==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN/DE NOVO PROTEIN 12-NOV-03 1RGR . COMPND 2 MOLECULE: PRESYNAPTIC DENSITY PROTEIN 95; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR A.PISERCHIO,G.D.SALINAS,T.LI,J.MARSHALL,M.R.SPALLER,D.F.MIER . 100 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5558.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 62.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 62 A E 0 0 166 0, 0.0 88,-2.1 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 73.6 -1.7 -13.9 7.2 2 63 A Y E -A 88 0A 134 86,-0.2 2,-0.4 55,-0.0 86,-0.2 -0.981 360.0-148.7-126.4 130.5 -3.6 -10.6 6.2 3 64 A E E -A 87 0A 112 84,-2.1 84,-2.1 -2,-0.4 2,-0.6 -0.791 11.4-138.3-100.5 136.8 -4.4 -7.7 8.5 4 65 A E E +A 86 0A 145 -2,-0.4 2,-0.4 82,-0.2 82,-0.2 -0.849 28.0 170.6-102.4 116.8 -7.6 -5.6 7.9 5 66 A I E -A 85 0A 49 80,-3.2 80,-2.2 -2,-0.6 2,-0.5 -0.964 16.8-162.6-130.9 112.0 -7.0 -1.8 8.4 6 67 A T E -A 84 0A 86 -2,-0.4 2,-0.3 78,-0.2 78,-0.2 -0.848 19.6-179.6 -94.3 131.0 -9.7 0.8 7.4 7 68 A L E -A 83 0A 2 76,-2.7 76,-1.9 -2,-0.5 2,-0.7 -0.970 32.0-114.9-134.9 141.9 -8.2 4.3 7.1 8 69 A E E -A 82 0A 105 -2,-0.3 74,-0.3 74,-0.2 2,-0.2 -0.708 35.3-139.6 -81.1 111.2 -9.7 7.8 6.2 9 70 A R - 0 0 42 -2,-0.7 5,-0.1 72,-0.7 6,-0.1 -0.493 15.1-117.1 -70.7 137.8 -8.1 8.9 2.8 10 71 A G - 0 0 19 -2,-0.2 -1,-0.1 4,-0.1 4,-0.1 -0.086 35.6 -96.2 -62.2 168.8 -7.1 12.6 2.3 11 72 A N S S- 0 0 154 1,-0.1 3,-0.1 3,-0.1 69,-0.1 0.968 103.9 -10.6 -61.4 -71.4 -8.8 14.8 -0.4 12 73 A S S S+ 0 0 109 1,-0.2 2,-0.4 2,-0.1 -1,-0.1 0.667 139.5 38.0-102.7 -27.4 -6.6 14.7 -3.5 13 74 A G - 0 0 45 1,-0.2 -1,-0.2 87,-0.1 87,-0.1 -0.979 68.2-153.8-123.7 144.5 -3.5 13.0 -1.9 14 75 A L - 0 0 8 -2,-0.4 29,-1.8 -5,-0.1 -1,-0.2 0.955 32.3-112.4 -76.5 -86.9 -3.6 10.2 0.8 15 76 A G S S+ 0 0 1 85,-1.4 24,-0.6 27,-0.3 30,-0.4 0.394 76.3 91.0 140.8 36.2 -0.4 10.1 3.0 16 77 A F E -D 38 0B 0 84,-2.2 84,-2.5 22,-0.3 2,-0.3 -0.799 58.3-139.0-137.2 175.8 1.6 6.9 2.3 17 78 A S E -DE 37 99B 0 20,-1.8 20,-2.0 82,-0.2 19,-1.5 -0.912 18.0-149.4-149.0 119.1 4.5 6.1 -0.2 18 79 A I E -DE 35 98B 0 80,-2.4 80,-1.5 -2,-0.3 17,-0.3 -0.748 2.2-147.8 -97.2 132.2 4.7 2.8 -2.1 19 80 A A - 0 0 1 15,-1.4 15,-0.2 -2,-0.4 78,-0.1 -0.182 46.2 -58.8 -79.5-177.5 7.7 0.8 -3.3 20 81 A G - 0 0 0 13,-0.2 12,-0.5 1,-0.1 6,-0.3 -0.154 35.3-162.8 -93.8 163.0 7.4 -1.2 -6.5 21 82 A G - 0 0 0 3,-0.4 3,-0.3 10,-0.1 47,-0.2 -0.123 58.9 -54.0-107.2-156.7 5.6 -4.0 -8.3 22 83 A T S S+ 0 0 83 45,-1.9 46,-0.2 43,-0.3 44,-0.1 0.864 133.7 46.8 -55.7 -43.1 6.2 -6.2 -11.3 23 84 A D S S+ 0 0 81 1,-0.3 -1,-0.2 44,-0.2 45,-0.1 0.791 132.1 16.7 -62.3 -38.3 6.8 -3.2 -13.8 24 85 A N S S- 0 0 23 -3,-0.3 2,-0.5 3,-0.1 -3,-0.4 -0.871 88.8-169.9-142.2 89.4 9.3 -1.4 -11.4 25 86 A P - 0 0 59 0, 0.0 3,-0.2 0, 0.0 -4,-0.1 -0.841 32.5-165.8-100.3 130.7 10.5 -3.9 -8.6 26 87 A H S S+ 0 0 102 -2,-0.5 2,-0.3 -6,-0.3 -5,-0.1 0.692 98.2 18.1 -58.7 -22.5 12.5 -3.1 -5.4 27 88 A I > - 0 0 53 -6,-0.2 3,-0.7 -7,-0.1 -1,-0.3 -0.928 61.8-157.3-157.3 117.4 12.9 -7.0 -5.5 28 89 A G T 3 S+ 0 0 74 -2,-0.3 -7,-0.0 -3,-0.2 -2,-0.0 0.343 90.2 72.4 -77.0 7.6 12.4 -9.4 -8.5 29 90 A D T 3 S+ 0 0 156 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.531 110.1 18.5 -97.8 -12.9 11.9 -12.3 -5.9 30 91 A D < - 0 0 38 -3,-0.7 2,-1.3 2,-0.1 -1,-0.2 -0.588 69.8-154.0-155.5 89.9 8.4 -11.3 -4.6 31 92 A P + 0 0 46 0, 0.0 2,-0.4 0, 0.0 -9,-0.1 -0.534 46.1 138.0 -70.5 94.0 6.3 -8.8 -6.9 32 93 A S - 0 0 1 -2,-1.3 2,-0.5 -12,-0.5 34,-0.1 -0.988 59.9-115.5-145.3 128.7 4.2 -7.3 -4.1 33 94 A I - 0 0 0 23,-0.4 23,-1.0 -2,-0.4 2,-0.3 -0.556 41.6-173.1 -74.4 115.8 3.3 -3.6 -3.7 34 95 A F - 0 0 13 -2,-0.5 -15,-1.4 -14,-0.2 2,-0.6 -0.728 27.3-129.1-104.3 156.0 5.0 -2.5 -0.5 35 96 A I E +D 18 0B 5 17,-0.4 -17,-0.3 -17,-0.3 3,-0.1 -0.959 27.4 173.9 -96.3 120.0 4.8 0.8 1.4 36 97 A T E + 0 0 58 -19,-1.5 2,-0.3 -2,-0.6 17,-0.2 0.673 66.3 27.8 -92.4 -25.0 8.5 2.0 2.1 37 98 A K E -D 17 0B 79 -20,-2.0 -20,-1.8 15,-0.2 2,-0.5 -0.978 64.7-139.0-138.7 150.7 7.5 5.4 3.6 38 99 A I E -D 16 0B 64 -2,-0.3 -22,-0.3 -22,-0.2 14,-0.1 -0.944 32.0-125.2 -99.3 126.2 4.6 7.1 5.6 39 100 A I > - 0 0 37 -24,-0.6 3,-1.7 -2,-0.5 6,-0.6 -0.644 32.0-117.5 -74.0 120.8 3.9 10.7 4.2 40 101 A P T 3 S+ 0 0 101 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.383 95.0 9.6 -69.6 132.1 4.1 13.0 7.4 41 102 A G T 3 S+ 0 0 73 1,-0.2 -2,-0.0 -2,-0.1 2,-0.0 0.408 110.0 109.5 74.9 0.1 0.8 14.8 8.2 42 103 A G S <> S- 0 0 12 -3,-1.7 4,-2.3 -27,-0.2 -27,-0.3 0.029 89.1 -69.1 -88.1-162.4 -1.1 12.6 5.6 43 104 A A H > S+ 0 0 0 -29,-1.8 4,-2.2 2,-0.2 5,-0.4 0.940 128.7 46.6 -57.2 -58.0 -3.7 9.8 5.9 44 105 A A H > S+ 0 0 1 -29,-0.4 4,-1.1 1,-0.2 6,-0.4 0.860 117.1 44.6 -50.5 -45.7 -1.4 7.1 7.4 45 106 A A H 4 S+ 0 0 44 -6,-0.6 -2,-0.2 -30,-0.4 -1,-0.2 0.848 118.5 41.4 -70.4 -40.5 0.1 9.4 10.0 46 107 A Q H < S+ 0 0 114 -4,-2.3 -2,-0.2 -38,-0.1 -3,-0.2 0.949 120.0 38.8 -72.1 -55.5 -3.3 11.1 11.1 47 108 A D H < S- 0 0 66 -4,-2.2 2,-0.2 -5,-0.2 -3,-0.2 0.833 130.4 -17.9 -72.3 -38.3 -5.7 8.0 11.2 48 109 A G < - 0 0 20 -4,-1.1 -41,-0.0 -5,-0.4 0, 0.0 -0.543 55.0-117.6-141.6-148.6 -3.1 5.5 12.7 49 110 A R + 0 0 230 -2,-0.2 -4,-0.1 2,-0.0 -5,-0.1 -0.368 51.2 151.8-164.9 59.9 0.6 4.8 13.3 50 111 A L - 0 0 48 -6,-0.4 2,-0.4 1,-0.1 3,-0.1 0.173 49.2 -91.4 -79.2-164.1 1.3 1.6 11.3 51 112 A R > - 0 0 120 1,-0.2 3,-0.6 -14,-0.0 -1,-0.1 -0.891 27.2-127.6-102.1 157.2 4.6 0.4 9.8 52 113 A V T 3 S+ 0 0 39 -2,-0.4 -17,-0.4 1,-0.2 -16,-0.2 0.996 99.7 71.0 -58.9 -65.1 5.3 1.3 6.2 53 114 A N T 3 + 0 0 34 -17,-0.2 -1,-0.2 -19,-0.1 2,-0.1 0.413 59.3 133.0 -39.5 -18.3 6.1 -2.3 5.0 54 115 A D < - 0 0 9 -3,-0.6 2,-0.8 -20,-0.1 -19,-0.1 -0.189 59.7-135.0 -34.9 99.7 2.3 -3.3 5.2 55 116 A S E -B 88 0A 4 33,-0.5 33,-1.3 -21,-0.1 2,-0.3 -0.650 15.0-118.9 -85.7 104.9 2.2 -5.1 1.9 56 117 A I E +B 87 0A 2 -23,-1.0 9,-0.4 -2,-0.8 -23,-0.4 -0.250 44.5 164.6 -57.9 104.1 -1.0 -4.0 0.0 57 118 A L E - 0 0 18 29,-2.2 7,-1.2 1,-0.4 2,-0.4 0.945 69.3 -2.4 -82.9 -63.6 -2.9 -7.3 -0.5 58 119 A F E -BC 86 63A 66 28,-2.0 28,-2.2 5,-0.2 2,-0.5 -0.998 60.4-163.6-132.5 135.5 -6.4 -6.1 -1.4 59 120 A V E > S-BC 85 62A 0 3,-1.4 2,-1.8 -2,-0.4 3,-1.6 -0.973 78.4 -35.4-119.1 112.5 -7.4 -2.4 -1.5 60 121 A N T 3 S- 0 0 40 24,-2.4 -2,-0.0 -2,-0.5 16,-0.0 -0.564 125.0 -41.8 77.7 -78.9 -11.3 -2.1 -1.4 61 122 A E T 3 S+ 0 0 163 -2,-1.8 -1,-0.3 0, 0.0 2,-0.2 0.252 107.2 119.4-159.5 -12.9 -11.9 -5.3 -3.5 62 123 A V E < -C 59 0A 74 -3,-1.6 -3,-1.4 13,-0.1 2,-1.0 -0.483 64.8-127.4 -68.2 134.8 -9.1 -4.9 -6.3 63 124 A D E +C 58 0A 88 -2,-0.2 -5,-0.2 -5,-0.2 -1,-0.1 -0.732 45.9 158.5 -87.2 97.0 -6.4 -7.7 -6.3 64 125 A V + 0 0 0 -7,-1.2 2,-1.6 -2,-1.0 -7,-0.1 0.264 35.3 78.8 -97.1-142.5 -3.1 -5.9 -6.1 65 126 A R S S+ 0 0 19 -9,-0.4 2,-1.8 1,-0.1 -43,-0.3 -0.545 100.2 50.6 71.8 -83.7 0.5 -7.2 -5.0 66 127 A E S S+ 0 0 97 -2,-1.6 2,-0.3 -34,-0.1 -34,-0.1 -0.536 101.6 92.9 -83.6 69.9 1.3 -9.0 -8.3 67 128 A V S S- 0 0 25 -2,-1.8 -45,-1.9 0, 0.0 2,-0.3 -0.939 91.4 -77.2-143.7 166.5 0.4 -5.9 -10.4 68 129 A T >> - 0 0 64 -2,-0.3 4,-1.2 -47,-0.2 3,-0.8 -0.578 45.7-122.8 -56.7 129.7 2.0 -2.9 -11.9 69 130 A H H 3> S+ 0 0 15 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.780 113.7 65.0 -48.5 -32.2 2.6 -0.4 -8.9 70 131 A S H 3> S+ 0 0 53 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.896 98.6 51.1 -57.6 -45.0 0.5 2.1 -11.0 71 132 A A H <> S+ 0 0 47 -3,-0.8 4,-2.3 2,-0.2 -2,-0.2 0.866 114.4 44.1 -60.4 -38.5 -2.6 -0.3 -10.6 72 133 A A H X S+ 0 0 0 -4,-1.2 4,-2.2 2,-0.2 -2,-0.2 0.903 114.3 47.3 -73.2 -44.3 -2.1 -0.3 -6.7 73 134 A V H X S+ 0 0 4 -4,-2.8 4,-2.1 2,-0.2 -2,-0.2 0.909 115.5 47.3 -57.7 -44.9 -1.4 3.5 -6.4 74 135 A E H X S+ 0 0 91 -4,-2.4 4,-3.2 2,-0.2 5,-0.2 0.959 112.1 49.2 -60.0 -50.8 -4.6 4.1 -8.6 75 136 A A H X S+ 0 0 8 -4,-2.3 4,-0.6 2,-0.2 -2,-0.2 0.816 109.0 54.1 -59.6 -31.9 -6.6 1.5 -6.4 76 137 A L H >< S+ 0 0 0 -4,-2.2 3,-0.6 2,-0.2 -2,-0.2 0.949 116.5 36.9 -59.3 -53.8 -5.4 3.4 -3.2 77 138 A K H >< S+ 0 0 68 -4,-2.1 3,-1.5 1,-0.2 -2,-0.2 0.850 110.2 62.6 -68.6 -35.9 -6.7 6.8 -4.6 78 139 A E H 3< S+ 0 0 146 -4,-3.2 -1,-0.2 1,-0.2 -2,-0.2 0.600 81.1 83.6 -64.1 -14.3 -9.8 5.1 -6.2 79 140 A A T X< S- 0 0 9 -3,-0.6 3,-0.8 -4,-0.6 2,-0.4 0.702 87.8-155.1 -55.0 -24.0 -10.9 4.1 -2.6 80 141 A G T < - 0 0 32 -3,-1.5 -1,-0.2 1,-0.2 3,-0.1 -0.676 62.0 -11.4 93.6-126.0 -12.4 7.7 -2.5 81 142 A S T 3 S+ 0 0 87 -2,-0.4 -72,-0.7 1,-0.2 2,-0.3 0.493 137.0 49.5 -79.9 -3.4 -12.8 9.2 1.1 82 143 A I E < -A 8 0A 77 -3,-0.8 2,-0.6 -74,-0.3 -74,-0.2 -0.914 67.9-155.0-149.9 106.8 -12.0 5.8 2.7 83 144 A V E -A 7 0A 0 -76,-1.9 -76,-2.7 -2,-0.3 2,-1.0 -0.757 7.4-158.7 -81.7 117.6 -9.1 3.4 2.0 84 145 A R E -A 6 0A 99 -2,-0.6 -24,-2.4 -78,-0.2 2,-0.4 -0.796 20.0-169.5 -99.5 90.6 -10.0 -0.3 2.9 85 146 A L E +AB 5 59A 4 -80,-2.2 -80,-3.2 -2,-1.0 2,-0.4 -0.698 17.1 179.7 -94.2 128.5 -6.5 -1.7 3.3 86 147 A Y E -AB 4 58A 41 -28,-2.2 -29,-2.2 -2,-0.4 -28,-2.0 -1.000 15.3-167.9-127.5 121.7 -6.0 -5.5 3.6 87 148 A V E -AB 3 56A 5 -84,-2.1 -84,-2.1 -2,-0.4 2,-0.2 -0.963 8.0-151.8-131.4 119.4 -2.2 -6.3 3.9 88 149 A M E -AB 2 55A 55 -33,-1.3 2,-0.7 -2,-0.4 -33,-0.5 -0.585 16.9-127.6 -91.6 148.1 -0.4 -9.8 3.6 89 150 A R + 0 0 41 -88,-2.1 -35,-0.1 -2,-0.2 -1,-0.0 -0.844 54.1 132.6 -95.1 109.3 2.9 -10.9 5.3 90 151 A R S S+ 0 0 69 -2,-0.7 -1,-0.2 -60,-0.1 -58,-0.0 0.656 79.0 6.4-118.1 -67.5 5.2 -12.3 2.6 91 152 A K + 0 0 142 -61,-0.1 -61,-0.0 2,-0.0 -2,-0.0 -0.750 66.6 176.6-125.9 84.7 8.7 -10.7 3.0 92 153 A P 0 0 76 0, 0.0 -3,-0.0 0, 0.0 -38,-0.0 -0.789 360.0 360.0 -81.6 115.5 8.9 -8.5 6.2 93 154 A P 0 0 154 0, 0.0 -40,-0.1 0, 0.0 -2,-0.0 -0.568 360.0 360.0 -71.2 360.0 12.7 -7.2 6.5 94 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 95 1 B Y 0 0 144 0, 0.0 2,-0.3 0, 0.0 -76,-0.0 0.000 360.0 360.0 360.0 161.7 12.8 1.0 -8.8 96 2 B K - 0 0 133 -72,-0.2 2,-0.7 -78,-0.0 -70,-0.1 -0.982 360.0-133.9-138.3 128.2 10.9 4.3 -8.1 97 3 B K - 0 0 45 -2,-0.3 2,-0.5 -78,-0.1 -78,-0.2 -0.714 21.4-148.9 -79.0 114.5 8.8 4.9 -4.9 98 4 B T E -E 18 0B 31 -80,-1.5 -80,-2.4 -2,-0.7 2,-0.3 -0.753 14.3-128.8 -88.7 126.5 5.5 6.5 -6.0 99 5 B E E E 17 0B 90 -2,-0.5 -82,-0.2 -82,-0.2 -85,-0.0 -0.551 360.0 360.0 -80.7 133.8 4.0 8.9 -3.4 100 6 B V 0 0 18 -84,-2.5 -84,-2.2 -2,-0.3 -85,-1.4 -0.762 360.0 360.0-141.3 360.0 0.4 8.2 -2.5 101 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 102 7 B X 0 0 53 0, 0.0 -65,-0.1 0, 0.0 -66,-0.1 0.000 360.0 360.0 360.0 360.0 10.0 10.0 -0.6