==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER COLLAGEN-BINDING TYPE II DOMAIN 10-OCT-91 1PDC . COMPND 2 MOLECULE: SEMINAL FLUID PROTEIN PDC-109; . SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; . AUTHOR M.LLINAS,K.L.CONSTANTINE,L.PATTHY . 45 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3279.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 40.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 17.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -4 A D 0 0 117 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 156.1 3.0 0.9 -2.1 2 -3 A Y + 0 0 181 4,-0.1 4,-0.1 31,-0.0 30,-0.0 0.286 360.0 40.9-138.4 3.8 1.0 3.0 -4.6 3 -2 A A S S+ 0 0 83 2,-0.1 29,-0.1 30,-0.0 30,-0.1 0.172 124.0 30.3-137.6 14.1 3.4 5.9 -5.3 4 -1 A K S S- 0 0 113 28,-0.2 2,-0.2 27,-0.1 39,-0.1 0.522 128.3 -19.0-137.9 -49.7 6.7 4.0 -5.6 5 1 A a + 0 0 34 27,-0.1 27,-0.2 37,-0.1 -2,-0.1 -0.737 52.0 170.1-169.9 115.9 6.2 0.4 -6.9 6 2 A V - 0 0 45 25,-1.5 3,-0.1 26,-0.3 26,-0.1 0.881 35.9-139.8 -93.9 -79.3 3.0 -1.7 -7.0 7 3 A F S S+ 0 0 47 24,-0.2 10,-0.1 1,-0.2 2,-0.1 0.486 73.9 63.6 72.9 140.5 3.5 -4.9 -9.0 8 4 A P S S+ 0 0 95 0, 0.0 9,-0.2 0, 0.0 2,-0.2 0.512 76.2 169.3 -73.0 148.4 2.6 -6.9 -10.8 9 5 A F B -A 16 0A 2 7,-2.9 7,-2.6 -2,-0.1 2,-0.5 -0.711 36.4-121.1-120.6 173.2 2.4 -4.2 -13.5 10 6 A I B > -b 35 0B 58 24,-2.3 26,-1.8 5,-0.3 3,-1.3 -0.715 19.6-155.4-119.2 87.0 2.0 -4.1 -17.3 11 7 A Y G > S- 0 0 29 -2,-0.5 3,-1.3 1,-0.3 24,-0.1 -0.381 80.9 -37.9 -61.3 106.4 4.9 -2.4 -19.1 12 8 A G G 3 S- 0 0 42 -2,-0.6 -1,-0.3 1,-0.3 23,-0.0 0.804 124.0 -47.4 45.4 29.1 3.3 -1.2 -22.4 13 9 A G G < S+ 0 0 52 -3,-1.3 -1,-0.3 0, 0.0 -2,-0.2 0.795 122.3 108.1 84.4 28.6 1.4 -4.5 -22.2 14 10 A K S < S- 0 0 122 -3,-1.3 -2,-0.1 2,-0.0 -4,-0.1 0.667 71.6-135.4-108.6 -24.4 4.5 -6.6 -21.4 15 11 A K + 0 0 147 1,-0.1 2,-0.3 2,-0.0 -5,-0.3 0.653 31.5 168.6 71.8 127.2 3.8 -7.5 -17.7 16 12 A Y B -A 9 0A 76 -7,-2.6 -7,-2.9 1,-0.1 -1,-0.1 -0.975 24.3-160.6-160.0 166.3 6.6 -7.3 -15.1 17 13 A E S S+ 0 0 105 -2,-0.3 14,-0.3 -9,-0.2 -1,-0.1 0.577 72.3 24.5-119.0 -83.6 7.0 -7.4 -11.3 18 14 A T S S- 0 0 104 1,-0.1 -1,-0.2 12,-0.1 -9,-0.1 0.036 108.6 -56.7 -72.9-170.7 10.3 -5.9 -9.9 19 15 A b - 0 0 47 11,-0.1 2,-0.3 9,-0.1 11,-0.2 0.000 57.1-156.2 -59.2 177.3 12.3 -3.3 -11.8 20 16 A T B -C 29 0C 17 9,-1.4 9,-1.2 1,-0.1 25,-0.1 -0.874 24.9-153.8-163.9 125.4 13.5 -4.1 -15.3 21 17 A K > - 0 0 97 -2,-0.3 3,-1.3 7,-0.3 7,-0.1 0.858 22.3-175.7 -67.1 -34.1 16.4 -2.9 -17.6 22 18 A I T 3 S- 0 0 66 1,-0.3 -1,-0.1 2,-0.1 6,-0.1 0.832 84.2 -40.0 38.9 40.6 14.4 -3.8 -20.7 23 19 A G T 3 S+ 0 0 75 0, 0.0 -1,-0.3 0, 0.0 5,-0.1 0.748 112.1 133.2 83.4 24.3 17.5 -2.7 -22.7 24 20 A S < - 0 0 46 -3,-1.3 2,-0.5 3,-0.2 -3,-0.1 0.426 67.0 -68.5 -80.4-136.2 18.2 0.3 -20.4 25 21 A M S S- 0 0 151 1,-0.0 3,-0.2 -4,-0.0 -1,-0.1 -0.867 82.5 -56.8-130.5 104.0 21.7 1.0 -19.0 26 23 A W S S+ 0 0 235 -2,-0.5 2,-0.2 1,-0.2 -1,-0.0 0.792 127.6 51.5 35.9 37.0 23.3 -1.3 -16.4 27 24 A M S S- 0 0 72 -6,-0.0 2,-0.3 2,-0.0 -3,-0.2 -0.583 73.5-142.7-160.0-136.2 20.2 -0.6 -14.3 28 25 A S - 0 0 13 -2,-0.2 17,-3.3 -3,-0.2 2,-0.3 -0.974 11.0-113.8 172.5-178.1 16.4 -0.7 -14.7 29 26 A W E -CD 20 44C 1 -9,-1.2 -9,-1.4 15,-0.3 2,-0.3 -0.904 14.9-133.9-138.9 167.6 13.1 1.0 -13.8 30 27 A a E - D 0 43C 0 13,-2.5 13,-2.0 -2,-0.3 2,-0.5 -0.878 20.2-119.3-122.9 155.9 9.9 0.3 -11.8 31 28 A S E - D 0 42C 0 -14,-0.3 -25,-1.5 -2,-0.3 11,-0.3 -0.823 17.3-169.3 -99.1 125.7 6.2 0.8 -12.5 32 29 A L S S+ 0 0 38 9,-1.1 -26,-0.3 -2,-0.5 -28,-0.2 0.991 74.0 41.5 -74.1 -66.4 4.2 3.2 -10.3 33 30 A S S S- 0 0 14 6,-0.2 -23,-0.2 7,-0.1 -27,-0.1 -0.419 91.9-112.3 -79.9 159.9 0.6 2.4 -11.5 34 31 A P S S+ 0 0 57 0, 0.0 -24,-2.3 0, 0.0 2,-0.3 0.988 103.1 43.9 -54.5 -69.2 -0.5 -1.2 -12.2 35 32 A N B -b 10 0B 79 -26,-0.2 -24,-0.1 1,-0.2 -2,-0.1 -0.590 68.4-171.2 -80.0 140.8 -1.0 -0.9 -15.9 36 33 A Y > + 0 0 4 -26,-1.8 3,-3.4 -2,-0.3 5,-0.3 0.888 28.9 149.2 -94.2 -72.6 1.8 0.9 -17.7 37 34 A D T 3 S- 0 0 108 -27,-1.2 -26,-0.1 1,-0.3 3,-0.1 0.591 96.5 -70.0 47.7 7.9 0.8 1.5 -21.4 38 35 A K T 3 S+ 0 0 136 1,-0.2 2,-3.2 3,-0.0 -1,-0.3 0.431 92.4 144.7 91.4 2.0 3.0 4.7 -20.9 39 36 A D S < S- 0 0 93 -3,-3.4 -6,-0.2 1,-0.2 -1,-0.2 -0.346 88.0 -84.5 -71.4 68.4 0.5 6.4 -18.6 40 37 A R S S+ 0 0 140 -2,-3.2 -1,-0.2 1,-0.2 -7,-0.1 0.789 87.2 149.7 33.0 35.0 3.4 7.9 -16.5 41 38 A A + 0 0 0 -5,-0.3 -9,-1.1 -9,-0.1 2,-0.3 0.035 47.9 43.5 -84.7 30.2 3.2 4.6 -14.8 42 39 A W E -D 31 0C 95 -11,-0.3 2,-0.3 -10,-0.2 -11,-0.2 -0.956 49.5-157.3-160.3-178.8 6.9 4.5 -13.9 43 40 A K E -D 30 0C 91 -13,-2.0 -13,-2.5 -2,-0.3 2,-0.1 -0.949 44.3 -94.4-157.0 153.6 10.2 5.8 -12.6 44 41 A Y E D 29 0C 93 -2,-0.3 -15,-0.3 -15,-0.3 -25,-0.0 -0.438 360.0 360.0 -75.4 158.8 13.7 4.7 -13.3 45 42 A b 0 0 59 -17,-3.3 -16,-0.2 -25,-0.1 -1,-0.1 0.519 360.0 360.0-107.2 360.0 15.1 2.3 -10.7