==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 06-JAN-95 1RGD . COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR M.A.A.VAN TILBORG,A.M.J.J.BONVIN,K.HARD,A.DAVIS,B.MALER, . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4210.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 69.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 18.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 29.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A C > 0 0 15 0, 0.0 4,-1.3 0, 0.0 16,-0.3 0.000 360.0 360.0 360.0 120.1 -1.1 3.4 -7.7 2 2 A L T 4 + 0 0 97 14,-1.2 15,-0.1 1,-0.2 5,-0.1 0.684 360.0 25.4 -46.1 -30.0 -0.5 6.7 -5.9 3 3 A V T 4 S+ 0 0 16 3,-0.1 -1,-0.2 42,-0.1 42,-0.1 0.853 135.2 22.5-102.7 -74.9 2.6 4.8 -4.6 4 4 A C T 4 S- 0 0 4 2,-0.1 -2,-0.1 42,-0.1 3,-0.1 0.575 92.0-129.2 -74.3 -35.6 3.9 2.0 -6.8 5 5 A S < + 0 0 70 -4,-1.3 2,-1.0 1,-0.3 3,-0.1 0.209 61.2 139.2 87.0 12.5 2.3 3.4 -10.0 6 6 A D S S- 0 0 93 1,-0.1 -1,-0.3 12,-0.0 -2,-0.1 -0.607 74.1 -91.3 -76.0 86.0 0.7 0.1 -11.0 7 7 A E - 0 0 162 -2,-1.0 12,-0.3 -6,-0.1 2,-0.3 0.222 50.7-161.8 -18.5 124.5 -2.6 1.8 -12.2 8 8 A A - 0 0 15 10,-0.2 2,-0.3 8,-0.2 10,-0.2 -0.823 11.1-139.0-105.9 165.6 -5.3 2.2 -9.7 9 9 A S - 0 0 64 8,-0.6 8,-0.2 -2,-0.3 0, 0.0 -0.939 18.3-128.4-136.8 143.3 -9.1 2.8 -9.6 10 10 A G + 0 0 28 -2,-0.3 4,-0.4 6,-0.1 3,-0.2 0.975 57.2 133.9 -51.5 -75.6 -11.2 5.0 -7.3 11 11 A C S > S- 0 0 94 1,-0.2 3,-1.9 2,-0.2 5,-0.1 0.205 76.3 -37.3 48.6-168.4 -13.8 2.5 -6.1 12 12 A H T 3 S+ 0 0 131 1,-0.3 58,-0.9 2,-0.1 -1,-0.2 0.813 135.9 56.8 -53.3 -33.2 -15.1 2.0 -2.5 13 13 A Y T 3 S- 0 0 37 1,-0.2 2,-2.3 -3,-0.2 58,-0.6 0.549 89.2-160.9 -82.6 -1.9 -11.6 2.4 -0.9 14 14 A G < + 0 0 22 -3,-1.9 2,-1.0 -4,-0.4 -1,-0.2 -0.399 62.0 92.7 62.9 -73.0 -11.5 5.9 -2.5 15 15 A V S S- 0 0 19 -2,-2.3 2,-1.9 52,-0.3 -1,-0.1 -0.431 79.9-134.7 -60.7 109.8 -7.7 6.3 -2.3 16 16 A L + 0 0 79 -2,-1.0 -14,-1.2 -8,-0.1 2,-0.3 -0.298 50.7 139.3 -87.0 61.9 -6.5 5.0 -5.5 17 17 A T S S- 0 0 0 -2,-1.9 -8,-0.6 -16,-0.3 5,-0.1 -0.566 75.0 -63.8 -74.5 162.7 -3.6 2.8 -4.9 18 18 A C > - 0 0 3 -2,-0.3 4,-1.0 -10,-0.2 3,-0.2 -0.371 54.4-103.9 -59.0 142.1 -3.8 -0.3 -7.1 19 19 A G H >> S+ 0 0 37 -12,-0.3 4,-2.1 1,-0.2 3,-0.7 0.770 119.4 55.1 -28.6 -54.8 -6.8 -2.6 -6.5 20 20 A S H 3> S+ 0 0 64 1,-0.2 4,-3.0 2,-0.2 3,-0.2 0.938 102.8 51.2 -49.7 -55.3 -4.5 -5.1 -4.7 21 21 A C H 3> S+ 0 0 0 1,-0.2 4,-2.1 -3,-0.2 -1,-0.2 0.619 113.2 50.3 -60.9 -20.5 -3.0 -2.7 -2.0 22 22 A K H X S+ 0 0 1 -4,-2.1 4,-3.3 1,-0.2 3,-0.9 0.923 112.2 54.7 -55.6 -48.5 -5.2 -2.9 3.3 26 26 A K H 3X S+ 0 0 35 -4,-2.9 4,-1.9 1,-0.3 -2,-0.2 0.780 114.5 34.5 -50.1 -68.8 -8.7 -4.2 3.9 27 27 A R H 3X>S+ 0 0 172 -4,-2.8 4,-2.4 2,-0.2 5,-0.7 0.757 122.0 50.0 -59.7 -24.9 -7.7 -7.8 4.9 28 28 A A H <<5S+ 0 0 1 -4,-2.8 3,-0.3 -3,-0.9 -2,-0.2 0.997 109.6 50.3 -68.5 -64.8 -4.5 -6.3 6.6 29 29 A V H <5S+ 0 0 45 -4,-3.3 -2,-0.2 1,-0.3 -1,-0.2 0.650 117.8 43.3 -36.8 -60.3 -6.7 -3.8 8.5 30 30 A E H <5S- 0 0 124 -4,-1.9 -1,-0.3 -5,-0.4 -2,-0.2 0.881 138.2 -8.7 -56.1 -66.5 -8.8 -6.7 9.5 31 31 A G T <5S+ 0 0 64 -4,-2.4 2,-1.8 -3,-0.3 -3,-0.2 0.718 131.1 42.4-107.9 -75.9 -6.3 -9.4 10.5 32 32 A Q S - 0 0 121 -2,-0.7 3,-0.5 1,-0.1 20,-0.1 -0.045 33.5-119.7 -69.5 55.4 5.9 -1.7 9.8 37 37 A C T 3 - 0 0 24 -2,-2.1 -1,-0.1 1,-0.2 4,-0.1 0.016 38.7 -73.0 38.4 179.6 8.4 -2.4 6.9 38 38 A A T 3 S- 0 0 67 2,-0.2 -1,-0.2 -3,-0.1 3,-0.1 0.028 71.0-117.4 -77.5 20.3 11.7 -4.2 7.0 39 39 A G < + 0 0 69 -3,-0.5 2,-1.0 1,-0.2 -2,-0.1 0.689 66.7 153.7 17.9 58.6 12.4 -0.9 8.8 40 40 A R - 0 0 129 1,-0.1 -1,-0.2 13,-0.0 -2,-0.2 -0.820 69.0 -86.0-116.0 73.4 14.8 -0.4 6.0 41 41 A N S S- 0 0 133 -2,-1.0 -1,-0.1 1,-0.2 -4,-0.0 0.239 96.6 -30.0 16.5 65.6 14.8 3.4 6.0 42 42 A D S S- 0 0 86 1,-0.1 -1,-0.2 2,-0.0 -5,-0.0 0.962 81.0-142.9 69.2 70.1 11.9 4.2 3.7 43 43 A C - 0 0 0 -3,-0.1 2,-0.6 1,-0.1 -1,-0.1 -0.273 9.9-126.1 -61.5 134.3 11.8 1.2 1.4 44 44 A I + 0 0 53 1,-0.1 8,-0.5 2,-0.1 6,-0.1 -0.945 30.0 173.0 -92.3 121.8 10.8 1.8 -2.2 45 45 A I + 0 0 1 -2,-0.6 2,-0.1 6,-0.1 -1,-0.1 0.098 69.0 60.2-112.8 42.9 7.9 -0.2 -3.6 46 46 A D >> + 0 0 17 3,-0.1 2,-2.8 2,-0.1 3,-1.2 -0.219 69.8 49.1-140.4-153.4 8.1 1.9 -6.7 47 47 A K T 34 S+ 0 0 148 1,-0.3 -43,-0.0 2,-0.1 -1,-0.0 -0.118 125.1 30.0 25.7 -37.2 10.2 3.3 -9.7 48 48 A I T 34 S- 0 0 132 -2,-2.8 -1,-0.3 2,-0.1 -2,-0.1 0.271 110.5-127.0-110.2 -22.3 11.4 -0.1 -11.0 49 49 A R T <4 + 0 0 135 -3,-1.2 2,-0.4 1,-0.2 -2,-0.1 0.828 56.5 141.9 65.2 61.0 8.2 -1.7 -9.6 50 50 A R < - 0 0 98 -4,-0.8 2,-1.7 -6,-0.1 -1,-0.2 -0.924 55.1-126.6-128.9 133.7 9.6 -4.5 -7.4 51 51 A K + 0 0 109 -2,-0.4 -6,-0.1 1,-0.2 6,-0.0 -0.496 37.2 166.3 -86.6 78.7 8.2 -5.5 -4.1 52 52 A N S S+ 0 0 77 -2,-1.7 -1,-0.2 -8,-0.5 -7,-0.1 0.644 78.0 8.9 -63.8 -15.5 11.4 -5.2 -2.0 53 53 A C > - 0 0 12 -3,-0.1 4,-0.8 1,-0.1 3,-0.3 -0.584 57.3-161.7-175.8 96.9 9.2 -5.4 1.1 54 54 A P H >> S+ 0 0 71 0, 0.0 3,-1.1 0, 0.0 4,-0.9 0.873 96.3 61.4 -50.9 -31.2 5.4 -6.2 1.3 55 55 A A H >> S+ 0 0 24 1,-0.3 4,-1.2 2,-0.2 3,-0.8 0.940 99.8 54.3 -62.1 -44.1 5.3 -4.7 4.8 56 56 A C H 3> S+ 0 0 0 -3,-0.3 4,-2.6 1,-0.2 -1,-0.3 0.689 95.0 68.8 -66.9 -20.7 6.4 -1.3 3.4 57 57 A R H X>S+ 0 0 1 -4,-1.7 5,-3.4 -3,-0.5 4,-1.3 0.993 108.2 43.2 -66.4 -36.0 -0.6 3.4 1.4 62 62 A L H 3<5S+ 0 0 62 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.816 114.9 49.2 -68.3 -44.5 -0.9 5.5 4.5 63 63 A Q H 3<5S+ 0 0 108 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.686 110.8 48.5 -69.3 -39.1 1.8 7.9 3.3 64 64 A A H <<5S- 0 0 39 -4,-2.3 -1,-0.3 -3,-0.5 -2,-0.2 0.631 128.5-106.9 -66.4 -42.8 0.0 8.2 -0.1 65 65 A G T <5 + 0 0 18 -4,-1.3 2,-0.6 -5,-0.2 -3,-0.2 0.641 65.3 154.2 108.0 50.3 -3.0 8.7 2.0 66 66 A M < + 0 0 0 -5,-3.4 2,-0.4 -6,-0.2 -1,-0.2 -0.813 10.6 167.1-106.1 113.4 -4.9 5.5 1.6 67 67 A N > - 0 0 53 -2,-0.6 4,-1.3 -54,-0.3 -52,-0.3 -0.995 42.8-113.2-141.5 126.1 -7.3 4.3 4.2 68 68 A L T 4 S+ 0 0 8 -2,-0.4 2,-1.3 2,-0.2 -1,-0.1 0.707 107.2 50.5 -9.4 -81.1 -9.8 1.6 4.0 69 69 A E T 4 S- 0 0 122 1,-0.2 -56,-0.2 -55,-0.1 -1,-0.1 -0.734 127.8 -78.6 -78.7 82.1 -13.1 3.5 4.2 70 70 A A T 4 0 0 55 -2,-1.3 -56,-0.2 -58,-0.9 -2,-0.2 0.451 360.0 360.0 18.1 82.9 -12.3 6.2 1.6 71 71 A R < 0 0 176 -4,-1.3 -5,-0.1 -58,-0.6 -1,-0.1 0.966 360.0 360.0 -61.3 360.0 -10.0 8.7 3.2