==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN, LIPID TRANSPORT 17-OCT-07 2RKN . COMPND 2 MOLECULE: DIR1 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR M.B.LASCOMBE,T.PRANGE,N.BUHOT,D.MARION,B.BAKAN,C.LAMB . 77 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5006.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 64.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 19.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 31.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 140 0, 0.0 2,-0.3 0, 0.0 7,-0.0 0.000 360.0 360.0 360.0 130.1 5.3 19.2 9.8 2 2 A I - 0 0 85 2,-0.0 2,-0.4 5,-0.0 7,-0.4 -0.762 360.0-139.3-126.2 167.0 8.8 18.5 8.6 3 3 A D - 0 0 121 -2,-0.3 2,-0.7 5,-0.1 5,-0.2 -0.961 20.3-178.2-124.5 113.6 10.7 16.9 5.7 4 4 A L B > S-A 7 0A 23 3,-2.9 3,-1.5 -2,-0.4 35,-0.1 -0.922 76.4 -32.9-119.2 109.3 13.7 15.0 6.7 5 5 A a T 3 S- 0 0 7 -2,-0.7 34,-2.6 1,-0.3 38,-0.2 0.840 126.0 -46.2 54.3 37.7 15.5 13.6 3.8 6 6 A G T 3 S+ 0 0 17 1,-0.3 2,-0.4 32,-0.2 -1,-0.3 0.551 117.4 108.3 92.4 -2.4 12.1 13.1 2.0 7 7 A M B < -A 4 0A 4 -3,-1.5 -3,-2.9 32,-0.1 -1,-0.3 -0.943 59.0-140.0-115.8 137.6 10.3 11.6 4.9 8 8 A S > - 0 0 39 -2,-0.4 4,-2.6 -5,-0.2 5,-0.2 -0.409 34.1-103.8 -80.6 169.4 7.6 13.2 7.0 9 9 A Q H > S+ 0 0 97 -7,-0.4 4,-2.7 1,-0.2 5,-0.2 0.925 124.2 54.7 -58.1 -40.2 7.4 12.8 10.8 10 10 A D H > S+ 0 0 110 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.864 109.6 47.0 -60.3 -38.6 4.5 10.3 10.2 11 11 A E H > S+ 0 0 42 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.889 109.3 51.3 -75.8 -38.8 6.7 8.2 7.9 12 12 A L H X S+ 0 0 57 -4,-2.6 4,-1.9 1,-0.2 -2,-0.2 0.945 111.8 49.0 -60.9 -45.1 9.7 8.2 10.2 13 13 A N H < S+ 0 0 96 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.884 107.4 55.9 -60.5 -36.1 7.3 7.0 13.0 14 14 A E H < S+ 0 0 68 -4,-1.8 14,-0.4 1,-0.2 17,-0.3 0.896 114.6 39.2 -60.1 -40.3 6.0 4.3 10.6 15 15 A b H >X S+ 0 0 9 -4,-2.0 3,-1.5 1,-0.2 4,-0.6 0.735 92.8 90.2 -81.0 -22.4 9.5 3.1 10.1 16 16 A K G >< S+ 0 0 80 -4,-1.9 3,-1.1 1,-0.3 4,-0.3 0.786 83.3 52.9 -43.4 -48.3 10.7 3.5 13.7 17 17 A P G >4 S+ 0 0 58 0, 0.0 8,-1.6 0, 0.0 3,-0.6 0.834 104.8 57.0 -66.8 -22.1 9.6 -0.1 14.9 18 18 A A G <4 S+ 0 0 4 -3,-1.5 -2,-0.2 -4,-0.2 -3,-0.1 0.601 114.5 37.6 -85.1 -4.0 11.6 -1.6 12.0 19 19 A V G << S+ 0 0 15 -3,-1.1 39,-3.7 -4,-0.6 43,-0.3 0.222 85.3 128.6-123.8 11.6 14.8 0.1 13.2 20 20 A S B < -B 57 0B 21 -3,-0.6 37,-0.2 -4,-0.3 36,-0.1 -0.498 55.8-142.0 -75.6 140.0 14.4 -0.1 16.9 21 21 A K S S+ 0 0 120 35,-2.7 2,-0.5 -2,-0.2 -1,-0.1 0.913 90.9 57.5 -58.7 -46.0 17.3 -1.6 18.9 22 22 A E S S- 0 0 157 34,-0.3 -2,-0.1 1,-0.2 -1,-0.1 -0.775 127.7 -20.3 -98.0 124.8 14.9 -3.3 21.2 23 23 A N S S- 0 0 136 -2,-0.5 -1,-0.2 1,-0.1 -2,-0.1 0.862 78.6-167.6 49.9 56.3 12.4 -5.7 19.8 24 24 A P - 0 0 57 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.196 3.2-151.7 -67.2 160.7 12.4 -4.6 16.2 25 25 A T - 0 0 86 -8,-1.6 -5,-0.1 1,-0.0 3,-0.1 -0.877 29.5 -78.6-131.3 167.7 9.7 -5.8 13.8 26 26 A S - 0 0 97 -2,-0.3 2,-0.1 1,-0.1 -1,-0.0 -0.292 63.4 -93.7 -64.4 142.9 9.4 -6.5 10.1 27 27 A P - 0 0 21 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.386 39.2-122.8 -65.4 141.0 8.9 -3.2 8.1 28 28 A S > - 0 0 36 -14,-0.4 4,-2.5 1,-0.1 5,-0.2 -0.411 20.7-112.2 -75.9 158.3 5.4 -2.2 7.4 29 29 A Q H > S+ 0 0 130 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.928 118.7 52.2 -51.6 -52.8 4.1 -1.6 3.9 30 30 A P H > S+ 0 0 76 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.886 109.3 51.8 -55.5 -34.7 3.7 2.2 4.5 31 31 A b H > S+ 0 0 0 -17,-0.3 4,-2.1 1,-0.2 -2,-0.2 0.956 111.7 44.5 -63.9 -51.3 7.3 2.3 5.8 32 32 A c H X S+ 0 0 13 -4,-2.5 4,-0.8 1,-0.2 -1,-0.2 0.875 113.0 51.6 -63.7 -37.1 8.7 0.6 2.7 33 33 A T H >< S+ 0 0 62 -4,-2.8 3,-0.8 -5,-0.2 4,-0.2 0.901 108.6 50.4 -66.5 -39.7 6.6 2.7 0.4 34 34 A A H >< S+ 0 0 2 -4,-2.1 3,-2.3 -5,-0.2 -1,-0.2 0.908 102.5 61.0 -63.6 -39.9 7.7 6.0 2.0 35 35 A L H >< S+ 0 0 11 -4,-2.1 3,-1.5 1,-0.3 -1,-0.2 0.754 87.2 74.9 -63.5 -19.5 11.3 4.9 1.6 36 36 A Q T << S+ 0 0 132 -4,-0.8 -1,-0.3 -3,-0.8 -2,-0.2 0.667 105.6 36.1 -62.7 -19.2 10.8 4.8 -2.2 37 37 A H T < S+ 0 0 109 -3,-2.3 -1,-0.3 -4,-0.2 2,-0.2 0.128 96.6 112.4-119.0 21.3 10.9 8.7 -2.0 38 38 A A < - 0 0 19 -3,-1.5 2,-0.8 -4,-0.1 -32,-0.2 -0.586 67.7-126.6 -90.8 156.1 13.6 9.0 0.7 39 39 A D > - 0 0 86 -34,-2.6 4,-2.5 -2,-0.2 5,-0.1 -0.872 22.1-169.9-104.0 103.2 17.1 10.4 0.1 40 40 A F H > S+ 0 0 37 -2,-0.8 4,-2.7 1,-0.2 -1,-0.2 0.858 84.1 52.5 -66.0 -41.4 19.4 7.7 1.5 41 41 A A H > S+ 0 0 74 2,-0.2 4,-0.8 1,-0.2 -1,-0.2 0.857 110.9 50.2 -60.2 -36.6 22.6 9.8 1.3 42 42 A a H >4 S+ 0 0 48 2,-0.2 3,-1.2 1,-0.2 4,-0.3 0.960 110.3 49.9 -63.4 -45.3 20.8 12.5 3.3 43 43 A L H >< S+ 0 0 48 -4,-2.5 3,-2.4 1,-0.3 -2,-0.2 0.886 102.5 60.3 -63.2 -41.2 19.7 9.9 5.9 44 44 A d H >< S+ 0 0 23 -4,-2.7 3,-1.9 1,-0.3 -1,-0.3 0.758 91.1 71.2 -53.7 -29.2 23.2 8.6 6.2 45 45 A G T << S+ 0 0 67 -3,-1.2 3,-0.3 -4,-0.8 -1,-0.3 0.645 92.9 56.5 -62.5 -13.3 24.2 12.1 7.4 46 46 A Y T X S+ 0 0 81 -3,-2.4 3,-2.4 -4,-0.3 -1,-0.3 0.354 71.4 111.4 -99.0 3.9 22.3 11.3 10.6 47 47 A K T < S+ 0 0 92 -3,-1.9 -1,-0.2 1,-0.3 -2,-0.1 0.794 87.8 33.9 -49.1 -33.1 24.4 8.2 11.4 48 48 A N T 3 S+ 0 0 143 -3,-0.3 -1,-0.3 -4,-0.2 -2,-0.1 0.260 88.9 132.1-108.8 13.4 26.0 9.9 14.4 49 49 A S X> - 0 0 27 -3,-2.4 3,-1.9 1,-0.1 4,-0.7 -0.378 63.4-130.4 -68.0 136.0 23.1 12.1 15.5 50 50 A P H 3> S+ 0 0 108 0, 0.0 4,-2.2 0, 0.0 3,-0.2 0.725 102.5 77.8 -52.1 -21.7 22.1 12.1 19.1 51 51 A W H 3> S+ 0 0 137 1,-0.2 4,-2.6 2,-0.2 6,-0.3 0.800 82.5 62.7 -60.4 -29.5 18.6 11.4 17.9 52 52 A L H <>>S+ 0 0 36 -3,-1.9 5,-2.3 -6,-0.3 4,-0.7 0.960 108.1 43.1 -63.2 -44.8 19.5 7.7 17.3 53 53 A G H ><5S+ 0 0 59 -4,-0.7 3,-1.0 1,-0.2 -1,-0.2 0.950 113.9 50.3 -62.1 -48.7 20.1 7.3 20.9 54 54 A S H 3<5S+ 0 0 96 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.879 118.0 38.2 -55.9 -39.8 17.0 9.3 22.0 55 55 A F H 3<5S- 0 0 110 -4,-2.6 -1,-0.2 -5,-0.1 -2,-0.2 0.346 111.0-116.5 -97.6 1.7 14.7 7.4 19.7 56 56 A G T <<5 + 0 0 29 -3,-1.0 -35,-2.7 -4,-0.7 2,-0.4 0.773 54.6 166.4 66.5 36.0 16.3 3.9 20.3 57 57 A V B < -B 20 0B 17 -5,-2.3 -37,-0.2 -6,-0.3 -1,-0.2 -0.650 32.7-140.5 -85.3 133.4 17.3 3.5 16.7 58 58 A D > - 0 0 30 -39,-3.7 4,-2.2 -2,-0.4 5,-0.2 -0.787 4.7-153.8 -91.2 117.1 19.8 0.9 15.7 59 59 A P H > S+ 0 0 44 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.907 93.8 52.8 -61.8 -31.1 22.1 2.3 13.0 60 60 A E H > S+ 0 0 156 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.925 111.8 44.0 -66.4 -47.5 22.8 -1.3 11.6 61 61 A L H > S+ 0 0 46 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.866 112.3 53.4 -63.7 -36.2 19.1 -2.1 11.2 62 62 A A H >< S+ 0 0 37 -4,-2.2 3,-1.5 -43,-0.3 -2,-0.2 0.956 107.8 50.5 -63.8 -45.1 18.5 1.3 9.7 63 63 A S H 3< S+ 0 0 40 -4,-2.7 4,-0.3 1,-0.3 -1,-0.2 0.843 112.9 48.8 -56.1 -35.9 21.3 0.7 7.2 64 64 A A H 3X S+ 0 0 43 -4,-1.6 4,-2.2 1,-0.2 -1,-0.3 0.518 86.5 89.6 -83.1 -9.1 19.6 -2.6 6.4 65 65 A L H S+ 0 0 5 0, 0.0 5,-2.4 0, 0.0 4,-0.2 0.923 111.2 47.2 -49.0 -47.8 16.0 -0.5 2.2 67 67 A K H >45S+ 0 0 176 -4,-0.3 3,-2.2 1,-0.2 -2,-0.2 0.937 110.0 54.3 -57.9 -42.2 17.2 -4.1 1.4 68 68 A Q H 3<5S+ 0 0 101 -4,-2.2 -1,-0.2 1,-0.3 -3,-0.1 0.860 107.2 51.7 -60.1 -31.8 14.5 -5.4 3.8 69 69 A c T 3<5S- 0 0 25 -4,-2.4 -1,-0.3 -3,-0.2 -2,-0.2 0.432 118.2-113.2 -85.3 -0.6 12.0 -3.4 1.8 70 70 A G T < 5 + 0 0 66 -3,-2.2 -3,-0.2 1,-0.2 -2,-0.1 0.681 62.4 154.6 77.7 17.3 13.2 -4.9 -1.5 71 71 A L < - 0 0 42 -5,-2.4 -1,-0.2 -6,-0.2 -35,-0.0 -0.426 45.0-137.8 -73.4 156.9 14.5 -1.7 -2.8 72 72 A A S S+ 0 0 102 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 0.764 85.2 63.6 -89.7 -31.0 17.3 -2.0 -5.4 73 73 A N - 0 0 125 -7,-0.1 -2,-0.1 -3,-0.0 -3,-0.0 -0.640 68.8-164.5 -97.4 155.3 19.4 0.7 -3.9 74 74 A A - 0 0 60 -2,-0.2 2,-0.5 -8,-0.1 -10,-0.1 -0.972 29.5 -92.1-141.3 150.3 20.9 0.6 -0.5 75 75 A P - 0 0 19 0, 0.0 2,-1.5 0, 0.0 -8,-0.0 -0.526 24.9-141.8 -77.2 117.5 22.4 3.1 1.9 76 76 A T 0 0 139 -2,-0.5 -13,-0.0 0, 0.0 -35,-0.0 0.150 360.0 360.0 -64.4 23.5 26.2 3.5 1.6 77 77 A d 0 0 69 -2,-1.5 -32,-0.0 -14,-0.1 -33,-0.0 -0.880 360.0 360.0-128.6 360.0 26.5 3.9 5.4