==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-MAR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 04-FEB-11 3QMB . COMPND 2 MOLECULE: CPG-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.LAM,C.XU,C.B.BIAN,J.KANIA,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMI . 54 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3915.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 35.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 168 A R 0 0 117 0, 0.0 5,-0.2 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 91.1 15.9 -0.1 21.4 2 169 A S B > -A 5 0A 63 3,-0.6 3,-0.7 0, 0.0 46,-0.0 -0.437 360.0 -72.4-122.3-167.2 16.5 1.5 18.0 3 170 A A T 3 S+ 0 0 85 1,-0.2 3,-0.1 -2,-0.2 0, 0.0 0.803 134.7 35.6 -63.0 -27.9 18.4 4.6 16.6 4 171 A R T 3 S+ 0 0 125 1,-0.1 41,-0.4 45,-0.0 2,-0.4 0.377 112.8 63.8-109.3 5.7 15.7 6.8 18.1 5 172 A M B < -A 2 0A 58 -3,-0.7 -3,-0.6 43,-0.1 -1,-0.1 -0.983 47.8-171.8-138.1 118.9 14.9 4.9 21.4 6 173 A C - 0 0 20 -2,-0.4 -1,-0.1 -5,-0.2 -3,-0.0 0.660 35.7-140.9 -80.2 -18.3 17.2 4.2 24.3 7 174 A G S S+ 0 0 33 1,-0.1 -1,-0.0 2,-0.0 -2,-0.0 0.472 83.7 72.1 75.2 5.2 14.5 1.9 25.7 8 175 A E + 0 0 125 5,-0.0 -1,-0.1 4,-0.0 5,-0.0 0.691 69.7 88.0-125.0 -30.7 15.2 3.1 29.2 9 176 A C S > S- 0 0 17 1,-0.1 4,-1.9 5,-0.0 5,-0.1 -0.193 87.9-101.3 -71.9 167.5 13.9 6.7 29.8 10 177 A E T 4 S+ 0 0 53 1,-0.2 4,-0.4 2,-0.2 -1,-0.1 0.834 123.3 52.2 -56.3 -36.1 10.4 7.7 30.9 11 178 A A T >4 S+ 0 0 5 1,-0.2 3,-1.3 2,-0.2 -1,-0.2 0.933 108.1 50.2 -66.7 -46.2 9.5 8.6 27.3 12 179 A C T 34 S+ 0 0 17 1,-0.2 -2,-0.2 32,-0.1 -1,-0.2 0.840 108.7 53.5 -60.9 -33.8 10.7 5.2 26.0 13 180 A R T 3< S+ 0 0 161 -4,-1.9 2,-0.4 2,-0.0 -1,-0.2 0.496 88.7 94.8 -82.1 -4.5 8.6 3.4 28.7 14 181 A R < + 0 0 125 -3,-1.3 -5,-0.0 -4,-0.4 3,-0.0 -0.728 42.6 174.3 -83.2 135.6 5.3 5.2 27.8 15 182 A T + 0 0 121 -2,-0.4 2,-0.4 2,-0.0 -1,-0.1 0.540 56.4 82.8-110.5 -11.8 3.0 3.3 25.4 16 183 A E S S- 0 0 158 26,-0.1 2,-0.3 2,-0.0 26,-0.0 -0.767 74.7-129.5-101.9 135.7 0.1 5.7 25.5 17 184 A D - 0 0 30 -2,-0.4 -2,-0.0 1,-0.1 22,-0.0 -0.619 13.6-139.3 -77.8 141.3 -0.3 8.9 23.5 18 185 A C - 0 0 43 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 0.881 20.1-147.2 -72.7 -38.2 -1.2 11.9 25.6 19 186 A G S S+ 0 0 11 -3,-0.0 -1,-0.1 2,-0.0 -2,-0.0 0.494 80.1 72.6 88.3 6.7 -3.7 13.3 23.0 20 187 A H S S+ 0 0 151 5,-0.0 2,-0.1 4,-0.0 -3,-0.0 0.483 71.6 90.0-132.6 -8.8 -3.0 17.0 23.9 21 188 A C S > S- 0 0 18 1,-0.1 4,-2.7 0, 0.0 5,-0.2 -0.331 89.6-100.2 -84.5 172.2 0.5 17.8 22.5 22 189 A D H > S+ 0 0 63 1,-0.2 4,-1.0 2,-0.2 5,-0.1 0.880 122.7 49.1 -63.0 -36.6 1.1 19.1 19.0 23 190 A F H > S+ 0 0 11 2,-0.2 4,-0.6 1,-0.2 15,-0.2 0.888 113.7 45.1 -70.9 -40.6 2.1 15.7 17.6 24 191 A C H >4 S+ 0 0 0 1,-0.2 3,-1.3 2,-0.2 6,-0.3 0.923 109.7 55.1 -66.9 -45.3 -0.9 14.0 19.1 25 192 A R H 3< S+ 0 0 145 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.767 104.1 56.6 -61.4 -25.0 -3.3 16.7 17.9 26 193 A D H 3< S+ 0 0 12 -4,-1.0 8,-3.3 -5,-0.2 -1,-0.3 0.759 89.2 99.0 -72.9 -27.4 -1.9 16.1 14.4 27 194 A M S X<>S- 0 0 46 -3,-1.3 5,-2.8 -4,-0.6 3,-1.3 -0.345 78.1-129.9 -69.0 140.8 -2.9 12.5 14.5 28 195 A K G > 5S+ 0 0 70 1,-0.2 3,-2.7 3,-0.2 -1,-0.1 0.886 106.3 62.0 -53.0 -43.4 -6.1 11.3 12.9 29 196 A K G 3 5S+ 0 0 136 1,-0.3 -1,-0.2 2,-0.1 -4,-0.1 0.674 108.3 44.0 -66.2 -14.0 -7.3 9.5 16.0 30 197 A F G < 5S- 0 0 88 -3,-1.3 -1,-0.3 -6,-0.3 -2,-0.2 0.134 129.7 -96.8-110.1 16.4 -7.3 12.8 17.8 31 198 A G T < 5S+ 0 0 73 -3,-2.7 -3,-0.2 1,-0.2 -2,-0.1 0.523 78.8 136.6 86.7 8.6 -9.0 14.6 14.8 32 199 A G < - 0 0 19 -5,-2.8 -1,-0.2 -8,-0.3 -6,-0.2 -0.279 65.5-111.2 -89.0 174.9 -5.9 16.0 13.2 33 200 A P - 0 0 108 0, 0.0 -6,-0.2 0, 0.0 -7,-0.1 0.411 40.8-130.4 -88.0 -0.1 -4.7 16.2 9.5 34 201 A N + 0 0 68 -8,-3.3 -7,-0.1 -9,-0.1 -8,-0.1 0.888 66.3 129.3 57.1 46.6 -1.8 13.8 9.9 35 202 A K + 0 0 73 -9,-0.2 -1,-0.1 -8,-0.0 -8,-0.1 0.586 68.6 44.5-107.4 -15.3 0.7 16.1 8.2 36 203 A I S S- 0 0 89 -13,-0.1 -13,-0.1 2,-0.1 -9,-0.0 0.848 80.8-165.7 -98.5 -48.3 3.5 16.0 10.8 37 204 A R + 0 0 166 1,-0.2 2,-0.3 -14,-0.2 -13,-0.1 0.896 33.7 131.4 69.1 47.2 3.5 12.3 11.5 38 205 A Q - 0 0 67 -15,-0.2 -1,-0.2 1,-0.0 3,-0.1 -0.864 58.4 -93.5-124.6 162.8 5.6 12.0 14.7 39 206 A K - 0 0 52 -2,-0.3 -16,-0.1 1,-0.2 -15,-0.1 -0.380 59.5 -72.8 -68.6 153.2 5.1 10.3 18.1 40 207 A C > - 0 0 0 -17,-0.2 3,-2.2 1,-0.1 4,-0.3 -0.072 43.1-118.9 -37.8 133.0 3.5 11.9 21.0 41 208 A R G > S+ 0 0 77 1,-0.3 3,-1.2 2,-0.2 -1,-0.1 0.840 115.5 57.0 -48.0 -37.8 5.9 14.6 22.6 42 209 A L G 3 S+ 0 0 87 1,-0.3 -1,-0.3 -26,-0.0 -28,-0.2 0.616 105.0 51.0 -73.3 -13.0 5.8 12.5 25.9 43 210 A R G < S+ 0 0 61 -3,-2.2 2,-0.7 2,-0.1 -1,-0.3 0.296 79.0 117.8-105.1 5.3 7.0 9.4 24.0 44 211 A Q S < S- 0 0 13 -3,-1.2 -33,-0.2 -4,-0.3 -32,-0.1 -0.672 76.7-110.3 -79.8 113.1 10.0 11.2 22.4 45 212 A C > - 0 0 0 -2,-0.7 4,-1.8 -41,-0.4 9,-0.1 -0.123 17.6-144.6 -49.8 127.2 13.2 9.5 23.7 46 213 A Q T 4 S+ 0 0 116 1,-0.2 -1,-0.1 2,-0.2 8,-0.1 0.752 96.9 34.6 -64.8 -28.1 15.1 11.8 26.1 47 214 A L T 4 S+ 0 0 123 -43,-0.1 -1,-0.2 1,-0.0 -42,-0.1 0.807 130.5 22.2 -95.3 -34.4 18.5 10.5 24.9 48 215 A R T 4 S+ 0 0 110 -44,-0.3 -2,-0.2 2,-0.1 -43,-0.1 0.538 87.2 105.4-121.4 -10.9 18.0 9.7 21.2 49 216 A A S < S- 0 0 5 -4,-1.8 5,-0.1 1,-0.1 -44,-0.0 -0.363 86.5 -85.1 -71.6 155.0 15.1 11.7 19.6 50 217 A R >> - 0 0 140 1,-0.1 3,-2.2 2,-0.1 4,-0.9 -0.360 48.2-116.4 -56.5 139.3 15.8 14.7 17.4 51 218 A E G >4 S+ 0 0 146 1,-0.3 3,-0.8 2,-0.2 -1,-0.1 0.841 111.5 55.6 -55.6 -40.1 16.2 17.6 19.9 52 219 A S G 34 S+ 0 0 94 1,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.532 102.3 59.1 -72.9 -7.5 13.2 19.6 18.7 53 220 A Y G <4 0 0 33 -3,-2.2 -1,-0.2 1,-0.1 -2,-0.2 0.752 360.0 360.0 -86.3 -29.4 10.9 16.6 19.3 54 221 A K << 0 0 88 -4,-0.9 -2,-0.2 -3,-0.8 -1,-0.1 0.800 360.0 360.0 -58.7 360.0 11.8 16.4 23.0