==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-MAR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 04-FEB-11 3QMC . COMPND 2 MOLECULE: CPG-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.LAM,C.XU,C.B.BIAN,J.KANIA,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMI . 53 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3854.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 34.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 169 A S > 0 0 106 0, 0.0 3,-0.8 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 164.6 -14.3 -2.2 17.0 2 170 A A T 3 + 0 0 88 1,-0.2 3,-0.0 3,-0.0 0, 0.0 0.869 360.0 22.6 -45.0 -48.3 -15.4 -5.4 15.2 3 171 A R T 3 S+ 0 0 123 1,-0.1 41,-0.5 45,-0.0 2,-0.4 0.243 117.3 73.6-110.1 10.7 -13.3 -7.6 17.6 4 172 A M < - 0 0 60 -3,-0.8 -1,-0.1 43,-0.1 39,-0.0 -0.976 45.9-174.5-133.5 120.9 -13.1 -5.2 20.6 5 173 A C - 0 0 26 -2,-0.4 -1,-0.1 -3,-0.0 -3,-0.0 0.678 34.9-145.1 -77.7 -19.7 -15.9 -4.3 23.0 6 174 A G S S+ 0 0 46 1,-0.1 -2,-0.0 2,-0.0 -1,-0.0 0.563 80.7 75.8 66.9 12.0 -13.4 -1.8 24.5 7 175 A E + 0 0 158 5,-0.0 2,-0.2 0, 0.0 -1,-0.1 0.364 69.7 85.6-136.2 -0.3 -14.8 -2.4 28.0 8 176 A C S > S- 0 0 15 1,-0.1 4,-1.8 5,-0.0 5,-0.1 -0.529 88.2 -99.9-100.3 174.9 -13.6 -5.8 29.3 9 177 A E H > S+ 0 0 38 1,-0.2 4,-1.0 2,-0.2 3,-0.1 0.912 124.4 50.5 -57.2 -45.2 -10.3 -6.6 31.2 10 178 A A H 4 S+ 0 0 4 1,-0.2 3,-0.4 2,-0.2 -1,-0.2 0.890 109.6 50.4 -62.5 -44.5 -8.8 -7.9 28.0 11 179 A C H 4 S+ 0 0 19 1,-0.2 -1,-0.2 32,-0.1 -2,-0.2 0.825 110.9 49.4 -61.7 -33.1 -9.7 -4.8 26.1 12 180 A R H < S+ 0 0 160 -4,-1.8 -1,-0.2 -3,-0.1 -2,-0.2 0.678 86.7 107.3 -82.9 -15.3 -8.2 -2.5 28.7 13 181 A R < + 0 0 120 -4,-1.0 3,-0.0 -3,-0.4 -5,-0.0 -0.365 38.3 176.0 -67.6 135.3 -4.9 -4.4 28.9 14 182 A T + 0 0 121 -2,-0.1 2,-0.5 1,-0.1 -1,-0.1 0.651 57.6 77.3-107.2 -22.1 -1.9 -2.6 27.4 15 183 A E S S- 0 0 158 26,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.780 73.3-134.5-101.8 125.5 0.9 -5.1 28.2 16 184 A D - 0 0 34 -2,-0.5 -2,-0.0 1,-0.1 22,-0.0 -0.524 16.9-132.4 -70.5 144.3 1.5 -8.4 26.3 17 185 A C - 0 0 40 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.797 22.9-145.4 -72.8 -30.1 2.1 -11.3 28.7 18 186 A G S S+ 0 0 16 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 0.416 80.9 70.6 83.9 0.5 5.2 -12.5 26.7 19 187 A H + 0 0 152 4,-0.0 -1,-0.1 5,-0.0 -3,-0.0 0.625 69.6 92.2-125.6 -21.9 4.5 -16.2 27.4 20 188 A C S > S- 0 0 21 1,-0.1 4,-2.6 4,-0.0 5,-0.2 -0.225 88.1-101.2 -74.2 167.5 1.4 -17.3 25.4 21 189 A D H > S+ 0 0 64 1,-0.2 4,-1.3 2,-0.2 14,-0.1 0.902 122.8 50.7 -56.1 -43.2 1.6 -18.8 21.8 22 190 A F H > S+ 0 0 8 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.888 111.6 46.4 -63.4 -42.8 0.6 -15.5 20.2 23 191 A C H >4 S+ 0 0 0 1,-0.2 3,-1.7 2,-0.2 6,-0.3 0.948 109.5 53.8 -65.4 -48.1 3.2 -13.4 22.2 24 192 A R H 3< S+ 0 0 149 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.778 103.3 58.7 -59.3 -28.1 6.0 -15.9 21.4 25 193 A D H 3< S+ 0 0 10 -4,-1.3 8,-2.9 -5,-0.2 -1,-0.3 0.739 88.9 100.8 -67.8 -25.0 5.1 -15.6 17.7 26 194 A M S X<>S- 0 0 31 -3,-1.7 5,-3.0 -4,-0.6 3,-1.4 -0.355 76.8-132.0 -70.0 143.3 5.8 -11.8 17.9 27 195 A K G > 5S+ 0 0 74 1,-0.2 3,-1.9 3,-0.2 -1,-0.1 0.848 108.0 63.9 -53.5 -39.3 9.1 -10.2 16.7 28 196 A K G 3 5S+ 0 0 143 1,-0.3 -1,-0.2 2,-0.1 -4,-0.1 0.682 109.1 40.6 -64.9 -15.5 9.3 -8.3 20.0 29 197 A F G < 5S- 0 0 83 -3,-1.4 -1,-0.3 -6,-0.3 -2,-0.2 0.171 127.5 -96.6-115.9 14.6 9.6 -11.7 21.7 30 198 A G T < 5S+ 0 0 73 -3,-1.9 -3,-0.2 1,-0.2 -2,-0.1 0.590 78.8 137.7 87.6 13.0 12.0 -13.2 19.2 31 199 A G < - 0 0 19 -5,-3.0 -1,-0.2 -8,-0.3 -6,-0.2 -0.328 64.3-112.4 -90.8 172.8 9.3 -15.1 17.2 32 200 A P - 0 0 109 0, 0.0 -6,-0.2 0, 0.0 -7,-0.1 0.517 39.8-125.1 -82.7 -5.2 8.8 -15.5 13.4 33 201 A N + 0 0 77 -8,-2.9 -7,-0.1 -9,-0.1 -8,-0.1 0.932 69.4 131.0 57.7 47.9 5.6 -13.4 13.0 34 202 A K S S+ 0 0 73 -9,-0.2 -8,-0.1 -8,-0.0 -1,-0.1 0.704 70.7 39.4-101.6 -25.6 3.8 -16.4 11.4 35 203 A I S S- 0 0 89 -13,-0.1 -13,-0.1 -14,-0.1 -9,-0.0 0.859 81.6-166.0 -90.6 -47.8 0.6 -16.4 13.5 36 204 A R + 0 0 169 1,-0.2 2,-0.3 -14,-0.2 -14,-0.1 0.876 34.4 132.7 64.4 45.2 0.1 -12.6 13.8 37 205 A Q - 0 0 65 -15,-0.2 -1,-0.2 1,-0.0 3,-0.1 -0.876 58.5 -95.3-122.2 158.6 -2.5 -12.4 16.6 38 206 A K - 0 0 55 -2,-0.3 -16,-0.1 1,-0.2 -15,-0.1 -0.344 57.5 -77.3 -63.4 149.1 -2.9 -10.3 19.8 39 207 A C > - 0 0 0 -17,-0.2 3,-1.9 1,-0.1 4,-0.3 -0.127 42.2-119.2 -38.9 137.0 -1.7 -11.7 23.1 40 208 A R G > S+ 0 0 67 1,-0.3 3,-1.0 2,-0.2 -1,-0.1 0.807 115.2 56.5 -57.4 -32.9 -4.2 -14.2 24.6 41 209 A L G 3 S+ 0 0 86 1,-0.2 -1,-0.3 -26,-0.0 -28,-0.2 0.671 106.9 51.0 -72.8 -15.8 -4.7 -11.9 27.6 42 210 A R G < S+ 0 0 67 -3,-1.9 2,-0.6 2,-0.1 -1,-0.2 0.314 78.8 115.5-103.2 7.3 -5.7 -9.1 25.3 43 211 A Q S < S- 0 0 12 -3,-1.0 -33,-0.2 -4,-0.3 -32,-0.1 -0.695 80.0-107.2 -80.8 116.0 -8.3 -11.1 23.2 44 212 A C > - 0 0 0 -2,-0.6 4,-1.7 -41,-0.5 8,-0.1 -0.185 20.2-144.5 -48.4 127.2 -11.7 -9.4 23.9 45 213 A Q T 4 S+ 0 0 112 1,-0.2 -1,-0.2 2,-0.2 8,-0.1 0.757 96.9 35.7 -66.8 -28.7 -13.7 -11.7 26.2 46 214 A L T 4 S+ 0 0 133 -43,-0.1 -1,-0.2 1,-0.0 -42,-0.1 0.895 130.0 23.1 -86.8 -48.9 -17.0 -10.7 24.4 47 215 A R T 4 S+ 0 0 121 -44,-0.2 -2,-0.2 2,-0.1 -43,-0.1 0.632 90.5 102.5-104.8 -18.8 -16.0 -10.3 20.7 48 216 A A S < S- 0 0 9 -4,-1.7 5,-0.1 1,-0.1 -44,-0.0 -0.244 86.1 -82.2 -68.2 156.1 -12.8 -12.3 19.9 49 217 A R >> - 0 0 132 1,-0.1 3,-2.7 2,-0.1 4,-0.7 -0.358 44.4-122.3 -51.8 132.1 -12.7 -15.7 18.1 50 218 A E G >4 S+ 0 0 85 1,-0.3 3,-1.0 2,-0.2 -1,-0.1 0.868 110.8 54.0 -53.3 -42.4 -13.5 -18.3 20.7 51 219 A S G 34 S+ 0 0 87 1,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.381 98.1 64.8 -73.8 1.4 -10.3 -20.2 20.1 52 220 A Y G <4 0 0 35 -3,-2.7 -1,-0.2 -8,-0.1 -2,-0.2 0.670 360.0 360.0 -93.3 -21.3 -8.2 -17.0 20.6 53 221 A K << 0 0 112 -3,-1.0 -2,-0.2 -4,-0.7 -10,-0.1 0.880 360.0 360.0 -74.9 360.0 -9.1 -16.7 24.2