==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 17-JUL-03 1Q0W . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.A.SWANSON,R.S.KANG,S.D.STAMENOVA,L.HICKE,I.RADHAKRISHNAN . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6637.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 68.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 17.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 28.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 255 A Y 0 0 240 0, 0.0 2,-1.8 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 133.6 -23.4 3.5 -1.4 2 256 A P + 0 0 126 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.208 360.0 84.4 -78.2 48.0 -22.9 -0.3 -1.7 3 257 A E > + 0 0 108 -2,-1.8 4,-2.3 1,-0.1 3,-0.3 -0.279 38.3 150.4-145.1 52.1 -19.2 0.2 -2.4 4 258 A D H > S+ 0 0 78 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.813 76.5 58.0 -55.1 -32.0 -17.4 0.5 1.0 5 259 A E H > S+ 0 0 32 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.936 107.5 44.0 -65.2 -48.8 -14.3 -1.0 -0.7 6 260 A E H > S+ 0 0 104 -3,-0.3 4,-2.2 2,-0.2 5,-0.2 0.945 115.4 47.2 -62.7 -49.9 -14.0 1.8 -3.3 7 261 A E H X S+ 0 0 87 -4,-2.3 4,-2.8 1,-0.2 -1,-0.2 0.903 111.2 53.1 -58.7 -41.1 -14.7 4.6 -0.9 8 262 A L H X S+ 0 0 25 -4,-2.1 4,-2.2 -5,-0.3 -1,-0.2 0.907 106.6 52.8 -60.2 -43.6 -12.2 3.1 1.5 9 263 A I H X S+ 0 0 16 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.938 114.5 40.1 -58.8 -49.5 -9.6 3.0 -1.2 10 264 A R H X S+ 0 0 123 -4,-2.2 4,-2.8 2,-0.2 5,-0.2 0.863 109.0 61.8 -69.4 -34.2 -10.0 6.7 -2.1 11 265 A K H X S+ 0 0 97 -4,-2.8 4,-2.1 1,-0.2 -1,-0.2 0.936 108.9 42.3 -55.3 -45.9 -10.3 7.5 1.6 12 266 A A H X S+ 0 0 2 -4,-2.2 4,-2.7 1,-0.2 -1,-0.2 0.868 109.5 60.3 -67.1 -36.7 -6.8 6.2 2.1 13 267 A I H X S+ 0 0 30 -4,-1.7 4,-2.1 1,-0.2 59,-0.3 0.925 108.5 42.4 -56.4 -48.3 -5.8 8.0 -1.1 14 268 A E H X S+ 0 0 101 -4,-2.8 4,-2.1 2,-0.2 -1,-0.2 0.917 112.2 53.9 -65.9 -45.1 -6.7 11.4 0.3 15 269 A L H X S+ 0 0 99 -4,-2.1 4,-1.3 -5,-0.2 -2,-0.2 0.910 111.5 45.4 -56.3 -45.4 -5.2 10.6 3.7 16 270 A S H X S+ 0 0 0 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.908 109.2 55.3 -65.7 -43.4 -1.9 9.7 2.0 17 271 A L H < S+ 0 0 82 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.876 103.1 56.9 -57.5 -39.7 -1.9 12.8 -0.2 18 272 A K H >< S+ 0 0 150 -4,-2.1 3,-0.8 1,-0.2 -1,-0.2 0.920 110.5 43.0 -58.4 -46.3 -2.3 15.0 2.8 19 273 A E H >< S+ 0 0 105 -4,-1.3 2,-1.1 1,-0.3 3,-0.6 0.938 111.0 54.1 -65.8 -48.7 0.9 13.7 4.3 20 274 A S G >< S+ 0 0 22 -4,-2.6 3,-0.8 1,-0.2 -1,-0.3 -0.144 71.9 127.4 -80.2 42.0 2.8 13.7 1.0 21 275 A R G < + 0 0 198 -2,-1.1 2,-1.2 -3,-0.8 -1,-0.2 0.918 65.5 58.0 -64.6 -45.0 1.9 17.4 0.6 22 276 A N G < S- 0 0 98 -3,-0.6 -1,-0.3 1,-0.1 -2,-0.1 -0.142 130.5 -93.0 -80.0 42.2 5.6 18.5 0.1 23 277 A S < 0 0 116 -2,-1.2 -2,-0.2 -3,-0.8 -1,-0.1 0.862 360.0 360.0 48.7 41.4 5.8 16.1 -2.9 24 278 A A 0 0 41 -5,-0.1 63,-0.3 -4,-0.1 -1,-0.2 0.098 360.0 360.0-175.1 360.0 7.1 13.4 -0.5 25 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 26 1 B M 0 0 68 0, 0.0 16,-1.7 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 141.9 15.6 0.1 2.2 27 2 B Q E -A 41 0A 88 14,-0.3 62,-2.3 12,-0.0 63,-0.4 -0.978 360.0-179.6-133.4 145.2 12.8 -0.1 4.7 28 3 B I E -A 40 0A 0 12,-2.1 12,-1.3 -2,-0.3 2,-0.5 -0.996 23.5-126.7-144.2 145.8 9.1 0.9 4.6 29 4 B F E -Ab 39 91A 67 61,-1.5 63,-2.2 -2,-0.3 2,-0.6 -0.826 16.2-147.6 -98.4 127.8 6.2 0.8 7.1 30 5 B V E -Ab 38 92A 3 8,-2.6 8,-1.2 -2,-0.5 2,-0.6 -0.812 11.9-157.9 -94.0 121.4 2.9 -0.9 6.1 31 6 B K E -Ab 37 93A 68 61,-2.7 63,-2.3 -2,-0.6 6,-0.2 -0.888 8.1-143.0-104.7 119.8 -0.1 0.7 7.7 32 7 B T E >> -A 36 0A 18 4,-2.2 3,-0.9 -2,-0.6 4,-0.7 -0.533 21.4-120.8 -79.4 143.4 -3.3 -1.4 7.9 33 8 B L T 34 S+ 0 0 84 1,-0.3 -1,-0.1 61,-0.2 62,-0.1 0.851 115.1 58.2 -49.8 -37.3 -6.6 0.2 7.4 34 9 B T T 34 S- 0 0 129 2,-0.1 -1,-0.3 1,-0.1 -3,-0.0 0.896 130.0 -88.3 -61.4 -41.7 -7.5 -0.9 10.9 35 10 B G T <4 S+ 0 0 53 -3,-0.9 2,-0.3 1,-0.2 -2,-0.2 0.592 79.3 124.5 129.7 65.1 -4.6 1.0 12.4 36 11 B K E < -A 32 0A 127 -4,-0.7 -4,-2.2 2,-0.0 2,-0.3 -0.867 35.8-159.3-154.0 116.1 -1.3 -0.9 12.6 37 12 B T E -A 31 0A 77 -2,-0.3 2,-0.4 -6,-0.2 -6,-0.2 -0.735 13.8-175.0 -95.4 141.0 2.1 0.0 11.2 38 13 B I E -A 30 0A 26 -8,-1.2 -8,-2.6 -2,-0.3 2,-0.1 -0.997 27.4-113.5-141.2 136.3 4.8 -2.6 10.6 39 14 B T E +A 29 0A 59 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.369 35.2 178.2 -64.5 139.3 8.4 -2.5 9.4 40 15 B L E -A 28 0A 18 -12,-1.3 -12,-2.1 -2,-0.1 2,-0.4 -0.831 16.9-151.5-151.1 107.5 9.1 -4.1 6.1 41 16 B E E +A 27 0A 76 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.3 -0.630 25.7 163.8 -80.8 131.3 12.5 -4.2 4.3 42 17 B V - 0 0 0 -16,-1.7 2,-0.1 -2,-0.4 -2,-0.1 -0.970 37.6-115.6-152.0 132.7 12.4 -4.2 0.5 43 18 B E - 0 0 98 -2,-0.3 38,-0.3 1,-0.1 8,-0.1 -0.415 21.5-132.1 -67.6 138.4 15.0 -3.6 -2.2 44 19 B S S S+ 0 0 58 1,-0.2 37,-1.1 -2,-0.1 38,-1.1 0.895 108.7 52.1 -57.0 -42.4 14.3 -0.6 -4.4 45 20 B S S S+ 0 0 83 36,-0.2 -1,-0.2 35,-0.2 -2,-0.0 0.890 91.4 92.3 -61.7 -41.3 15.0 -2.7 -7.5 46 21 B D S S- 0 0 54 34,-0.1 35,-1.0 1,-0.1 36,-0.1 -0.295 79.4-125.1 -58.1 134.7 12.6 -5.4 -6.3 47 22 B T B > -E 80 0B 40 33,-0.2 4,-1.1 34,-0.1 3,-0.5 -0.075 27.9 -95.3 -73.1 177.9 9.1 -4.9 -7.7 48 23 B I H > S+ 0 0 0 31,-1.0 4,-2.6 28,-0.4 5,-0.3 0.874 119.4 67.9 -62.6 -39.9 5.9 -4.7 -5.7 49 24 B D H > S+ 0 0 85 1,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.881 99.4 51.0 -48.0 -43.5 5.2 -8.4 -6.2 50 25 B N H > S+ 0 0 50 -3,-0.5 4,-2.1 2,-0.2 -1,-0.3 0.925 108.5 51.3 -61.2 -45.7 8.2 -9.2 -4.0 51 26 B V H X S+ 0 0 1 -4,-1.1 4,-2.4 1,-0.2 -2,-0.2 0.922 109.0 50.2 -57.7 -47.0 6.9 -6.8 -1.3 52 27 B K H X S+ 0 0 0 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.878 106.6 56.8 -60.0 -38.6 3.5 -8.5 -1.3 53 28 B S H X S+ 0 0 42 -4,-2.0 4,-2.2 -5,-0.3 -1,-0.2 0.945 108.7 45.1 -58.1 -50.0 5.3 -11.9 -1.0 54 29 B K H X S+ 0 0 58 -4,-2.1 4,-2.4 1,-0.2 5,-0.2 0.911 111.7 53.0 -60.4 -43.7 7.0 -10.8 2.2 55 30 B I H X>S+ 0 0 4 -4,-2.4 4,-2.3 1,-0.2 5,-1.2 0.879 108.4 51.4 -59.2 -39.4 3.8 -9.3 3.6 56 31 B Q H X5S+ 0 0 84 -4,-2.4 4,-0.6 3,-0.2 -1,-0.2 0.927 110.1 47.8 -63.9 -47.6 2.1 -12.6 3.0 57 32 B D H <5S+ 0 0 127 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.889 122.3 34.4 -61.6 -43.1 4.7 -14.6 4.8 58 33 B K H <5S+ 0 0 137 -4,-2.4 -2,-0.2 -5,-0.2 -3,-0.2 0.975 134.6 21.4 -77.6 -62.7 4.7 -12.3 7.8 59 34 B E H <5S- 0 0 58 -4,-2.3 -3,-0.2 -5,-0.2 -2,-0.1 0.867 99.6-126.2 -76.3 -39.2 1.1 -11.1 8.1 60 35 B G << + 0 0 55 -5,-1.2 -4,-0.2 -4,-0.6 -3,-0.1 0.916 58.2 133.8 91.1 53.7 -0.5 -14.0 6.2 61 36 B I - 0 0 42 -9,-0.2 -1,-0.3 -6,-0.2 -2,-0.1 -0.997 58.2-107.9-139.3 131.8 -2.6 -12.2 3.5 62 37 B P > - 0 0 74 0, 0.0 4,-2.3 0, 0.0 -9,-0.0 -0.240 23.8-131.2 -56.7 139.6 -2.8 -13.0 -0.3 63 38 B P T 4 S+ 0 0 29 0, 0.0 -10,-0.0 0, 0.0 14,-0.0 0.907 107.1 50.2 -58.8 -45.4 -1.1 -10.4 -2.5 64 39 B D T 4 S+ 0 0 109 1,-0.2 33,-0.2 3,-0.1 13,-0.0 0.898 110.7 50.3 -61.1 -42.5 -4.2 -10.0 -4.8 65 40 B Q T 4 S+ 0 0 46 31,-0.1 32,-2.6 2,-0.0 -1,-0.2 0.962 104.3 63.7 -61.2 -54.9 -6.4 -9.5 -1.8 66 41 B Q E < -C 96 0A 2 -4,-2.3 2,-0.4 30,-0.2 30,-0.2 -0.472 67.9-167.8 -74.3 142.6 -4.3 -6.8 -0.2 67 42 B R E -C 95 0A 70 28,-1.0 28,-1.3 -2,-0.2 2,-0.3 -0.974 8.3-148.6-137.3 121.2 -3.8 -3.5 -2.0 68 43 B L E -C 94 0A 0 -2,-0.4 7,-1.9 7,-0.3 2,-0.4 -0.638 11.8-163.7 -89.1 144.8 -1.3 -0.8 -1.2 69 44 B I E +CD 93 74A 0 24,-1.8 24,-2.3 -2,-0.3 2,-0.3 -0.983 16.8 154.3-130.8 140.3 -1.9 2.9 -1.8 70 45 B F E > + D 0 73A 22 3,-2.0 3,-1.1 -2,-0.4 22,-0.1 -0.955 62.7 10.5-164.1 143.2 0.5 5.8 -1.9 71 46 B A T 3 S- 0 0 49 -2,-0.3 -58,-0.1 1,-0.3 3,-0.1 0.864 128.5 -60.7 54.1 38.8 0.8 9.3 -3.4 72 47 B G T 3 S+ 0 0 23 -59,-0.3 2,-0.3 -60,-0.2 -1,-0.3 0.839 120.7 101.2 58.8 35.0 -2.8 9.0 -4.5 73 48 B K E < S-D 70 0A 148 -3,-1.1 -3,-2.0 -60,-0.1 2,-0.3 -0.959 72.6-123.5-152.9 130.6 -2.0 5.9 -6.6 74 49 B Q E -D 69 0A 69 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.578 34.9-116.2 -75.7 128.5 -2.4 2.2 -6.0 75 50 B L - 0 0 2 -7,-1.9 -7,-0.3 -2,-0.3 2,-0.3 -0.484 28.0-134.8 -68.1 125.4 0.8 0.2 -6.3 76 51 B E > - 0 0 125 -2,-0.3 2,-2.1 1,-0.1 3,-0.8 -0.602 13.7-123.5 -83.2 140.2 0.8 -2.2 -9.2 77 52 B D T 3 S+ 0 0 64 -2,-0.3 -1,-0.1 1,-0.2 -30,-0.1 -0.220 104.6 49.4 -76.8 49.4 2.0 -5.8 -8.6 78 53 B G T 3 S+ 0 0 50 -2,-2.1 2,-0.3 1,-0.1 -1,-0.2 0.135 85.2 94.0-177.4 41.1 4.5 -5.4 -11.4 79 54 B R < - 0 0 114 -3,-0.8 -31,-1.0 -33,-0.0 -1,-0.1 -0.994 68.7-113.6-146.6 136.2 6.5 -2.2 -11.1 80 55 B T B >> -E 47 0B 49 -2,-0.3 4,-0.9 -33,-0.2 3,-0.7 -0.387 20.8-130.1 -68.8 142.8 9.9 -1.3 -9.5 81 56 B L H 3>>S+ 0 0 3 -37,-1.1 4,-1.8 -35,-1.0 5,-0.9 0.808 102.3 72.0 -61.0 -32.2 9.9 0.9 -6.5 82 57 B S H 345S+ 0 0 69 -38,-1.1 -1,-0.2 1,-0.2 3,-0.2 0.901 94.9 51.1 -51.6 -46.6 12.6 3.1 -8.1 83 58 B D H <45S+ 0 0 98 -3,-0.7 -1,-0.2 1,-0.2 -2,-0.2 0.908 109.3 50.7 -58.8 -42.5 10.1 4.5 -10.6 84 59 B Y H <5S- 0 0 68 -4,-0.9 -1,-0.2 -3,-0.1 -2,-0.2 0.810 97.1-147.0 -64.3 -31.3 7.7 5.4 -7.7 85 60 B N T <5 - 0 0 119 -4,-1.8 2,-0.2 -3,-0.2 -3,-0.2 0.924 22.3-165.6 61.8 45.3 10.6 7.1 -6.0 86 61 B I < - 0 0 13 -5,-0.9 -1,-0.2 1,-0.1 3,-0.1 -0.429 19.0-114.7 -66.8 133.0 9.2 6.2 -2.6 87 62 B Q > - 0 0 85 -63,-0.3 3,-1.1 -2,-0.2 2,-0.1 -0.275 41.2 -86.8 -65.9 152.4 10.8 8.0 0.3 88 63 B K T 3 S+ 0 0 131 1,-0.3 -60,-0.1 -60,-0.1 -1,-0.1 -0.389 112.1 6.7 -63.4 133.4 12.8 6.1 2.9 89 64 B E T 3 S+ 0 0 111 -62,-2.3 -1,-0.3 1,-0.2 -61,-0.2 0.884 92.7 171.3 60.9 41.7 10.7 4.6 5.6 90 65 B S < - 0 0 12 -3,-1.1 -61,-1.5 -63,-0.4 2,-0.4 -0.530 32.3-119.9 -83.9 150.1 7.4 5.6 3.9 91 66 B T E -b 29 0A 43 -2,-0.2 2,-0.5 -63,-0.2 -61,-0.2 -0.756 22.4-156.3 -92.6 132.8 4.0 4.5 5.1 92 67 B L E -b 30 0A 1 -63,-2.2 -61,-2.7 -2,-0.4 2,-0.4 -0.927 16.0-126.8-112.3 129.7 1.8 2.5 2.7 93 68 B H E -bC 31 69A 9 -24,-2.3 -24,-1.8 -2,-0.5 2,-0.4 -0.588 21.6-142.1 -77.3 128.3 -2.0 2.4 3.0 94 69 B L E + C 0 68A 7 -63,-2.3 2,-0.3 -2,-0.4 -61,-0.2 -0.738 21.8 176.5 -91.9 135.9 -3.4 -1.2 3.2 95 70 B V E - C 0 67A 0 -28,-1.3 -28,-1.0 -2,-0.4 2,-0.5 -0.909 17.0-151.5-144.4 112.1 -6.8 -1.9 1.5 96 71 B L E - C 0 66A 76 -2,-0.3 -30,-0.2 -30,-0.2 -31,-0.1 -0.720 26.6-117.9 -86.6 124.7 -8.3 -5.3 1.3 97 72 B R - 0 0 135 -32,-2.6 2,-0.1 -2,-0.5 3,-0.1 -0.366 32.8-112.6 -62.0 132.2 -10.5 -5.9 -1.8 98 73 B L - 0 0 88 1,-0.1 -1,-0.1 -2,-0.1 -92,-0.0 -0.431 35.6-102.3 -68.8 137.8 -14.1 -6.6 -0.8 99 74 B R - 0 0 188 -2,-0.1 -1,-0.1 1,-0.1 -34,-0.0 -0.307 22.1-129.9 -60.8 139.5 -15.4 -10.2 -1.6 100 75 B G 0 0 79 -3,-0.1 -1,-0.1 1,-0.0 -2,-0.1 0.875 360.0 360.0 -58.4 -39.9 -17.5 -10.5 -4.7 101 76 B G 0 0 140 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 -0.393 360.0 360.0 -56.9 360.0 -20.2 -12.4 -2.7