0.1 2,-0.1 -26,-0.0 -1,-0.1 0.597 73.5 12.4-114.2 -86.7 21.9 -2.8 19.0 35 286 A A S S- 0 0 51 -3,-0.1 -2,-0.1 -29,-0.0 -31,-0.0 0.193 85.7 -57.2-128.0-115.3 22.9 -5.6 19.0 36 287 A S 0 0 108 -2,-0.1 -30,-0.3 -31,-0.1 -32,-0.1 0.352 360.0 360.0-103.5 130.8 24.1 -8.1 18.3 37 288 A P 0 0 91 0, 0.0 -35,-0.2 0, 0.0 -33,-0.1 0.478 360.0 360.0 -29.8 360.0 22.5 -8.7 14.9 38 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 39 1 B P 0 0 115 0, 0.0 -28,-0.0 0, 0.0 -17,-0.0 0.000 360.0 360.0 360.0 168.2 3.1 -1.3 15.7 40 2 B P - 0 0 39 0, 0.0 -15,-0.0 0, 0.0 -20,-0.0 -0.279 360.0 -85.7 -67.8 165.9 3.8 2.4 16.5 41 3 B P - 0 0 95 0, 0.0 -28,-0.1 0, 0.0 0, 0.0 -0.167 56.2 -76.5 -68.5 165.9 3.6 4.8 13.7 42 4 B P - 0 0 46 0, 0.0 -13,-0.0 0, 0.0 -25,-0.0 -0.348 54.6-117.7 -60.3 140.5 6.5 5.6 11.3 43 5 B P - 0 0 17 0, 0.0 2,-0.1 0, 0.0 -15,-0.1 -0.268 29.6 -99.0 -75.0 163.0 9.0 7.8 13.0 44 6 B P - 0 0 114 0, 0.0 -15,-0.2 0, 0.0 0, 0.0 -0.434 44.6 -96.2 -71.5 162.9 9.9 11.3 11.7 45 7 B L - 0 0 145 -2,-0.1 -17,-0.0 1,-0.1 0, 0.0 -0.593 42.5-114.7 -78.4 139.0 13.0 11.8 9.6 46 8 B P 0 0 70 0, 0.0 -1,-0.1 0, 0.0 -18,-0.0 -0.330 360.0 360.0 -71.3 162.6 16.0 12.9 11.5 47 9 B P 0 0 186 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.774 360.0 360.0 -53.1 360.0 17.4 16.4 10.8