==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-MAR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 04-FEB-11 3QMD . COMPND 2 MOLECULE: CPG-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.LAM,C.XU,C.B.BIAN,J.KANIA,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMI . 53 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3809.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 35.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 169 A S 0 0 106 0, 0.0 3,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 159.4 -13.9 2.2 -16.4 2 170 A A + 0 0 88 1,-0.2 3,-0.0 3,-0.0 0, 0.0 0.825 360.0 33.9 -57.4 -35.6 -15.7 5.3 -15.1 3 171 A R S S+ 0 0 101 1,-0.1 2,-0.4 45,-0.0 41,-0.4 0.326 111.3 71.3-106.7 6.7 -13.4 7.3 -17.5 4 172 A M - 0 0 69 -3,-0.4 -1,-0.1 43,-0.1 39,-0.0 -0.967 46.0-174.9-129.8 120.9 -13.1 4.8 -20.4 5 173 A C - 0 0 24 -2,-0.4 -1,-0.1 1,-0.0 -3,-0.0 0.709 34.0-145.2 -76.8 -21.6 -15.9 3.9 -22.9 6 174 A G S S+ 0 0 47 1,-0.1 -1,-0.0 2,-0.0 -2,-0.0 0.509 80.8 74.1 70.9 8.2 -13.5 1.3 -24.3 7 175 A E S S+ 0 0 154 5,-0.0 2,-0.2 0, 0.0 -1,-0.1 0.419 70.7 85.5-133.8 -2.6 -14.9 1.9 -27.8 8 176 A C S > S- 0 0 16 1,-0.1 4,-1.9 5,-0.0 5,-0.2 -0.483 87.9 -98.3 -97.7 176.4 -13.7 5.2 -29.2 9 177 A E H > S+ 0 0 50 1,-0.2 4,-1.1 2,-0.2 35,-0.1 0.912 123.7 50.7 -54.6 -47.8 -10.4 6.1 -31.0 10 178 A A H >4 S+ 0 0 4 1,-0.2 3,-0.5 2,-0.2 -1,-0.2 0.903 110.1 49.2 -59.8 -46.7 -8.8 7.5 -27.8 11 179 A C H 34 S+ 0 0 19 1,-0.2 -1,-0.2 32,-0.1 -2,-0.2 0.827 110.6 49.8 -63.3 -35.1 -9.7 4.3 -25.9 12 180 A R H 3< S+ 0 0 161 -4,-1.9 -1,-0.2 2,-0.0 -2,-0.2 0.660 87.2 107.7 -79.3 -16.0 -8.3 2.0 -28.6 13 181 A R << + 0 0 88 -4,-1.1 3,-0.0 -3,-0.5 -5,-0.0 -0.415 39.9 176.4 -66.3 130.4 -5.0 3.9 -28.8 14 182 A T + 0 0 117 -2,-0.2 2,-0.5 1,-0.1 -1,-0.1 0.549 56.7 76.4-107.2 -12.8 -2.0 2.1 -27.2 15 183 A E S S- 0 0 138 26,-0.1 2,-0.1 2,-0.0 -1,-0.1 -0.887 74.4-132.6-111.3 122.1 0.9 4.5 -28.0 16 184 A D - 0 0 36 -2,-0.5 -2,-0.0 1,-0.1 22,-0.0 -0.464 18.5-131.2 -65.5 141.4 1.5 7.8 -26.1 17 185 A C - 0 0 37 -2,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.766 23.0-147.3 -68.2 -26.6 2.0 10.7 -28.5 18 186 A G S S+ 0 0 16 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 0.387 80.0 73.2 78.5 -2.3 5.1 11.8 -26.6 19 187 A H + 0 0 156 4,-0.0 -1,-0.1 5,-0.0 2,-0.0 0.614 69.6 88.9-121.1 -19.1 4.4 15.4 -27.4 20 188 A C S > S- 0 0 21 1,-0.1 4,-2.9 4,-0.0 5,-0.2 -0.222 87.9-100.2 -80.0 173.6 1.5 16.7 -25.4 21 189 A D H > S+ 0 0 50 1,-0.2 4,-1.3 2,-0.2 14,-0.1 0.906 123.4 49.7 -60.5 -42.9 1.7 18.3 -21.9 22 190 A F H > S+ 0 0 9 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.886 113.7 45.7 -64.1 -40.8 0.6 15.1 -20.2 23 191 A C H >4 S+ 0 0 0 1,-0.2 3,-1.4 2,-0.2 6,-0.3 0.924 109.1 54.1 -67.1 -45.2 3.2 13.0 -22.1 24 192 A R H 3< S+ 0 0 151 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.776 104.6 57.5 -63.2 -24.3 6.0 15.5 -21.5 25 193 A D H 3< S+ 0 0 7 -4,-1.3 8,-2.8 -5,-0.2 -1,-0.3 0.736 88.4 103.2 -71.4 -24.3 5.2 15.2 -17.8 26 194 A M S X<>S- 0 0 29 -3,-1.4 5,-2.8 -4,-0.6 3,-1.6 -0.331 75.6-131.3 -71.1 142.4 5.8 11.4 -17.9 27 195 A K G > 5S+ 0 0 75 1,-0.3 3,-2.3 3,-0.2 -1,-0.1 0.887 108.8 60.9 -50.8 -43.9 9.0 9.8 -16.5 28 196 A K G 3 5S+ 0 0 143 1,-0.3 -1,-0.3 2,-0.1 -4,-0.1 0.677 108.4 43.9 -67.0 -12.3 9.3 7.8 -19.7 29 197 A F G < 5S- 0 0 86 -3,-1.6 -1,-0.3 -6,-0.3 -2,-0.2 0.119 126.7 -97.1-113.6 18.7 9.6 11.1 -21.6 30 198 A G T < 5S+ 0 0 73 -3,-2.3 -3,-0.2 1,-0.2 -2,-0.1 0.580 78.3 141.3 83.3 11.8 12.0 12.8 -19.1 31 199 A G < - 0 0 18 -5,-2.8 -1,-0.2 -8,-0.3 -6,-0.2 -0.301 63.3-114.6 -89.6 170.8 9.3 14.6 -17.2 32 200 A P - 0 0 107 0, 0.0 -6,-0.1 0, 0.0 -7,-0.1 0.420 39.0-129.5 -86.7 1.5 8.9 15.3 -13.4 33 201 A N + 0 0 77 -8,-2.8 -7,-0.1 -9,-0.1 -8,-0.1 0.893 67.1 130.6 52.6 45.0 5.7 13.3 -13.1 34 202 A K S S+ 0 0 79 -9,-0.2 -1,-0.1 -8,-0.0 -8,-0.1 0.642 71.1 40.8 -98.5 -17.9 3.9 16.2 -11.3 35 203 A I S S- 0 0 83 -13,-0.1 -13,-0.1 -14,-0.1 -9,-0.0 0.849 80.3-167.6-100.1 -46.5 0.7 16.1 -13.4 36 204 A R + 0 0 173 1,-0.2 2,-0.3 -14,-0.2 -14,-0.1 0.880 32.5 131.4 60.9 51.0 0.1 12.3 -13.8 37 205 A Q - 0 0 68 -15,-0.2 -1,-0.2 1,-0.0 3,-0.1 -0.915 58.7 -95.4-124.7 156.9 -2.6 12.1 -16.5 38 206 A K - 0 0 58 -2,-0.3 -16,-0.1 1,-0.2 -15,-0.1 -0.270 59.1 -71.9 -61.3 153.9 -2.8 9.9 -19.6 39 207 A C > - 0 0 0 -17,-0.2 3,-1.9 1,-0.1 4,-0.4 -0.139 42.5-120.5 -40.8 134.0 -1.8 11.2 -23.1 40 208 A R G > S+ 0 0 67 1,-0.3 3,-1.1 2,-0.2 -1,-0.1 0.855 115.2 55.8 -48.6 -39.5 -4.2 13.8 -24.5 41 209 A L G 3 S+ 0 0 92 1,-0.2 -1,-0.3 -26,-0.0 -28,-0.2 0.646 106.6 49.7 -71.2 -18.5 -4.7 11.5 -27.5 42 210 A R G < S+ 0 0 61 -3,-1.9 2,-0.6 2,-0.1 -1,-0.2 0.297 79.3 118.6-102.4 8.1 -5.8 8.6 -25.2 43 211 A Q S < S- 0 0 12 -3,-1.1 -33,-0.2 -4,-0.4 -32,-0.1 -0.631 79.5-106.4 -76.7 117.5 -8.3 10.7 -23.2 44 212 A C > - 0 0 0 -2,-0.6 4,-1.7 -41,-0.4 -1,-0.1 -0.193 21.6-145.3 -50.3 124.7 -11.7 9.0 -23.7 45 213 A Q T 4 S+ 0 0 108 1,-0.2 -1,-0.2 2,-0.1 8,-0.1 0.772 96.9 34.9 -64.0 -27.8 -13.8 11.2 -26.1 46 214 A L T 4 S+ 0 0 137 -43,-0.1 -1,-0.2 1,-0.0 -42,-0.1 0.902 130.7 22.7 -86.6 -50.5 -17.0 10.3 -24.2 47 215 A R T 4 S+ 0 0 119 -44,-0.2 -2,-0.1 2,-0.1 -43,-0.1 0.600 88.9 105.8-105.3 -16.5 -16.0 9.9 -20.6 48 216 A A S < S- 0 0 8 -4,-1.7 5,-0.1 1,-0.1 -44,-0.0 -0.316 85.4 -87.1 -65.7 148.4 -12.8 11.9 -19.8 49 217 A R >> - 0 0 137 1,-0.1 3,-2.8 2,-0.1 4,-0.6 -0.351 42.3-121.6 -51.0 130.6 -12.9 15.2 -17.9 50 218 A E G >4 S+ 0 0 85 1,-0.3 3,-0.8 2,-0.2 -1,-0.1 0.826 111.1 58.9 -53.9 -35.7 -13.5 17.8 -20.6 51 219 A S G 34 S+ 0 0 88 1,-0.2 -1,-0.3 2,-0.1 -2,-0.1 0.540 98.1 61.6 -69.9 -8.5 -10.3 19.7 -19.6 52 220 A Y G <4 0 0 49 -3,-2.8 -1,-0.2 1,-0.1 -2,-0.2 0.681 360.0 360.0 -92.0 -20.7 -8.2 16.5 -20.4 53 221 A K << 0 0 112 -3,-0.8 -2,-0.1 -4,-0.6 -1,-0.1 0.765 360.0 360.0 -72.9 360.0 -9.0 16.1 -24.1