==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-MAR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 04-FEB-11 3QMI . COMPND 2 MOLECULE: CPG-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.XU,C.BIAN,F.MACKENZIE,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3752.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 34.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 166 A A 0 0 106 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -62.3 -15.7 -5.1 16.0 2 167 A R + 0 0 125 1,-0.1 41,-0.5 45,-0.0 2,-0.4 0.143 360.0 66.9-102.8 11.7 -13.4 -7.6 17.5 3 168 A M - 0 0 92 43,-0.1 -1,-0.1 1,-0.1 39,-0.0 -0.953 52.9-174.0-133.8 123.9 -13.2 -5.2 20.5 4 169 A C - 0 0 25 -2,-0.4 -1,-0.1 -3,-0.1 0, 0.0 0.752 37.3-142.8 -82.8 -22.4 -15.9 -4.2 22.9 5 170 A G S S+ 0 0 48 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 0.522 81.1 66.7 78.1 4.0 -13.5 -1.7 24.3 6 171 A E S S+ 0 0 150 5,-0.0 2,-0.2 0, 0.0 -1,-0.1 0.273 71.0 94.4-141.1 14.4 -14.6 -2.1 27.9 7 172 A C S > S- 0 0 13 1,-0.1 4,-1.8 5,-0.0 5,-0.2 -0.557 88.2 -99.5 -93.5 173.1 -13.7 -5.6 29.2 8 173 A E H > S+ 0 0 39 2,-0.2 4,-1.2 -2,-0.2 3,-0.1 0.922 123.7 52.0 -55.6 -43.0 -10.5 -6.4 31.0 9 174 A A H >4 S+ 0 0 3 1,-0.2 3,-0.6 2,-0.2 -1,-0.2 0.932 109.2 49.1 -65.0 -43.0 -8.8 -7.8 27.8 10 175 A C H 34 S+ 0 0 20 1,-0.2 -1,-0.2 32,-0.1 -2,-0.2 0.833 110.3 51.0 -64.2 -32.8 -9.7 -4.6 25.9 11 176 A R H 3< S+ 0 0 153 -4,-1.8 -1,-0.2 -3,-0.1 -2,-0.2 0.735 85.9 108.2 -82.1 -13.5 -8.3 -2.3 28.6 12 177 A R << + 0 0 116 -4,-1.2 -5,-0.0 -3,-0.6 3,-0.0 -0.311 40.9 179.8 -64.6 138.6 -4.9 -4.2 28.8 13 178 A T + 0 0 115 1,-0.1 2,-0.5 -2,-0.0 -1,-0.1 0.577 58.1 74.5-110.9 -11.6 -1.9 -2.4 27.4 14 179 A E S S- 0 0 156 26,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.867 73.5-132.4-116.4 123.8 0.9 -4.9 28.1 15 180 A D - 0 0 36 -2,-0.5 -2,-0.0 1,-0.1 22,-0.0 -0.590 20.5-130.8 -65.6 143.5 1.4 -8.1 26.2 16 181 A C - 0 0 41 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.802 24.0-145.6 -73.5 -28.2 2.0 -11.0 28.6 17 182 A G S S+ 0 0 16 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 0.352 80.2 67.8 86.6 -1.5 5.1 -12.2 26.8 18 183 A H + 0 0 159 4,-0.1 2,-0.1 5,-0.0 -1,-0.1 0.520 69.0 93.6-131.6 -17.2 4.5 -15.8 27.4 19 184 A C S > S- 0 0 22 1,-0.1 4,-2.7 4,-0.0 5,-0.2 -0.353 87.6-100.4 -78.3 168.6 1.4 -17.1 25.5 20 185 A D H > S+ 0 0 84 1,-0.2 4,-1.3 2,-0.2 14,-0.1 0.889 123.0 51.8 -56.6 -40.7 1.7 -18.7 22.1 21 186 A F H > S+ 0 0 10 2,-0.2 4,-0.6 1,-0.2 14,-0.2 0.900 112.4 45.3 -67.7 -38.4 0.6 -15.5 20.4 22 187 A C H >4 S+ 0 0 0 1,-0.2 3,-1.8 2,-0.2 6,-0.3 0.939 107.4 56.8 -66.4 -47.8 3.2 -13.4 22.2 23 188 A R H 3< S+ 0 0 90 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.791 103.7 57.4 -59.5 -22.4 6.0 -15.9 21.6 24 189 A D H 3< S+ 0 0 8 -4,-1.3 8,-2.7 -5,-0.2 -1,-0.3 0.747 86.4 99.6 -71.2 -29.8 5.2 -15.6 17.9 25 190 A M S X<>S- 0 0 31 -3,-1.8 5,-2.7 -4,-0.6 3,-1.4 -0.338 77.4-130.3 -66.7 147.7 5.8 -11.8 17.9 26 191 A K G > 5S+ 0 0 78 1,-0.3 3,-1.8 3,-0.2 -1,-0.1 0.839 107.2 66.0 -60.5 -30.1 9.1 -10.4 16.6 27 192 A K G 3 5S+ 0 0 142 1,-0.3 -1,-0.3 2,-0.1 -4,-0.1 0.695 107.3 40.7 -68.2 -20.6 9.3 -8.3 19.8 28 193 A F G < 5S- 0 0 86 -3,-1.4 -1,-0.3 -6,-0.3 -2,-0.2 0.124 128.0 -95.4-112.1 16.0 9.6 -11.6 21.8 29 194 A G T < 5S+ 0 0 72 -3,-1.8 -3,-0.2 1,-0.2 -2,-0.1 0.518 79.2 137.0 93.8 8.9 11.9 -13.3 19.3 30 195 A G < - 0 0 18 -5,-2.7 -1,-0.2 -8,-0.3 -6,-0.2 -0.261 64.2-110.8 -91.4 175.9 9.3 -15.2 17.3 31 196 A P - 0 0 105 0, 0.0 -6,-0.1 0, 0.0 -7,-0.1 0.487 39.1-126.7 -87.4 -2.7 8.8 -15.8 13.6 32 197 A N + 0 0 73 -8,-2.7 -7,-0.1 -9,-0.1 -8,-0.1 0.923 69.3 130.6 55.5 46.8 5.7 -13.7 13.1 33 198 A K S S+ 0 0 73 -9,-0.2 -1,-0.1 -8,-0.0 -8,-0.1 0.585 72.2 38.5-102.3 -10.0 3.9 -16.7 11.5 34 199 A I S S- 0 0 85 -13,-0.1 -13,-0.1 -10,-0.1 -9,-0.0 0.864 77.4-170.9-110.4 -54.7 0.8 -16.5 13.6 35 200 A R + 0 0 176 -14,-0.2 2,-0.3 1,-0.2 -14,-0.1 0.874 32.0 131.0 66.6 44.7 0.2 -12.7 14.0 36 201 A Q - 0 0 67 -15,-0.2 -1,-0.2 15,-0.0 2,-0.1 -0.857 60.1 -91.4-117.0 161.3 -2.6 -12.5 16.5 37 202 A K - 0 0 61 -2,-0.3 -16,-0.1 1,-0.2 -15,-0.1 -0.413 59.4 -74.3 -56.9 148.6 -2.9 -10.3 19.7 38 203 A C > - 0 0 0 -17,-0.2 3,-2.3 1,-0.1 4,-0.4 -0.013 43.2-118.9 -33.6 135.5 -1.8 -11.5 23.1 39 204 A R G > S+ 0 0 70 1,-0.3 3,-1.2 2,-0.2 -1,-0.1 0.835 115.2 54.5 -53.4 -35.5 -4.1 -14.1 24.5 40 205 A L G 3 S+ 0 0 85 1,-0.3 -1,-0.3 -26,-0.0 -28,-0.2 0.587 106.5 52.0 -81.6 -8.2 -4.8 -11.8 27.5 41 206 A R G < S+ 0 0 64 -3,-2.3 2,-0.6 2,-0.1 -1,-0.3 0.326 77.4 117.3-109.0 13.2 -5.8 -9.0 25.2 42 207 A Q S < S- 0 0 13 -3,-1.2 -33,-0.2 -4,-0.4 -32,-0.1 -0.642 80.0-105.7 -82.4 115.8 -8.3 -11.0 23.2 43 208 A C > - 0 0 0 -2,-0.6 4,-1.8 -41,-0.5 -1,-0.1 -0.160 22.1-143.4 -47.2 127.1 -11.7 -9.3 23.7 44 209 A Q T 4 S+ 0 0 106 1,-0.2 -1,-0.2 2,-0.2 -41,-0.1 0.714 96.5 33.1 -66.0 -27.3 -13.7 -11.5 26.1 45 210 A L T 4 S+ 0 0 125 -43,-0.1 -1,-0.2 3,-0.0 -42,-0.1 0.863 129.5 26.2 -88.8 -51.5 -17.0 -10.7 24.2 46 211 A R T 4 S+ 0 0 122 -44,-0.2 -2,-0.2 2,-0.1 -43,-0.1 0.583 89.8 104.3 -99.6 -15.7 -16.0 -10.2 20.5 47 212 A A S < S- 0 0 8 -4,-1.8 5,-0.1 1,-0.1 -44,-0.0 -0.310 85.3 -86.5 -74.5 151.8 -12.9 -12.2 19.8 48 213 A R >> - 0 0 131 1,-0.1 3,-1.9 2,-0.1 4,-0.7 -0.339 41.8-122.8 -51.9 137.3 -12.9 -15.5 17.9 49 214 A E G >4 S+ 0 0 85 1,-0.3 3,-1.1 2,-0.2 -1,-0.1 0.894 110.2 56.8 -60.0 -35.0 -13.6 -18.2 20.6 50 215 A S G 34 S+ 0 0 86 1,-0.3 -1,-0.3 2,-0.1 -2,-0.1 0.598 96.8 63.9 -73.0 -11.7 -10.3 -20.0 19.7 51 216 A Y G <4 0 0 49 -3,-1.9 -1,-0.3 -13,-0.0 -2,-0.2 0.667 360.0 360.0 -87.1 -21.5 -8.2 -16.9 20.4 52 217 A K << 0 0 114 -3,-1.1 -2,-0.1 -4,-0.7 -3,-0.1 0.718 360.0 360.0 -86.3 360.0 -9.1 -16.8 24.0