==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 20-JUL-99 1QKH . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S19; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR M.HELGSTRAND,A.V.RAK,P.ALLARD,N.DAVYDOVA,M.B.GARBER,T.HARD . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4684.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 57.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A G 0 0 133 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -88.1 9.8 4.1 -15.4 2 9 A V - 0 0 109 1,-0.0 2,-0.4 29,-0.0 29,-0.1 -0.432 360.0-131.1 -81.1 159.0 8.6 3.9 -11.8 3 10 A F - 0 0 70 27,-0.5 2,-0.6 -2,-0.1 29,-0.5 -0.885 6.3-142.7-112.7 143.3 11.0 3.8 -8.8 4 11 A V - 0 0 41 -2,-0.4 27,-0.1 27,-0.2 29,-0.1 -0.899 34.6-107.1-105.6 117.6 10.9 1.4 -5.9 5 12 A D >> - 0 0 7 -2,-0.6 4,-1.1 27,-0.3 3,-0.8 -0.164 26.7-162.4 -44.4 112.7 11.8 3.0 -2.5 6 13 A D H 3> S+ 0 0 118 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.765 87.7 66.8 -71.2 -22.0 15.3 1.6 -1.8 7 14 A H H 34 S+ 0 0 90 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.794 98.1 51.7 -70.1 -25.1 14.8 2.7 1.8 8 15 A L H X> S+ 0 0 0 -3,-0.8 4,-3.3 2,-0.2 3,-0.8 0.886 107.1 53.0 -77.5 -37.5 12.0 -0.0 2.2 9 16 A L H 3X>S+ 0 0 41 -4,-1.1 4,-2.9 1,-0.2 5,-0.5 0.944 98.3 62.5 -62.5 -46.9 14.4 -2.7 0.8 10 17 A E H 3<5S+ 0 0 83 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.780 118.8 30.2 -51.2 -23.5 17.1 -1.9 3.4 11 18 A K H <>5S+ 0 0 85 -3,-0.8 4,-1.1 -4,-0.4 -2,-0.2 0.745 119.8 51.4-106.1 -33.6 14.4 -2.9 6.0 12 19 A V H X5S+ 0 0 0 -4,-3.3 4,-2.0 2,-0.2 3,-0.2 0.906 105.3 54.7 -73.3 -39.6 12.4 -5.6 4.0 13 20 A L H X5S+ 0 0 87 -4,-2.9 4,-0.6 1,-0.3 -1,-0.2 0.851 106.9 54.2 -63.1 -27.2 15.5 -7.6 2.9 14 21 A E H >S+ 0 0 8 -4,-1.1 4,-1.7 -3,-0.2 5,-1.4 0.784 108.9 54.1 -78.0 -24.1 12.8 -9.2 7.3 16 23 A N H <5S+ 0 0 64 -4,-2.0 -1,-0.2 3,-0.2 -2,-0.2 0.634 103.2 59.2 -82.7 -11.6 13.3 -11.7 4.4 17 24 A A H <5S+ 0 0 88 -4,-0.6 -2,-0.2 -3,-0.3 -1,-0.2 0.879 123.3 18.1 -83.7 -39.8 16.5 -12.9 6.1 18 25 A K H <5S- 0 0 148 -4,-1.1 -2,-0.2 2,-0.1 -3,-0.1 0.692 110.5-108.0-103.2 -23.4 14.9 -14.0 9.4 19 26 A G T <5 + 0 0 46 -4,-1.7 2,-0.3 -5,-0.3 -3,-0.2 0.731 53.5 170.0 102.1 29.1 11.3 -14.2 8.3 20 27 A E < - 0 0 58 -5,-1.4 2,-0.5 -6,-0.2 -1,-0.2 -0.577 22.6-161.0 -76.1 130.3 9.9 -11.1 10.0 21 28 A K + 0 0 156 -2,-0.3 19,-0.1 19,-0.1 -1,-0.1 -0.444 48.3 119.1-107.3 59.7 6.3 -10.2 8.9 22 29 A R - 0 0 155 -2,-0.5 19,-2.0 -10,-0.1 2,-0.4 -0.080 65.2 -88.1-102.9-154.3 6.2 -6.6 10.1 23 30 A L - 0 0 36 17,-0.2 2,-0.5 -2,-0.1 19,-0.3 -0.947 24.1-148.4-124.5 145.2 5.8 -3.3 8.2 24 31 A I - 0 0 5 17,-0.4 19,-1.2 -2,-0.4 2,-0.1 -0.937 16.0-143.9-114.6 119.8 8.4 -1.1 6.5 25 32 A K B -a 43 0A 75 -2,-0.5 2,-0.3 17,-0.2 19,-0.1 -0.446 16.8-168.4 -79.6 154.6 7.8 2.7 6.3 26 33 A T - 0 0 0 17,-1.4 20,-0.1 -2,-0.1 25,-0.0 -0.980 20.9-179.7-141.4 153.5 8.8 4.9 3.3 27 34 A W + 0 0 125 -2,-0.3 17,-0.1 18,-0.1 23,-0.1 -0.007 50.6 103.3-144.5 35.0 9.1 8.6 2.6 28 35 A S S S- 0 0 20 1,-0.1 18,-0.1 17,-0.0 -2,-0.0 0.830 74.1-116.3 -84.6 -96.0 10.3 9.0 -1.1 29 36 A R S S+ 0 0 140 16,-0.2 19,-0.2 -26,-0.1 -1,-0.1 0.041 98.5 31.4-171.8 -61.9 7.5 10.0 -3.6 30 37 A R S S+ 0 0 108 17,-0.1 -27,-0.5 2,-0.0 16,-0.1 -0.045 80.7 170.3-103.5 31.2 6.7 7.4 -6.3 31 38 A S - 0 0 1 14,-1.0 2,-0.3 -27,-0.1 -27,-0.2 -0.109 11.3-169.2 -44.7 130.9 7.6 4.5 -4.0 32 39 A T - 0 0 6 -29,-0.5 -27,-0.3 32,-0.1 31,-0.2 -0.868 20.6-106.8-124.8 159.1 6.7 1.1 -5.6 33 40 A I - 0 0 3 -2,-0.3 28,-0.1 26,-0.1 31,-0.1 -0.297 32.1-159.9 -79.6 169.5 6.5 -2.4 -4.2 34 41 A V > - 0 0 20 26,-0.1 3,-1.4 29,-0.0 26,-0.1 -0.843 36.6 -95.2-140.2 176.5 9.0 -5.3 -5.0 35 42 A P G > S+ 0 0 96 0, 0.0 3,-1.4 0, 0.0 25,-0.1 0.813 119.6 64.5 -66.9 -29.9 9.2 -9.0 -5.0 36 43 A E G 3 S+ 0 0 69 1,-0.2 3,-0.3 2,-0.1 -21,-0.1 0.549 91.9 67.2 -71.5 -3.6 10.9 -8.9 -1.5 37 44 A M G X + 0 0 0 -3,-1.4 3,-1.9 1,-0.2 18,-0.4 0.356 60.1 113.9 -98.2 7.2 7.6 -7.4 -0.2 38 45 A V T < S+ 0 0 36 -3,-1.4 19,-0.2 1,-0.3 -1,-0.2 0.542 92.2 27.2 -57.5 -1.2 5.5 -10.6 -0.7 39 46 A G T 3 S+ 0 0 15 -3,-0.3 2,-0.3 17,-0.2 -1,-0.3 -0.014 107.6 85.2-150.1 35.4 5.2 -10.8 3.2 40 47 A H E < - B 0 55A 6 -3,-1.9 15,-2.3 15,-0.7 2,-1.1 -0.998 64.5-137.4-142.5 146.3 5.5 -7.2 4.5 41 48 A T E - B 0 54A 32 -19,-2.0 2,-0.6 -2,-0.3 -17,-0.4 -0.733 33.0-174.8 -99.7 84.0 3.1 -4.2 5.0 42 49 A I E - B 0 53A 0 11,-1.6 2,-2.4 -2,-1.1 11,-2.3 -0.724 25.1-138.1 -87.0 120.6 5.3 -1.5 3.7 43 50 A A E -aB 25 52A 0 -19,-1.2 -17,-1.4 -2,-0.6 2,-0.1 -0.465 27.8-158.3 -75.7 78.7 3.8 2.0 4.1 44 51 A V E - B 0 51A 0 -2,-2.4 7,-2.5 7,-1.7 2,-1.0 -0.352 17.7-122.5 -59.9 131.1 4.9 3.2 0.6 45 52 A Y E - B 0 50A 50 5,-0.3 -14,-1.0 1,-0.2 5,-0.2 -0.635 22.5-168.2 -78.1 105.0 5.1 7.0 0.5 46 53 A N - 0 0 46 3,-2.5 -1,-0.2 -2,-1.0 4,-0.1 0.404 67.8 -75.5 -75.1 7.9 2.6 7.9 -2.4 47 54 A G S S+ 0 0 32 2,-0.3 -1,-0.1 -17,-0.0 -17,-0.1 -0.002 127.8 21.5 122.3 -27.4 4.0 11.4 -2.3 48 55 A K S S+ 0 0 151 1,-0.3 2,-0.3 -19,-0.2 -3,-0.1 0.490 120.5 42.2-140.7 -24.9 2.2 12.6 0.9 49 56 A Q - 0 0 88 -5,-0.1 -3,-2.5 2,-0.0 2,-0.9 -0.951 67.4-127.8-132.7 154.5 1.2 9.5 2.9 50 57 A H E -B 45 0A 63 -2,-0.3 -5,-0.3 -5,-0.2 -6,-0.2 -0.827 24.8-163.6 -99.6 101.5 2.8 6.1 3.9 51 58 A V E -B 44 0A 22 -7,-2.5 2,-1.7 -2,-0.9 -7,-1.7 -0.760 14.2-142.8 -90.7 104.1 0.3 3.4 2.9 52 59 A P E -B 43 0A 63 0, 0.0 2,-0.8 0, 0.0 -9,-0.3 -0.437 27.3-176.5 -66.1 87.4 1.3 0.2 4.8 53 60 A V E -B 42 0A 6 -11,-2.3 -11,-1.6 -2,-1.7 2,-1.2 -0.781 22.5-144.7 -92.7 112.6 0.4 -2.2 2.0 54 61 A Y E -B 41 0A 96 -2,-0.8 2,-0.3 -13,-0.3 -13,-0.3 -0.590 24.7-155.6 -75.1 100.4 0.9 -5.9 2.9 55 62 A I E -B 40 0A 0 -15,-2.3 -15,-0.7 -2,-1.2 2,-0.1 -0.622 11.4-169.7 -81.6 135.3 2.1 -7.2 -0.4 56 63 A T > - 0 0 63 -2,-0.3 3,-0.5 -17,-0.1 4,-0.5 -0.108 49.8 -76.1-101.0-155.5 1.6 -10.9 -1.2 57 64 A E T 3 S+ 0 0 151 -19,-0.2 -19,-0.1 1,-0.2 -2,-0.1 0.352 131.1 35.8 -89.4 10.9 3.1 -12.8 -4.2 58 65 A N T 3 S+ 0 0 134 -20,-0.1 -1,-0.2 8,-0.0 -3,-0.0 0.142 101.5 69.9-146.9 24.1 0.6 -11.2 -6.6 59 66 A M S < S+ 0 0 57 -3,-0.5 3,-0.4 8,-0.0 7,-0.1 0.668 75.5 91.7-114.1 -28.0 -0.0 -7.6 -5.4 60 67 A V + 0 0 38 -4,-0.5 -26,-0.1 1,-0.2 -28,-0.0 -0.134 48.6 82.3 -63.0 164.9 3.3 -5.9 -6.2 61 68 A G S S+ 0 0 53 -28,-0.1 -1,-0.2 1,-0.0 -27,-0.0 0.228 91.8 44.1 123.4 -14.5 3.9 -4.1 -9.6 62 69 A H S S- 0 0 99 -3,-0.4 -2,-0.1 -28,-0.1 -3,-0.0 0.556 96.8-101.9-122.0 -85.0 2.3 -0.7 -9.0 63 70 A K S S- 0 0 71 -31,-0.2 -19,-0.2 -59,-0.0 -10,-0.1 0.173 86.4 -36.1 178.7 -30.6 2.9 1.3 -5.7 64 71 A L S >> S+ 0 0 26 -5,-0.1 4,-1.8 -21,-0.1 3,-0.7 0.216 112.8 92.0 174.5 -16.0 -0.2 0.9 -3.5 65 72 A G T 34 S+ 0 0 32 1,-0.2 0, 0.0 2,-0.2 0, 0.0 0.718 87.4 56.7 -71.5 -16.4 -3.2 0.8 -5.9 66 73 A E T 34 S+ 0 0 60 2,-0.2 -1,-0.2 -7,-0.1 -6,-0.1 0.679 116.6 34.5 -86.0 -16.7 -3.0 -3.0 -6.1 67 74 A F T <4 S+ 0 0 39 -3,-0.7 -2,-0.2 1,-0.1 -1,-0.1 0.581 131.0 32.0-109.4 -16.9 -3.3 -3.3 -2.3 68 75 A A < + 0 0 41 -4,-1.8 2,-1.3 -15,-0.1 -2,-0.2 -0.318 65.9 147.2-137.6 55.2 -5.7 -0.3 -1.8 69 76 A P + 0 0 97 0, 0.0 2,-0.3 0, 0.0 -4,-0.1 -0.272 44.8 106.8 -85.3 50.0 -7.9 -0.2 -5.0 70 77 A T - 0 0 113 -2,-1.3 2,-0.1 2,-0.0 -3,-0.0 -0.962 59.0-139.7-129.6 147.2 -10.9 1.1 -3.0 71 78 A R - 0 0 175 -2,-0.3 0, 0.0 2,-0.1 0, 0.0 -0.276 41.0 -89.0 -93.4-175.7 -12.6 4.5 -2.9 72 79 A T 0 0 147 -2,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.807 360.0 360.0 -66.2 -26.2 -14.0 6.4 0.2 73 80 A Y 0 0 199 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.177 360.0 360.0-103.9 360.0 -17.4 4.7 -0.4