==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HORMONE/GROWTH FACTOR 08-APR-99 1QFA . COMPND 2 MOLECULE: PROTEIN (NEUROPEPTIDE Y); . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.J.BARNHAM,F.CATALFAMO,P.K.PALLAGHY,G.J.HOWLETT,R.S.NORTON . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1718.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 10 76.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 24 A L >> 0 0 137 0, 0.0 4,-2.7 0, 0.0 3,-1.1 0.000 360.0 360.0 360.0 -8.8 0.9 0.1 -1.3 2 25 A R H 3>> + 0 0 155 1,-0.3 4,-2.2 2,-0.2 5,-2.1 0.929 360.0 71.7 -67.5 -41.6 -0.2 -3.2 -2.6 3 26 A H H 345S+ 0 0 155 1,-0.2 -1,-0.3 3,-0.2 0, 0.0 0.747 116.1 22.8 -44.9 -23.3 -2.6 -1.2 -4.7 4 27 A Y H <45S+ 0 0 160 -3,-1.1 -2,-0.2 3,-0.1 -1,-0.2 0.660 131.6 39.1-118.2 -25.8 0.6 -0.2 -6.6 5 28 A L H X5S+ 0 0 101 -4,-2.7 4,-0.8 2,-0.2 -3,-0.2 0.801 125.0 39.7 -91.5 -37.6 3.1 -3.0 -5.9 6 29 A N H X5S+ 0 0 75 -4,-2.2 4,-3.0 -5,-0.4 3,-0.5 0.887 113.9 51.9 -78.9 -41.2 0.6 -5.7 -6.1 7 30 A L H >>S+ 0 0 55 -6,-0.4 4,-2.7 -4,-0.2 5,-0.5 0.807 107.8 44.2 -70.3 -29.4 2.4 -4.0 -10.4 9 32 A T H X5S+ 0 0 51 -4,-0.8 4,-1.5 -3,-0.5 -2,-0.2 0.898 111.6 53.2 -81.5 -38.4 2.6 -7.8 -10.1 10 33 A R H <5S+ 0 0 213 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.772 122.4 32.4 -64.2 -24.6 -0.9 -8.1 -11.5 11 34 A Q H <5S+ 0 0 117 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.758 132.8 27.4-102.9 -31.7 0.3 -6.1 -14.5 12 35 A R H <5 0 0 193 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.798 360.0 360.0-100.9 -34.9 4.0 -7.1 -14.7 13 36 A Y << 0 0 224 -4,-1.5 -1,-0.2 -5,-0.5 -4,-0.1 -0.316 360.0 360.0 -91.9 360.0 4.1 -10.7 -13.3