==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 19-JUL-99 1QKF . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S19; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR M.HELGSTRAND,A.V.RAK,P.ALLARD,N.DAVYDOVA,M.B.GARBER,T.HARD . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4917.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 60.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 16.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A G 0 0 94 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -81.6 45.5 -9.1 -2.5 2 9 A V - 0 0 107 2,-0.0 2,-0.4 30,-0.0 29,-0.1 -0.987 360.0-176.3-131.2 136.6 48.3 -6.9 -1.0 3 10 A F - 0 0 69 27,-0.8 2,-0.6 -2,-0.4 29,-0.4 -0.974 18.4-141.1-131.3 146.6 51.5 -8.0 0.9 4 11 A V - 0 0 42 -2,-0.4 2,-0.4 27,-0.2 27,-0.1 -0.912 34.0-110.7-108.6 121.1 54.3 -6.1 2.6 5 12 A D >> - 0 0 3 -2,-0.6 4,-1.4 27,-0.3 3,-1.1 -0.271 27.7-167.0 -51.3 105.1 57.8 -7.4 2.1 6 13 A D H 3> S+ 0 0 113 -2,-0.4 4,-2.4 1,-0.3 -1,-0.2 0.804 86.3 66.9 -66.1 -25.0 58.6 -8.7 5.6 7 14 A H H 34 S+ 0 0 98 1,-0.2 4,-0.4 2,-0.2 -1,-0.3 0.816 100.9 48.0 -66.1 -26.9 62.2 -9.0 4.4 8 15 A L H X> S+ 0 0 0 -3,-1.1 4,-2.1 2,-0.2 3,-0.9 0.878 109.4 52.4 -80.6 -37.2 62.3 -5.2 4.2 9 16 A L H 3X S+ 0 0 32 -4,-1.4 4,-2.8 1,-0.2 5,-0.4 0.916 99.3 63.1 -64.0 -41.3 60.8 -4.8 7.7 10 17 A E H 3< S+ 0 0 75 -4,-2.4 -1,-0.2 1,-0.2 4,-0.2 0.777 114.0 35.7 -55.9 -22.5 63.5 -7.1 9.1 11 18 A K H <> S+ 0 0 62 -3,-0.9 4,-1.1 -4,-0.4 -1,-0.2 0.730 114.9 54.2-101.8 -28.4 66.0 -4.4 8.0 12 19 A V H X S+ 0 0 0 -4,-2.1 4,-2.2 2,-0.2 5,-0.2 0.889 101.6 57.4 -74.8 -37.2 63.8 -1.3 8.7 13 20 A L H X S+ 0 0 73 -4,-2.8 4,-1.2 1,-0.2 -1,-0.2 0.863 105.4 53.9 -62.2 -28.6 63.1 -2.2 12.3 14 21 A E H > S+ 0 0 83 -5,-0.4 4,-1.9 1,-0.2 6,-0.3 0.889 109.0 47.0 -71.3 -36.0 66.9 -2.2 12.7 15 22 A L H X>S+ 0 0 19 -4,-1.1 4,-1.3 1,-0.2 5,-0.5 0.797 112.4 50.1 -75.5 -25.7 67.0 1.4 11.2 16 23 A N H <5S+ 0 0 67 -4,-2.2 -1,-0.2 3,-0.2 -2,-0.2 0.706 111.2 49.9 -83.8 -18.5 64.1 2.4 13.6 17 24 A A H <5S+ 0 0 82 -4,-1.2 -2,-0.2 -5,-0.2 -3,-0.2 0.865 122.2 30.3 -86.3 -38.8 66.0 0.9 16.6 18 25 A K H <5S- 0 0 133 -4,-1.9 -2,-0.2 -5,-0.1 -3,-0.2 0.752 107.9-120.9 -89.3 -26.6 69.4 2.6 15.9 19 26 A G T <5 + 0 0 58 -4,-1.3 2,-0.4 -5,-0.3 -3,-0.2 0.612 57.0 154.7 95.6 14.3 67.7 5.7 14.3 20 27 A E < - 0 0 86 -5,-0.5 2,-1.0 -6,-0.3 -1,-0.3 -0.621 33.7-155.4 -78.7 127.0 69.5 5.2 10.9 21 28 A K + 0 0 153 -2,-0.4 19,-0.1 19,-0.1 -1,-0.1 -0.607 46.4 125.5-101.3 74.8 67.6 6.7 8.0 22 29 A R - 0 0 151 -2,-1.0 19,-2.0 -10,-0.1 2,-0.3 -0.149 60.3 -81.7-109.9-153.1 69.0 4.6 5.1 23 30 A L E -a 41 0A 59 17,-0.2 2,-0.5 -2,-0.1 19,-0.3 -0.876 25.3-152.8-119.0 152.8 67.2 2.5 2.4 24 31 A I E -a 42 0A 4 17,-0.7 19,-1.4 -2,-0.3 2,-0.1 -0.963 15.1-145.2-125.9 116.5 65.9 -1.1 2.5 25 32 A K E -a 43 0A 93 -2,-0.5 2,-0.3 17,-0.2 19,-0.1 -0.411 15.2-166.8 -78.6 156.6 65.7 -3.1 -0.8 26 33 A T + 0 0 0 17,-1.4 20,-0.1 -2,-0.1 25,-0.0 -0.994 19.5 176.3-143.0 148.4 62.9 -5.6 -1.5 27 34 A W + 0 0 112 -2,-0.3 17,-0.1 18,-0.1 23,-0.1 -0.186 47.6 102.1-147.7 50.5 62.4 -8.4 -4.1 28 35 A S S S- 0 0 49 1,-0.1 18,-0.0 17,-0.0 -24,-0.0 0.726 76.5-105.1 -99.7 -94.3 59.1 -10.3 -3.5 29 36 A R S S+ 0 0 173 -26,-0.1 19,-0.1 16,-0.1 -1,-0.1 0.123 103.2 31.6-164.0 -65.4 56.0 -9.4 -5.7 30 37 A R S S+ 0 0 130 17,-0.1 -27,-0.8 2,-0.0 16,-0.1 0.017 79.6 174.8 -97.4 29.0 53.3 -7.2 -4.2 31 38 A S - 0 0 5 14,-0.6 2,-0.3 -27,-0.1 -27,-0.2 -0.035 6.1-179.1 -38.4 123.1 55.8 -5.4 -2.0 32 39 A T - 0 0 12 -29,-0.4 -27,-0.3 32,-0.0 31,-0.2 -0.869 26.1-104.6-127.1 161.3 53.9 -2.6 -0.1 33 40 A I - 0 0 5 -2,-0.3 28,-0.3 26,-0.2 31,-0.1 -0.359 32.8-163.4 -81.9 167.1 55.1 0.2 2.3 34 41 A V > - 0 0 23 26,-0.1 3,-1.3 -2,-0.1 26,-0.1 -0.833 38.0 -94.1-140.0 176.7 54.4 0.1 6.1 35 42 A P G > S+ 0 0 96 0, 0.0 3,-1.8 0, 0.0 25,-0.1 0.839 119.9 63.9 -66.1 -32.8 54.4 2.5 9.1 36 43 A E G 3 S+ 0 0 57 1,-0.3 3,-0.4 2,-0.1 21,-0.0 0.630 94.0 64.8 -66.9 -9.8 58.0 1.5 9.9 37 44 A M G X + 0 0 0 -3,-1.3 3,-2.0 1,-0.2 18,-0.5 0.444 64.1 110.1 -92.4 0.6 59.0 3.0 6.5 38 45 A V T < S+ 0 0 59 -3,-1.8 19,-0.2 1,-0.3 -1,-0.2 0.548 93.1 27.3 -55.1 -2.2 58.0 6.6 7.6 39 46 A G T 3 S+ 0 0 8 -3,-0.4 2,-0.3 17,-0.2 -1,-0.3 0.016 109.3 79.9-149.2 33.9 61.7 7.5 7.5 40 47 A H E < - B 0 55A 5 -3,-2.0 15,-2.4 15,-0.6 2,-1.1 -0.991 69.2-128.5-143.8 153.5 63.4 5.2 5.0 41 48 A T E -aB 23 54A 36 -19,-2.0 -17,-0.7 -2,-0.3 2,-0.6 -0.724 35.8-175.2 -99.9 83.7 63.9 4.8 1.2 42 49 A I E -aB 24 53A 0 11,-1.6 11,-2.4 -2,-1.1 2,-2.1 -0.710 24.9-137.6 -86.3 123.0 62.7 1.2 0.7 43 50 A A E -aB 25 52A 3 -19,-1.4 -17,-1.4 -2,-0.6 -1,-0.1 -0.503 26.0-155.2 -78.3 80.9 63.1 -0.1 -2.8 44 51 A V E - B 0 51A 2 -2,-2.1 7,-2.2 7,-1.6 2,-1.0 -0.314 19.6-117.3 -57.5 132.2 59.8 -1.8 -3.0 45 52 A Y E - B 0 50A 47 5,-0.2 -14,-0.6 1,-0.2 5,-0.2 -0.600 24.9-168.2 -75.5 105.4 59.9 -4.7 -5.6 46 53 A N - 0 0 78 3,-2.7 -1,-0.2 -2,-1.0 4,-0.1 0.520 64.0 -84.3 -71.3 -1.4 57.3 -3.6 -8.2 47 54 A G S S+ 0 0 24 2,-0.4 -1,-0.1 -3,-0.0 3,-0.1 0.054 123.8 23.8 119.1 -22.8 57.6 -7.1 -9.6 48 55 A K S S+ 0 0 170 1,-0.3 2,-0.3 -19,-0.1 -3,-0.1 0.490 121.2 41.2-140.6 -30.5 60.7 -6.3 -11.7 49 56 A Q - 0 0 105 -5,-0.1 -3,-2.7 2,-0.0 2,-0.8 -0.917 68.4-127.7-127.7 155.9 62.5 -3.3 -10.2 50 57 A H E -B 45 0A 75 -2,-0.3 -5,-0.2 -5,-0.2 -6,-0.2 -0.858 23.4-164.1-101.3 106.2 63.3 -2.1 -6.7 51 58 A V E -B 44 0A 46 -7,-2.2 -7,-1.6 -2,-0.8 2,-1.5 -0.779 11.9-147.0 -96.2 100.1 62.0 1.5 -6.3 52 59 A P E -B 43 0A 69 0, 0.0 2,-0.6 0, 0.0 -9,-0.4 -0.447 26.4-178.9 -66.0 89.6 63.8 3.0 -3.2 53 60 A V E -B 42 0A 21 -11,-2.4 -11,-1.6 -2,-1.5 2,-1.0 -0.829 27.3-136.9 -97.5 119.4 60.9 5.2 -2.1 54 61 A Y E -B 41 0A 92 -2,-0.6 2,-0.3 -13,-0.3 -13,-0.3 -0.583 29.3-153.9 -73.6 104.1 61.5 7.4 1.0 55 62 A I E -B 40 0A 0 -15,-2.4 -15,-0.6 -2,-1.0 2,-0.1 -0.616 12.1-168.5 -84.1 140.9 58.2 6.9 2.8 56 63 A T > - 0 0 56 -2,-0.3 4,-0.5 -17,-0.1 -17,-0.2 -0.211 48.4 -78.4-105.9-159.5 56.8 9.5 5.2 57 64 A E T 4 S+ 0 0 158 -19,-0.2 -19,-0.1 1,-0.2 -2,-0.0 0.208 127.8 38.3 -90.5 19.5 53.9 9.1 7.6 58 65 A N T 4 S+ 0 0 127 -20,-0.0 -1,-0.2 -23,-0.0 -3,-0.0 0.520 102.6 61.7-139.9 -18.9 51.3 9.6 4.7 59 66 A M T >4 S+ 0 0 57 -5,-0.1 3,-0.5 8,-0.1 4,-0.3 0.756 85.8 91.5 -85.2 -23.2 52.6 7.9 1.5 60 67 A V T 3< + 0 0 30 -4,-0.5 -26,-0.1 1,-0.2 4,-0.0 -0.214 54.3 71.1 -66.2 162.4 52.6 4.4 3.1 61 68 A G T 3 S+ 0 0 53 -28,-0.3 -1,-0.2 1,-0.1 -27,-0.1 0.216 100.1 41.8 116.0 -15.2 49.4 2.2 2.9 62 69 A H S < S- 0 0 97 -3,-0.5 -2,-0.1 -28,-0.1 -1,-0.1 0.551 99.1-100.4-124.3 -82.4 49.6 1.2 -0.8 63 70 A K S S- 0 0 91 -4,-0.3 -19,-0.1 -31,-0.2 -3,-0.1 0.163 86.5 -37.1 177.7 -31.5 52.9 0.3 -2.6 64 71 A L S >> S+ 0 0 45 -5,-0.1 4,-1.4 -31,-0.1 3,-0.8 0.212 111.7 93.9 173.6 -15.5 54.1 3.4 -4.5 65 72 A G T 34 S+ 0 0 23 1,-0.2 -6,-0.0 2,-0.2 0, 0.0 0.735 87.6 55.9 -69.6 -17.7 50.9 5.1 -5.9 66 73 A E T 34 S+ 0 0 61 -7,-0.3 -1,-0.2 1,-0.2 -6,-0.1 0.687 110.1 44.6 -86.1 -16.4 50.8 7.3 -2.8 67 74 A F T <4 S+ 0 0 33 -3,-0.8 -2,-0.2 1,-0.2 -1,-0.2 0.654 126.1 31.6 -97.0 -19.9 54.3 8.5 -3.5 68 75 A A < + 0 0 55 -4,-1.4 2,-1.3 -9,-0.1 -1,-0.2 -0.296 69.0 144.5-133.3 52.3 53.6 9.0 -7.3 69 76 A P + 0 0 90 0, 0.0 2,-1.0 0, 0.0 3,-0.1 -0.270 22.9 136.2 -84.9 50.4 49.9 10.0 -7.4 70 77 A T S S- 0 0 90 -2,-1.3 -3,-0.0 1,-0.3 -5,-0.0 -0.466 73.1 -93.7 -97.1 64.4 50.6 12.4 -10.4 71 78 A R - 0 0 210 -2,-1.0 -1,-0.3 0, 0.0 2,-0.2 -0.021 63.6 -56.9 55.6-166.7 47.5 11.4 -12.5 72 79 A T 0 0 114 -3,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.681 360.0 360.0-106.3 163.2 48.0 8.7 -15.2 73 80 A Y 0 0 269 -2,-0.2 -3,-0.1 0, 0.0 0, 0.0 -0.290 360.0 360.0 52.7 360.0 50.5 8.6 -18.2