==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 25-AUG-92 1RAQ . COMPND 2 MOLECULE: REP A2 ISO-1-CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR M.E.P.MURPHY,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6486.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 140 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-118.3 5.0 10.8 -6.6 2 -4 A E + 0 0 176 1,-0.1 2,-0.3 0, 0.0 65,-0.0 -0.029 360.0 97.3 178.5 -11.8 1.3 11.5 -6.2 3 -3 A F - 0 0 29 93,-0.0 2,-0.4 94,-0.0 -1,-0.1 -0.644 54.4-162.6 -95.4 142.1 1.8 15.2 -5.5 4 -2 A K - 0 0 158 -2,-0.3 97,-0.1 -3,-0.1 0, 0.0 -0.990 28.0-110.5-126.4 131.8 1.5 18.0 -8.1 5 -1 A A + 0 0 71 -2,-0.4 93,-0.2 1,-0.1 2,-0.2 -0.184 42.9 171.6 -56.9 158.7 3.0 21.5 -7.5 6 1 A G - 0 0 39 91,-0.5 2,-0.5 92,-0.2 -1,-0.1 -0.383 44.9 -33.1-140.8-146.5 0.4 24.3 -7.0 7 2 A S > - 0 0 49 1,-0.2 4,-2.1 -2,-0.2 95,-0.3 -0.808 36.9-166.5 -93.9 124.6 0.5 27.9 -6.0 8 3 A A H > S+ 0 0 22 -2,-0.5 4,-2.1 2,-0.2 -1,-0.2 0.780 95.0 55.2 -76.8 -28.3 3.3 28.9 -3.6 9 4 A K H > S+ 0 0 186 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.969 110.7 45.0 -63.4 -50.9 1.4 32.2 -3.1 10 5 A K H > S+ 0 0 90 1,-0.2 4,-1.4 2,-0.2 3,-0.5 0.885 112.7 51.1 -54.0 -49.6 -1.6 30.2 -2.2 11 6 A G H X S+ 0 0 0 -4,-2.1 4,-2.3 87,-0.4 -1,-0.2 0.802 102.8 60.6 -61.1 -34.3 0.5 27.9 0.1 12 7 A A H X S+ 0 0 18 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.872 108.6 43.3 -61.1 -42.5 2.0 30.9 1.9 13 8 A T H X S+ 0 0 69 -4,-1.2 4,-2.4 -3,-0.5 -1,-0.2 0.726 109.9 54.7 -79.8 -24.4 -1.4 32.1 3.1 14 9 A L H X S+ 0 0 19 -4,-1.4 4,-1.9 2,-0.2 5,-0.3 0.878 111.6 47.3 -68.9 -44.1 -2.5 28.6 4.0 15 10 A F H X>S+ 0 0 2 -4,-2.3 4,-3.1 2,-0.2 5,-1.8 0.961 112.1 47.4 -59.4 -56.6 0.6 28.4 6.2 16 11 A K H <5S+ 0 0 126 -4,-2.2 4,-0.2 1,-0.2 5,-0.2 0.909 120.6 39.7 -55.5 -44.3 0.1 31.8 7.8 17 12 A T H <5S+ 0 0 106 -4,-2.4 -1,-0.2 1,-0.1 -2,-0.2 0.693 132.0 20.1 -87.0 -11.1 -3.6 30.9 8.4 18 13 A R H <5S+ 0 0 137 -4,-1.9 -3,-0.2 -3,-0.5 -2,-0.2 0.619 131.8 25.7-127.2 -20.1 -3.2 27.3 9.5 19 14 A C T >X5S+ 0 0 22 -4,-3.1 3,-1.2 -5,-0.3 4,-1.1 0.631 97.9 76.1-118.4 -32.8 0.4 26.6 10.6 20 15 A L T 34 S- 0 0 81 1,-0.1 3,-2.0 12,-0.1 12,-0.3 -0.319 80.3-100.9 -67.6 146.9 12.7 30.3 8.3 27 22 A Q T 3 S+ 0 0 146 1,-0.3 -1,-0.1 10,-0.1 3,-0.1 -0.550 116.7 18.5 -67.5 125.3 16.4 29.3 8.8 28 23 A G T 3 S+ 0 0 76 1,-0.3 -1,-0.3 -2,-0.3 2,-0.2 0.685 96.5 143.6 81.1 11.1 17.2 30.4 12.4 29 24 A G < - 0 0 19 -3,-2.0 -1,-0.3 1,-0.1 2,-0.2 -0.538 50.4-105.8 -81.0 155.9 13.5 30.6 13.1 30 25 A A - 0 0 62 -2,-0.2 -6,-0.2 -3,-0.1 2,-0.1 -0.568 17.3-113.3 -92.0 154.1 12.4 29.5 16.6 31 26 A N + 0 0 61 -2,-0.2 2,-0.2 18,-0.1 -8,-0.1 -0.539 45.2 163.7 -74.0 145.4 10.7 26.4 18.0 32 27 A K - 0 0 93 2,-3.1 -10,-0.1 -10,-0.5 -9,-0.1 -0.153 69.4 -34.6-132.3-129.0 7.3 27.4 19.3 33 28 A V S S+ 0 0 102 -12,-0.3 -10,-0.1 -2,-0.2 -11,-0.1 0.934 141.8 31.2 -59.7 -47.8 4.4 25.0 20.1 34 29 A G S S- 0 0 5 -12,-3.1 -2,-3.1 1,-0.1 -10,-0.2 -0.603 104.2 -90.7-103.1 163.7 5.7 23.0 17.1 35 30 A P - 0 0 14 0, 0.0 -11,-0.2 0, 0.0 2,-0.2 -0.342 46.0 -95.0 -73.0 156.5 9.3 22.7 15.9 36 31 A N - 0 0 21 -7,-0.2 -11,-0.2 -13,-0.2 -5,-0.1 -0.550 33.0-151.4 -65.6 136.9 10.8 25.0 13.3 37 32 A L > + 0 0 29 -13,-2.5 3,-2.4 -2,-0.2 4,-0.2 0.396 46.3 134.8 -94.5 -3.4 10.4 23.3 9.9 38 33 A H T 3 S+ 0 0 40 -12,-0.3 70,-0.2 1,-0.3 69,-0.1 -0.347 82.8 8.6 -54.1 127.6 13.4 24.8 8.1 39 34 A G T 3 S+ 0 0 28 68,-2.8 -1,-0.3 -14,-0.2 69,-0.1 0.633 85.5 137.4 71.4 26.7 15.1 21.9 6.3 40 35 A I X + 0 0 8 -3,-2.4 3,-1.9 63,-0.1 24,-0.3 0.822 42.6 94.0 -66.2 -33.8 12.4 19.4 7.0 41 36 A F T 3 S+ 0 0 41 1,-0.3 24,-0.2 -4,-0.2 3,-0.1 -0.475 97.6 11.2 -69.3 129.4 12.4 17.8 3.5 42 37 A G T 3 S+ 0 0 51 22,-4.2 -1,-0.3 1,-0.4 2,-0.2 0.387 109.1 110.3 83.8 3.2 14.6 14.8 3.2 43 38 A R < - 0 0 63 -3,-1.9 21,-3.6 21,-0.4 -1,-0.4 -0.628 68.8-118.8-102.7 159.6 14.9 14.8 7.0 44 39 A H B > -A 63 0A 69 19,-0.2 3,-0.5 -2,-0.2 19,-0.2 -0.607 40.2 -85.2 -94.6 169.5 13.4 12.2 9.4 45 40 A S T 3 S+ 0 0 2 17,-1.5 -1,-0.1 1,-0.2 16,-0.0 -0.244 104.0 24.4 -70.5 150.6 10.8 12.9 12.1 46 41 A G T 3 S+ 0 0 18 1,-0.1 -1,-0.2 14,-0.0 7,-0.1 0.743 84.9 108.6 69.3 33.8 11.8 14.1 15.5 47 42 A Q < + 0 0 116 -3,-0.5 2,-0.3 2,-0.1 -2,-0.1 0.452 31.5 128.0-123.3 9.9 15.2 15.6 14.8 48 43 A A > - 0 0 17 1,-0.1 3,-1.5 2,-0.1 5,-0.2 -0.532 69.5-108.7 -65.8 128.6 14.7 19.4 15.1 49 44 A E T 3 S+ 0 0 184 -2,-0.3 -18,-0.1 1,-0.3 -1,-0.1 -0.364 95.8 8.5 -61.5 129.6 17.4 20.6 17.5 50 45 A G T 3 S+ 0 0 80 1,-0.2 2,-0.4 -2,-0.1 -1,-0.3 0.503 96.4 127.0 75.9 9.2 16.1 21.6 21.0 51 46 A Y < - 0 0 42 -3,-1.5 2,-1.5 -15,-0.1 -1,-0.2 -0.830 56.1-136.7-108.3 139.2 12.5 20.3 20.6 52 47 A S - 0 0 92 -2,-0.4 -1,-0.0 -18,-0.0 -6,-0.0 -0.549 30.6-176.9 -89.7 84.1 10.6 18.0 22.8 53 48 A Y - 0 0 33 -2,-1.5 2,-0.1 -5,-0.2 30,-0.0 -0.324 28.5-109.5 -75.2 164.8 8.8 15.6 20.5 54 49 A T > - 0 0 32 1,-0.1 4,-1.6 -2,-0.0 5,-0.1 -0.407 32.6-108.7 -81.6 162.8 6.4 12.9 21.8 55 50 A D H > S+ 0 0 112 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.888 116.0 63.0 -58.6 -44.5 7.6 9.3 21.5 56 51 A A H > S+ 0 0 23 26,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.925 104.7 44.1 -46.2 -58.3 5.1 8.7 18.6 57 52 A N H >> S+ 0 0 14 1,-0.2 4,-1.1 2,-0.2 3,-0.7 0.972 114.9 48.0 -54.1 -61.8 6.7 11.2 16.3 58 53 A I H 3< S+ 0 0 85 -4,-1.6 3,-0.3 1,-0.3 -1,-0.2 0.822 114.3 46.4 -44.7 -47.5 10.2 10.1 17.0 59 54 A K H 3< S+ 0 0 152 -4,-2.6 -1,-0.3 1,-0.2 -2,-0.2 0.732 97.3 70.5 -71.1 -28.4 9.4 6.4 16.6 60 55 A K H << S- 0 0 85 -4,-2.0 -1,-0.2 -3,-0.7 -2,-0.2 0.884 79.0-167.7 -59.4 -32.3 7.4 7.0 13.4 61 56 A N < - 0 0 78 -4,-1.1 -3,-0.1 -3,-0.3 -1,-0.1 0.815 13.7-179.5 41.7 44.0 10.8 7.7 11.8 62 57 A V - 0 0 7 -5,-0.4 -17,-1.5 1,-0.1 2,-0.7 -0.426 28.3-133.9 -69.0 139.4 9.2 9.2 8.7 63 58 A L B -A 44 0A 67 -19,-0.2 2,-1.0 -2,-0.1 -19,-0.2 -0.895 30.2-127.8 -95.2 120.1 11.5 10.4 5.9 64 59 A W + 0 0 12 -21,-3.6 -22,-4.2 -2,-0.7 -21,-0.4 -0.573 48.5 141.1 -82.1 108.6 10.0 13.8 5.0 65 60 A D > - 0 0 52 -2,-1.0 4,-1.9 -24,-0.2 5,-0.1 -0.739 66.3 -91.2-128.1 175.7 9.3 14.2 1.3 66 61 A E H > S+ 0 0 67 -2,-0.2 4,-0.9 1,-0.2 34,-0.1 0.775 123.7 50.1 -60.7 -37.0 6.4 15.9 -0.5 67 62 A N H > S+ 0 0 49 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.887 112.0 45.1 -70.7 -48.6 4.4 12.7 -0.7 68 63 A N H > S+ 0 0 42 1,-0.2 4,-2.9 2,-0.2 -2,-0.2 0.878 110.8 56.1 -56.1 -45.7 4.7 11.7 2.9 69 64 A M H X S+ 0 0 14 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.800 104.6 52.2 -61.2 -34.7 3.9 15.3 3.9 70 65 A S H X S+ 0 0 16 -4,-0.9 4,-1.3 2,-0.2 -1,-0.2 0.900 110.3 47.4 -72.5 -43.2 0.6 15.2 1.9 71 66 A E H >X S+ 0 0 103 -4,-1.5 4,-0.9 2,-0.2 3,-0.5 0.944 114.1 47.8 -59.8 -49.9 -0.5 12.0 3.7 72 67 A Y H >< S+ 0 0 19 -4,-2.9 3,-0.8 1,-0.2 7,-0.3 0.926 108.0 55.7 -59.6 -45.1 0.4 13.4 7.1 73 68 A L H 3< S+ 0 0 12 -4,-2.2 17,-2.8 1,-0.2 -1,-0.2 0.745 96.3 65.5 -64.5 -23.2 -1.4 16.7 6.3 74 69 A T H << S- 0 0 50 -4,-1.3 -1,-0.2 -3,-0.5 -2,-0.2 0.880 133.1 -17.7 -63.5 -42.9 -4.7 14.9 5.6 75 70 A N S+ 0 0 0 0, 0.0 4,-3.6 0, 0.0 7,-0.2 0.842 86.9 51.2 -53.3 -45.8 -1.9 13.8 11.3 77 72 A X H 4 S+ 0 0 143 10,-0.3 6,-0.2 2,-0.2 5,-0.1 0.783 110.2 50.4 -69.6 -28.1 -3.1 11.8 14.3 78 73 A K H 4 S+ 0 0 166 -3,-0.3 -1,-0.2 1,-0.2 -6,-0.1 0.867 115.5 43.7 -77.1 -32.4 -4.2 9.0 11.9 79 74 A Y H < S+ 0 0 34 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.910 131.8 22.4 -74.1 -44.6 -0.8 9.1 10.3 80 75 A I S >< S- 0 0 3 -4,-3.6 3,-2.5 -5,-0.2 -1,-0.3 -0.755 81.5-156.1-127.5 80.0 1.1 9.4 13.7 81 76 A P T 3 S+ 0 0 94 0, 0.0 -3,-0.1 0, 0.0 3,-0.1 -0.368 84.7 29.2 -54.2 124.4 -1.2 8.0 16.5 82 77 A G T 3 S+ 0 0 60 1,-0.4 -26,-0.3 -5,-0.1 -25,-0.1 0.258 85.5 139.2 106.3 -17.5 0.0 9.6 19.7 83 78 A T < - 0 0 8 -3,-2.5 -1,-0.4 -6,-0.2 -3,-0.1 -0.390 48.1-146.4 -62.4 144.7 1.3 12.8 18.1 84 79 A K + 0 0 104 -3,-0.1 2,-0.4 -2,-0.1 -1,-0.1 0.479 59.7 120.1 -91.6 -5.0 0.6 16.0 20.1 85 80 A M - 0 0 42 1,-0.1 2,-1.1 -9,-0.1 -8,-0.1 -0.513 56.2-151.0 -63.1 118.7 0.1 18.3 17.0 86 81 A A + 0 0 88 -2,-0.4 2,-0.5 -10,-0.1 -1,-0.1 -0.478 51.6 123.4 -95.0 61.5 -3.5 19.4 17.5 87 82 A F - 0 0 40 -2,-1.1 -10,-0.3 1,-0.1 3,-0.1 -0.990 51.9-152.3-126.9 117.6 -4.3 20.0 13.8 88 83 A G - 0 0 64 -2,-0.5 2,-0.1 1,-0.2 -1,-0.1 0.666 48.9-107.3 -65.7 -26.8 -7.3 18.1 12.3 89 84 A G - 0 0 15 -14,-0.1 2,-0.6 -13,-0.1 -15,-0.3 -0.314 17.8 -89.0 120.9 159.0 -5.9 18.0 8.7 90 85 A L - 0 0 12 -17,-2.8 6,-0.1 -20,-0.2 -15,-0.0 -0.962 34.8-172.3-113.4 106.4 -6.3 19.5 5.2 91 86 A K + 0 0 178 -2,-0.6 2,-0.5 4,-0.0 -1,-0.1 0.779 60.9 79.2 -74.8 -34.3 -8.9 17.3 3.4 92 87 A K > - 0 0 100 1,-0.1 4,-1.9 -18,-0.0 3,-0.3 -0.681 68.4-149.3 -83.2 126.7 -8.6 18.8 -0.1 93 88 A E H > S+ 0 0 104 -2,-0.5 4,-2.5 1,-0.2 5,-0.2 0.827 97.7 61.3 -60.3 -31.1 -5.6 17.6 -2.1 94 89 A K H > S+ 0 0 129 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.928 104.7 47.3 -64.4 -43.3 -5.5 21.1 -3.9 95 90 A D H > S+ 0 0 36 -3,-0.3 4,-2.8 1,-0.2 -1,-0.2 0.915 113.2 48.8 -61.9 -44.8 -4.9 22.8 -0.5 96 91 A R H X S+ 0 0 28 -4,-1.9 4,-3.1 2,-0.2 5,-0.2 0.860 109.5 51.8 -62.0 -40.2 -2.2 20.3 0.4 97 92 A N H X S+ 0 0 13 -4,-2.5 4,-1.5 2,-0.2 -91,-0.5 0.929 111.8 47.1 -61.4 -46.0 -0.4 20.7 -3.0 98 93 A D H X S+ 0 0 22 -4,-2.2 4,-2.0 2,-0.2 -87,-0.4 0.942 113.9 47.0 -58.8 -56.1 -0.4 24.4 -2.6 99 94 A L H X S+ 0 0 2 -4,-2.8 4,-3.1 1,-0.2 -2,-0.2 0.940 113.2 47.5 -54.2 -51.2 0.9 24.3 1.0 100 95 A I H X S+ 0 0 0 -4,-3.1 4,-2.5 2,-0.2 -1,-0.2 0.777 107.8 56.7 -60.7 -27.7 3.6 21.7 0.2 101 96 A T H X S+ 0 0 10 -4,-1.5 4,-1.3 -3,-0.3 -1,-0.2 0.918 112.6 42.9 -68.2 -42.7 4.7 23.8 -2.8 102 97 A Y H X S+ 0 0 34 -4,-2.0 4,-3.7 -95,-0.3 -2,-0.2 0.914 115.1 47.4 -65.0 -47.5 5.2 26.7 -0.4 103 98 A L H X S+ 0 0 7 -4,-3.1 4,-3.4 2,-0.2 -2,-0.2 0.901 109.2 55.5 -62.8 -45.3 6.9 24.5 2.3 104 99 A K H < S+ 0 0 73 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.880 116.4 38.3 -45.5 -48.8 9.2 23.0 -0.4 105 100 A K H >< S+ 0 0 123 -4,-1.3 3,-0.7 -5,-0.2 -2,-0.2 0.933 121.4 40.6 -74.5 -51.9 10.2 26.5 -1.3 106 101 A A H 3< S+ 0 0 25 -4,-3.7 -2,-0.2 1,-0.2 -3,-0.2 0.832 109.6 56.9 -77.3 -32.6 10.4 28.2 2.2 107 102 A C T 3< 0 0 1 -4,-3.4 -68,-2.8 -5,-0.2 -1,-0.2 0.332 360.0 360.0 -79.2 4.0 12.0 25.3 4.1 108 103 A E < 0 0 178 -3,-0.7 -1,-0.2 -70,-0.2 -2,-0.1 0.843 360.0 360.0 -93.2 360.0 15.0 25.1 1.9