==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 22-AUG-07 2R1C . COMPND 2 MOLECULE: RIBOSOME-BINDING FACTOR A; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR P.P.DATTA,D.N.WILSON,M.KAWAZOE,N.K.SWAMI,T.KAMINISHI,M.R.SHA . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6808.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 70.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 29.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A K > 0 0 200 0, 0.0 3,-1.1 0, 0.0 2,-1.0 0.000 360.0 360.0 360.0 5.5 -64.2 10.2 15.7 2 6 A A T 3 + 0 0 16 1,-0.3 32,-0.5 2,-0.1 3,-0.1 -0.021 360.0 97.8 -77.5 36.3 -63.9 12.0 12.4 3 7 A H T > + 0 0 123 -2,-1.0 3,-2.2 1,-0.2 -1,-0.3 0.380 53.2 88.0-104.6 -4.0 -61.0 13.9 13.8 4 8 A L T <> + 0 0 59 -3,-1.1 4,-2.6 1,-0.3 5,-0.3 0.572 59.8 93.0 -73.9 -2.6 -58.6 11.5 12.1 5 9 A E H 3> S+ 0 0 70 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.902 79.8 62.2 -43.1 -32.3 -59.2 14.2 9.5 6 10 A A H <> S+ 0 0 33 -3,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.931 100.7 46.6 -63.3 -47.6 -56.0 15.1 11.4 7 11 A Q H > S+ 0 0 79 2,-0.2 4,-2.8 1,-0.2 5,-0.3 0.911 113.0 49.4 -65.3 -37.5 -54.2 11.9 10.3 8 12 A L H X S+ 0 0 4 -4,-2.6 4,-3.0 2,-0.2 5,-0.3 0.890 109.1 52.8 -68.6 -33.6 -55.3 12.5 6.7 9 13 A K H X S+ 0 0 94 -4,-2.3 4,-1.5 -5,-0.3 -2,-0.2 0.937 113.1 44.2 -67.7 -40.4 -54.1 16.1 6.9 10 14 A R H X S+ 0 0 168 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.966 121.6 37.7 -66.0 -51.1 -50.6 14.9 8.1 11 15 A A H X S+ 0 0 6 -4,-2.8 4,-1.7 1,-0.2 -2,-0.2 0.822 114.9 51.6 -75.4 -36.2 -50.3 12.0 5.6 12 16 A L H X S+ 0 0 0 -4,-3.0 4,-0.9 -5,-0.3 -1,-0.2 0.863 104.5 59.6 -73.9 -28.3 -51.9 13.7 2.5 13 17 A A H >< S+ 0 0 41 -4,-1.5 3,-0.6 -5,-0.3 -2,-0.2 0.941 107.5 45.0 -61.4 -45.4 -49.5 16.7 3.0 14 18 A E H 3< S+ 0 0 107 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.891 108.3 56.0 -66.9 -41.3 -46.5 14.4 2.6 15 19 A E H >< S+ 0 0 21 -4,-1.7 3,-0.9 3,-0.1 4,-0.3 0.677 82.9 109.3 -65.9 -21.8 -47.9 12.6 -0.4 16 20 A I T << + 0 0 14 -4,-0.9 13,-0.0 -3,-0.6 10,-0.0 -0.433 69.1 43.2 -55.6 129.3 -48.3 16.0 -2.1 17 21 A Q T 3 + 0 0 58 -2,-0.2 -1,-0.3 8,-0.1 -2,-0.0 0.956 65.3 101.4 58.8 59.4 -45.8 16.2 -4.9 18 22 A A S < S+ 0 0 82 -3,-0.9 2,-1.0 2,-0.0 -2,-0.2 -0.028 82.1 80.1 -4.4 -55.0 -46.3 13.2 -5.9 19 23 A L + 0 0 22 -4,-0.3 2,-0.8 8,-0.1 8,-0.2 -0.579 62.2 173.6 -73.1 104.3 -47.7 16.3 -7.7 20 24 A E + 0 0 149 -2,-1.0 6,-0.1 6,-0.1 -1,-0.0 -0.832 17.4 143.4-119.1 89.5 -44.9 17.8 -9.8 21 25 A D >> - 0 0 26 -2,-0.8 4,-2.7 4,-0.3 3,-1.9 -0.872 35.6-159.6-130.2 108.4 -46.4 20.7 -11.8 22 26 A P T 34 S+ 0 0 104 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.705 90.8 60.4 -60.8 -26.8 -44.2 23.8 -12.4 23 27 A R T 34 S+ 0 0 185 1,-0.1 29,-0.0 2,-0.1 0, 0.0 0.647 119.5 25.9 -76.7 -15.4 -47.2 26.0 -13.1 24 28 A L T <4 S- 0 0 1 -3,-1.9 25,-0.8 1,-0.1 24,-0.6 0.622 92.5-167.1-113.7 -24.6 -48.8 25.4 -9.7 25 29 A F < + 0 0 103 -4,-2.7 -4,-0.3 23,-0.1 -1,-0.1 -0.332 54.3 10.5 70.0-152.0 -45.6 24.6 -7.6 26 30 A L - 0 0 80 -4,-0.1 2,-0.6 1,-0.1 22,-0.6 -0.315 69.7-140.7 -59.1 137.5 -46.0 23.1 -4.1 27 31 A L E -A 47 0A 4 -8,-0.2 2,-0.3 20,-0.1 20,-0.2 -0.869 20.7-163.4-105.1 114.5 -49.5 21.9 -3.2 28 32 A T E -A 46 0A 50 18,-3.7 18,-1.4 -2,-0.6 2,-0.6 -0.714 15.3-134.8 -98.9 151.9 -50.2 22.8 0.5 29 33 A V E +A 45 0A 22 16,-0.3 16,-0.2 -2,-0.3 3,-0.1 -0.948 21.2 178.3-110.9 105.4 -53.1 21.3 2.6 30 34 A E E - 0 0 84 14,-3.0 2,-0.3 -2,-0.6 15,-0.2 0.791 64.6 -21.2 -73.7 -35.2 -54.9 24.0 4.5 31 35 A A E -A 44 0A 35 13,-1.0 13,-2.5 -22,-0.0 2,-0.4 -0.968 50.0-142.9-171.6 158.3 -57.4 21.7 6.2 32 36 A V E -A 43 0A 9 -2,-0.3 2,-0.4 11,-0.2 11,-0.2 -0.997 10.6-168.2-134.6 133.9 -59.3 18.4 6.0 33 37 A R E -A 42 0A 162 9,-2.1 9,-2.9 -2,-0.4 2,-0.4 -0.961 5.7-167.5-121.5 135.4 -62.9 17.6 6.9 34 38 A L E -A 41 0A 24 -32,-0.5 7,-0.2 -2,-0.4 -29,-0.1 -0.990 24.0-114.6-125.7 134.1 -64.2 14.1 7.3 35 39 A S > - 0 0 34 5,-2.5 3,-2.5 -2,-0.4 -30,-0.0 -0.214 31.3-106.3 -61.8 158.0 -67.9 13.1 7.5 36 40 A K T 3 S+ 0 0 184 1,-0.3 -1,-0.1 2,-0.1 -34,-0.1 0.843 121.4 53.7 -56.0 -35.2 -69.3 11.5 10.7 37 41 A D T 3 S- 0 0 108 1,-0.1 -1,-0.3 -35,-0.1 -2,-0.1 0.194 109.1-124.3 -83.2 7.5 -69.5 8.1 9.0 38 42 A G S < S+ 0 0 16 -3,-2.5 -2,-0.1 1,-0.1 3,-0.1 0.658 81.7 114.7 58.5 22.6 -65.8 8.3 8.1 39 43 A S + 0 0 61 1,-0.2 41,-2.8 40,-0.1 2,-0.4 0.782 67.6 36.1 -95.7 -34.0 -66.9 7.8 4.5 40 44 A V E - b 0 80A 52 39,-0.3 -5,-2.5 2,-0.0 2,-0.4 -0.961 59.1-166.9-127.5 144.9 -65.9 11.1 2.8 41 45 A L E -Ab 34 81A 0 39,-2.8 41,-1.7 -2,-0.4 2,-0.5 -0.987 9.0-153.2-128.6 144.2 -63.1 13.6 3.1 42 46 A S E -Ab 33 82A 22 -9,-2.9 -9,-2.1 -2,-0.4 2,-0.7 -0.956 11.0-157.4-114.5 126.7 -62.7 17.1 1.8 43 47 A V E -Ab 32 83A 0 39,-3.0 41,-2.7 -2,-0.5 2,-1.4 -0.911 4.3-157.2-112.9 104.5 -59.2 18.3 1.2 44 48 A Y E -Ab 31 84A 57 -13,-2.5 -14,-3.0 -2,-0.7 -13,-1.0 -0.688 21.2-160.3 -80.8 88.3 -58.8 22.1 1.2 45 49 A V E -Ab 29 85A 4 39,-1.5 41,-0.8 -2,-1.4 -16,-0.3 -0.833 3.1-147.9 -79.8 141.1 -55.5 22.3 -0.8 46 50 A E E +A 28 0A 13 -18,-1.4 -18,-3.7 -2,-0.5 2,-0.3 -0.636 22.7 167.6-106.4 122.6 -53.4 25.5 -0.6 47 51 A A E -A 27 0A 2 -2,-0.3 3,-0.2 -20,-0.2 -20,-0.1 -0.961 39.9-139.0-142.7 153.6 -51.3 26.8 -3.6 48 52 A F S S+ 0 0 148 -24,-0.6 2,-0.3 -22,-0.6 -23,-0.1 0.798 94.7 17.4 -77.5 -30.7 -49.4 29.9 -4.6 49 53 A R S S- 0 0 164 -25,-0.8 -1,-0.3 2,-0.0 2,-0.2 -0.969 77.2-125.6-148.4 129.2 -50.6 29.8 -8.3 50 54 A E + 0 0 134 -2,-0.3 2,-0.3 -3,-0.2 3,-0.1 -0.514 28.2 178.2 -73.3 135.7 -53.5 27.9 -9.9 51 55 A E > - 0 0 32 -2,-0.2 4,-1.9 1,-0.1 -27,-0.1 -0.985 33.5-130.2-137.8 140.8 -52.7 25.7 -12.8 52 56 A E H >>S+ 0 0 150 -2,-0.3 4,-1.4 2,-0.2 5,-0.6 0.872 107.1 53.1 -53.3 -47.3 -55.2 23.6 -14.7 53 57 A G H >5S+ 0 0 26 1,-0.2 4,-3.4 3,-0.2 5,-0.4 0.951 110.4 46.3 -56.2 -49.9 -53.1 20.4 -14.5 54 58 A A H >5S+ 0 0 1 3,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.721 115.6 48.7 -73.8 -22.8 -52.7 20.6 -10.7 55 59 A L H >X5S+ 0 0 69 -4,-1.9 3,-1.3 -3,-0.4 4,-0.8 0.940 126.5 22.1 -66.8 -85.9 -56.5 21.3 -10.3 56 60 A R H 3X5S+ 0 0 190 -4,-1.4 4,-2.3 1,-0.3 -2,-0.2 0.738 118.5 65.3 -52.5 -31.8 -58.0 18.6 -12.5 57 61 A A H 3X< S+ 0 0 63 -4,-0.8 3,-1.1 2,-0.2 4,-0.4 0.913 113.5 50.0 -72.9 -36.8 -59.0 14.5 -9.3 60 64 A R H 3< S+ 0 0 230 -4,-2.3 3,-0.4 1,-0.3 4,-0.3 0.878 114.2 46.0 -67.3 -34.3 -57.4 12.3 -11.9 61 65 A A T 3X S+ 0 0 37 -4,-2.5 4,-2.6 1,-0.2 -1,-0.3 0.422 83.7 103.0 -91.8 8.2 -54.8 11.2 -9.4 62 66 A E H <> S+ 0 0 52 -3,-1.1 4,-2.8 1,-0.2 5,-0.2 0.888 77.6 51.3 -61.2 -43.9 -57.4 10.6 -6.6 63 67 A R H > S+ 0 0 204 -3,-0.4 4,-2.3 -4,-0.4 -1,-0.2 0.927 113.6 44.9 -61.8 -42.9 -57.4 6.8 -6.8 64 68 A R H > S+ 0 0 196 -4,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.927 112.5 52.2 -65.9 -40.0 -53.6 6.7 -6.6 65 69 A L H X S+ 0 0 13 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.905 108.5 50.3 -64.9 -38.3 -53.7 9.2 -3.7 66 70 A V H X S+ 0 0 31 -4,-2.8 4,-2.9 2,-0.2 -2,-0.2 0.961 107.6 54.2 -65.7 -40.1 -56.2 7.1 -1.8 67 71 A A H X S+ 0 0 60 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.883 109.4 48.1 -62.0 -36.8 -54.0 4.0 -2.3 68 72 A A H X S+ 0 0 42 -4,-2.0 4,-2.7 2,-0.2 -1,-0.2 0.915 110.2 50.8 -70.2 -40.4 -51.1 5.9 -0.7 69 73 A L H X S+ 0 0 7 -4,-2.4 4,-3.3 2,-0.2 5,-0.4 0.957 107.8 55.2 -60.9 -41.2 -53.3 7.0 2.2 70 74 A A H X>S+ 0 0 33 -4,-2.9 4,-2.0 1,-0.2 5,-0.5 0.871 112.2 41.9 -56.2 -48.0 -54.3 3.3 2.7 71 75 A R H <5S+ 0 0 208 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.906 117.3 46.9 -69.5 -43.7 -50.7 2.3 2.9 72 76 A R H <5S+ 0 0 154 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.873 125.9 27.3 -67.5 -42.2 -49.6 5.3 5.1 73 77 A V H <5S- 0 0 38 -4,-3.3 -1,-0.2 -5,-0.2 -2,-0.2 0.604 90.9-139.1 -96.5 -23.0 -52.5 5.0 7.6 74 78 A R T <5 + 0 0 223 -4,-2.0 2,-0.3 -5,-0.4 -3,-0.2 0.901 40.7 166.8 59.6 41.1 -53.4 1.3 7.4 75 79 A M < - 0 0 45 -5,-0.5 3,-0.2 -6,-0.2 -1,-0.2 -0.660 40.6-141.9 -80.3 148.0 -57.1 2.0 7.4 76 80 A R S S+ 0 0 221 -2,-0.3 2,-0.5 1,-0.3 -1,-0.1 0.864 95.5 30.3 -68.9 -46.4 -59.6 -0.8 6.5 77 81 A R S S- 0 0 148 -3,-0.0 -1,-0.3 -39,-0.0 0, 0.0 -0.966 76.8-155.5-123.9 103.9 -61.8 1.8 4.7 78 82 A L - 0 0 42 -2,-0.5 3,-0.1 -3,-0.2 -12,-0.1 -0.790 25.9-116.7 -79.8 129.3 -60.3 4.8 3.1 79 83 A P - 0 0 11 0, 0.0 -39,-0.3 0, 0.0 2,-0.2 -0.184 29.6-104.3 -59.3 148.6 -62.6 7.7 2.7 80 84 A R E -b 40 0A 189 -41,-2.8 -39,-2.8 1,-0.0 2,-0.4 -0.510 44.3-139.0 -65.7 143.9 -63.5 8.9 -0.7 81 85 A L E -b 41 0A 20 -41,-0.2 2,-0.3 -2,-0.2 -39,-0.2 -0.945 23.5-178.3-119.3 139.9 -61.6 12.2 -1.4 82 86 A E E -b 42 0A 92 -41,-1.7 -39,-3.0 -2,-0.4 2,-0.4 -0.994 19.9-138.1-126.7 145.6 -62.5 15.5 -3.0 83 87 A F E -b 43 0A 46 -2,-0.3 -39,-0.2 -41,-0.2 -24,-0.1 -0.828 17.3-167.6-107.1 132.2 -60.2 18.5 -3.5 84 88 A L E -b 44 0A 57 -41,-2.7 -39,-1.5 -2,-0.4 3,-0.1 -0.919 36.9 -86.1-117.9 146.4 -61.4 22.0 -2.9 85 89 A P E -b 45 0A 71 0, 0.0 -39,-0.2 0, 0.0 2,-0.1 -0.181 56.3-101.9 -51.2 131.7 -59.7 25.3 -3.9 86 90 A W S S- 0 0 26 -41,-0.8 2,-2.5 1,-0.2 -40,-0.1 -0.366 72.0 -42.4 -61.9 146.2 -57.3 26.4 -1.3 87 91 A R - 0 0 90 1,-0.3 -1,-0.2 -43,-0.1 -41,-0.1 -0.578 40.0-176.6 60.9 -90.2 -58.3 29.0 0.9 88 92 A A + 0 0 96 -2,-2.5 -1,-0.3 1,-0.3 -2,-0.1 -0.216 63.6 121.2 -30.4 22.4 -59.7 31.0 -1.1 89 93 A S S S- 0 0 50 1,-0.1 -1,-0.3 0, 0.0 2,-0.1 -0.138 79.3 -91.0 -50.9 140.2 -59.5 32.0 2.6 90 94 A P 0 0 132 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.416 360.0 360.0 -64.8 134.5 -57.6 35.3 3.2 91 95 A A 0 0 126 -2,-0.1 -3,-0.0 -3,-0.1 0, 0.0 -0.991 360.0 360.0-137.6 360.0 -53.8 34.9 3.8