==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 31-JAN-08 2RNQ . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.OKUDA,Y.NISHIMURA . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5504.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 29.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 378 A E 0 0 133 0, 0.0 3,-0.2 0, 0.0 11,-0.0 0.000 360.0 360.0 360.0-175.1 6.7 -4.6 -11.9 2 379 A E + 0 0 85 1,-0.2 2,-2.1 2,-0.1 3,-0.4 0.949 360.0 59.3 -71.8 -50.2 4.2 -4.6 -14.9 3 380 A D S S+ 0 0 157 1,-0.2 -1,-0.2 4,-0.1 4,-0.1 -0.540 74.2 117.8 -81.4 75.6 6.5 -6.3 -17.3 4 381 A E S S- 0 0 134 -2,-2.1 -1,-0.2 2,-0.5 -2,-0.1 0.815 86.2 -76.4-103.4 -67.6 6.9 -9.5 -15.2 5 382 A E S S+ 0 0 188 1,-0.7 2,-0.1 -3,-0.4 -3,-0.0 0.125 103.5 65.8-163.5 -62.5 5.6 -12.5 -17.1 6 383 A E S S- 0 0 150 1,-0.1 -1,-0.7 -3,-0.0 2,-0.5 -0.393 92.8 -94.5 -76.8 155.4 1.8 -12.7 -17.1 7 384 A D + 0 0 147 -3,-0.1 2,-0.3 -2,-0.1 -1,-0.1 -0.607 69.2 127.4 -75.6 118.5 -0.3 -10.1 -18.9 8 385 A D - 0 0 121 -2,-0.5 2,-0.2 -6,-0.2 3,-0.1 -0.910 34.6-154.4-156.0-179.5 -1.4 -7.4 -16.5 9 386 A E + 0 0 133 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.799 57.1 75.1-149.5-172.1 -1.5 -3.6 -16.0 10 387 A F - 0 0 174 -2,-0.2 -1,-0.1 1,-0.2 2,-0.1 0.913 65.7-150.9 63.2 45.9 -1.6 -0.9 -13.3 11 388 A E - 0 0 103 -3,-0.1 2,-0.4 2,-0.1 -1,-0.2 -0.274 20.2-178.5 -49.5 117.9 2.0 -1.3 -12.3 12 389 A E + 0 0 134 -3,-0.1 -1,-0.0 1,-0.1 -3,-0.0 -0.975 24.8 174.9-126.1 139.4 2.2 -0.2 -8.6 13 390 A V + 0 0 114 -2,-0.4 2,-0.5 -12,-0.0 -1,-0.1 0.183 51.8 104.7-125.8 12.6 5.3 -0.1 -6.4 14 391 A A - 0 0 50 1,-0.2 -2,-0.0 4,-0.0 0, 0.0 -0.856 51.6-162.1-102.0 127.3 3.8 1.4 -3.4 15 392 A D S S+ 0 0 167 -2,-0.5 -1,-0.2 1,-0.2 -3,-0.0 0.990 83.4 32.6 -66.9 -62.8 3.1 -0.8 -0.3 16 393 A D S S- 0 0 24 12,-0.0 2,-0.7 3,-0.0 -1,-0.2 -0.819 89.5-122.3 -99.4 133.3 0.6 1.6 1.4 17 394 A P - 0 0 46 0, 0.0 11,-0.8 0, 0.0 2,-0.4 -0.648 27.4-126.6 -77.0 114.7 -1.7 3.8 -0.8 18 395 A I E -A 27 0A 109 -2,-0.7 2,-0.3 9,-0.2 9,-0.2 -0.462 32.1-169.9 -67.0 119.5 -1.1 7.4 0.2 19 396 A V E -A 26 0A 7 7,-2.3 7,-3.1 -2,-0.4 2,-0.5 -0.834 18.9-121.7-113.1 147.8 -4.4 8.9 1.0 20 397 A M E -A 25 0A 92 -2,-0.3 2,-0.5 5,-0.2 29,-0.2 -0.780 23.2-174.2 -96.7 129.7 -5.2 12.5 1.6 21 398 A V E > S-A 24 0A 2 3,-3.2 3,-1.0 -2,-0.5 20,-0.1 -0.975 76.7 -18.4-123.9 113.4 -6.7 13.7 4.8 22 399 A A T 3 S- 0 0 26 -2,-0.5 -1,-0.1 1,-0.3 19,-0.1 0.762 131.4 -49.4 63.6 26.9 -7.7 17.4 5.1 23 400 A G T 3 S+ 0 0 55 1,-0.3 -1,-0.3 19,-0.0 -3,-0.1 0.579 118.5 108.4 91.0 10.3 -5.5 18.1 2.1 24 401 A R E < -A 21 0A 148 -3,-1.0 -3,-3.2 -5,-0.0 2,-0.6 -0.938 68.5-121.2-121.9 144.4 -2.4 16.3 3.4 25 402 A P E +A 20 0A 84 0, 0.0 2,-0.2 0, 0.0 -5,-0.2 -0.747 43.3 152.1 -89.8 118.1 -0.9 13.0 2.2 26 403 A F E -A 19 0A 67 -7,-3.1 -7,-2.3 -2,-0.6 2,-0.2 -0.761 50.4 -73.7-130.4 178.7 -0.7 10.2 4.8 27 404 A S E > -A 18 0A 47 -2,-0.2 4,-1.9 -9,-0.2 -9,-0.2 -0.537 32.2-136.7 -77.8 142.0 -0.7 6.4 4.8 28 405 A Y H > S+ 0 0 23 -11,-0.8 4,-2.5 1,-0.2 5,-0.2 0.917 105.9 55.2 -63.7 -43.9 -4.0 4.7 4.1 29 406 A S H 4 S+ 0 0 71 1,-0.2 4,-0.3 2,-0.2 -1,-0.2 0.856 107.7 52.1 -57.5 -34.5 -3.4 2.1 6.8 30 407 A E H >> S+ 0 0 78 1,-0.2 3,-1.2 2,-0.2 4,-0.9 0.929 109.5 46.8 -67.6 -46.3 -3.0 5.1 9.2 31 408 A V H 3< S+ 0 0 1 -4,-1.9 7,-0.4 1,-0.3 3,-0.3 0.845 106.7 58.1 -66.7 -33.2 -6.2 6.7 8.2 32 409 A S T 3< S+ 0 0 42 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.582 114.4 39.3 -73.0 -8.6 -8.1 3.4 8.5 33 410 A Q T <4 S+ 0 0 158 -3,-1.2 -1,-0.2 -4,-0.3 -2,-0.2 0.460 108.1 69.4-114.4 -9.2 -6.9 3.3 12.1 34 411 A R >X + 0 0 102 -4,-0.9 4,-1.6 -3,-0.3 3,-1.0 -0.867 52.0 179.6-117.4 98.1 -7.4 7.0 12.8 35 412 A P H 3> S+ 0 0 92 0, 0.0 4,-3.2 0, 0.0 5,-0.3 0.909 82.5 66.0 -60.8 -38.4 -11.0 8.2 12.9 36 413 A E H 34 S+ 0 0 103 1,-0.2 4,-0.2 2,-0.2 -5,-0.1 0.768 105.0 47.9 -55.5 -24.4 -9.9 11.8 13.6 37 414 A L H X> S+ 0 0 31 -3,-1.0 4,-1.3 2,-0.2 3,-0.9 0.933 111.2 44.0 -83.3 -52.6 -8.5 11.7 10.2 38 415 A V H 3< S+ 0 0 24 -4,-1.6 -2,-0.2 -7,-0.4 -1,-0.1 0.852 112.9 55.4 -62.8 -30.7 -11.4 10.3 8.2 39 416 A A T 3< S+ 0 0 82 -4,-3.2 -1,-0.3 1,-0.2 -2,-0.2 0.715 109.4 46.7 -72.3 -21.1 -13.6 12.7 10.1 40 417 A Q T <4 S+ 0 0 121 -3,-0.9 -1,-0.2 -5,-0.3 -2,-0.2 0.630 91.3 110.1 -90.7 -20.4 -11.3 15.4 8.9 41 418 A M S < S- 0 0 14 -4,-1.3 -20,-0.1 -20,-0.1 -3,-0.0 -0.306 70.9-124.9 -57.5 135.6 -11.5 14.0 5.4 42 419 A T > - 0 0 56 1,-0.1 4,-3.6 4,-0.0 5,-0.4 -0.242 32.1 -97.1 -73.6 168.8 -13.4 16.2 2.9 43 420 A P H > S+ 0 0 83 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.923 129.6 47.5 -53.3 -42.3 -16.4 14.6 1.0 44 421 A E H > S+ 0 0 135 2,-0.2 4,-1.3 1,-0.2 5,-0.1 0.917 115.8 43.2 -65.0 -46.1 -13.9 14.1 -1.9 45 422 A E H > S+ 0 0 21 2,-0.2 4,-3.3 1,-0.2 5,-0.3 0.939 116.2 45.9 -67.6 -49.1 -11.2 12.6 0.3 46 423 A K H X S+ 0 0 62 -4,-3.6 4,-3.7 1,-0.2 5,-0.3 0.938 113.0 49.4 -60.7 -48.3 -13.6 10.4 2.4 47 424 A E H X S+ 0 0 91 -4,-2.4 4,-1.2 -5,-0.4 -1,-0.2 0.812 115.5 45.8 -61.9 -29.4 -15.4 9.1 -0.7 48 425 A A H X S+ 0 0 50 -4,-1.3 4,-2.2 -5,-0.2 -2,-0.2 0.948 117.2 41.6 -76.7 -50.6 -12.0 8.4 -2.3 49 426 A Y H X S+ 0 0 30 -4,-3.3 4,-2.6 1,-0.2 -2,-0.2 0.917 117.6 48.1 -60.5 -46.3 -10.5 6.7 0.8 50 427 A I H X S+ 0 0 70 -4,-3.7 4,-2.4 -5,-0.3 -1,-0.2 0.851 110.7 51.6 -65.2 -35.3 -13.7 4.9 1.4 51 428 A A H X S+ 0 0 33 -4,-1.2 4,-2.0 -5,-0.3 -1,-0.2 0.875 109.8 50.5 -68.7 -37.4 -13.9 3.8 -2.2 52 429 A M H X S+ 0 0 56 -4,-2.2 4,-0.8 2,-0.2 -2,-0.2 0.938 111.8 46.8 -64.1 -48.5 -10.4 2.5 -1.9 53 430 A G H >X S+ 0 0 8 -4,-2.6 3,-0.9 1,-0.2 4,-0.6 0.900 109.3 54.1 -61.1 -43.7 -11.2 0.5 1.2 54 431 A Q H >< S+ 0 0 100 -4,-2.4 3,-1.8 1,-0.3 -1,-0.2 0.929 105.6 52.7 -56.8 -46.7 -14.3 -0.9 -0.4 55 432 A R H 3< S+ 0 0 151 -4,-2.0 3,-0.4 1,-0.3 -1,-0.3 0.691 104.8 57.8 -64.1 -18.3 -12.4 -2.2 -3.4 56 433 A M H << S+ 0 0 90 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.2 0.600 114.0 36.9 -87.0 -12.6 -10.0 -3.9 -0.9 57 434 A F S << S+ 0 0 141 -3,-1.8 -2,-0.2 -4,-0.6 -1,-0.2 0.077 90.5 91.8-125.0 22.1 -12.9 -5.9 0.6 58 435 A E S S+ 0 0 98 -3,-0.4 2,-0.3 1,-0.2 -3,-0.1 0.131 82.3 60.3-102.5 19.6 -14.9 -6.5 -2.5 59 436 A D + 0 0 107 -3,-0.1 2,-0.4 0, 0.0 -1,-0.2 -0.780 65.0 156.9-149.8 93.7 -13.2 -9.8 -3.1 60 437 A L - 0 0 100 -2,-0.3 -3,-0.0 -3,-0.1 0, 0.0 -0.957 25.4-177.5-124.0 143.1 -13.5 -12.4 -0.4 61 438 A F 0 0 175 -2,-0.4 -1,-0.1 1,-0.0 0, 0.0 0.162 360.0 360.0-120.0 12.3 -13.2 -16.2 -0.6 62 439 A E 0 0 208 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 0.829 360.0 360.0-100.8 360.0 -14.1 -16.8 3.1