==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE(ENDORIBONUCLEASE) 06-JUL-88 2RNT . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR W.SAENGER,J.KOEPKE,M.MASLOWSKA,U.HEINEMANN . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5512.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 56.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 152 0, 0.0 2,-0.4 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 156.6 5.8 55.4 5.5 2 2 A a - 0 0 44 1,-0.2 10,-0.2 10,-0.1 3,-0.2 -0.734 360.0-156.9 -91.9 138.5 7.5 52.4 7.0 3 3 A D S S+ 0 0 85 8,-1.3 2,-0.3 -2,-0.4 9,-0.2 0.840 93.9 16.7 -72.9 -34.2 6.3 48.9 6.3 4 4 A Y E -A 11 0A 59 7,-2.3 7,-2.6 100,-0.1 2,-0.5 -0.998 69.6-162.7-136.3 132.5 8.1 47.9 9.6 5 5 A T E -A 10 0A 47 -2,-0.3 99,-2.3 5,-0.2 2,-0.8 -0.982 5.3-175.7-119.8 117.2 9.3 50.2 12.3 6 6 A b E > -A 9 0A 0 3,-2.6 3,-2.3 -2,-0.5 2,-0.7 -0.867 68.9 -60.4-111.6 87.0 11.9 48.7 14.7 7 7 A G T 3 S- 0 0 43 -2,-0.8 97,-0.1 1,-0.3 84,-0.0 -0.642 122.0 -17.9 76.6-118.4 12.4 51.5 17.3 8 8 A S T 3 S+ 0 0 119 -2,-0.7 2,-0.4 -3,-0.1 -1,-0.3 0.387 116.4 104.8 -99.3 -6.7 13.7 54.3 15.1 9 9 A N E < -A 6 0A 50 -3,-2.3 -3,-2.6 -7,-0.0 2,-0.5 -0.704 55.5-157.9 -88.0 130.7 14.7 52.0 12.2 10 10 A a E +A 5 0A 71 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.934 12.7 178.7-108.1 123.9 12.4 52.1 9.2 11 11 A Y E -A 4 0A 5 -7,-2.6 -7,-2.3 -2,-0.5 -8,-1.3 -0.947 15.6-148.6-127.1 148.5 12.2 49.3 6.7 12 12 A S >> - 0 0 34 -2,-0.4 4,-1.8 -9,-0.2 3,-0.5 -0.598 38.8 -99.1-104.2 170.4 10.1 48.7 3.6 13 13 A S H 3> S+ 0 0 59 1,-0.2 4,-2.7 -2,-0.2 5,-0.2 0.880 124.3 56.7 -55.0 -38.6 9.0 45.3 2.3 14 14 A S H 3> S+ 0 0 75 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.891 102.7 54.1 -63.4 -40.0 11.8 45.3 -0.2 15 15 A D H <> S+ 0 0 62 -3,-0.5 4,-2.0 1,-0.2 -1,-0.2 0.896 112.0 45.2 -59.8 -44.6 14.4 45.8 2.6 16 16 A V H X S+ 0 0 2 -4,-1.8 4,-3.0 2,-0.2 -2,-0.2 0.924 111.0 51.9 -65.2 -50.9 13.0 42.7 4.3 17 17 A S H X S+ 0 0 72 -4,-2.7 4,-2.8 1,-0.2 -2,-0.2 0.900 110.8 48.2 -55.1 -47.4 12.8 40.6 1.1 18 18 A T H X S+ 0 0 82 -4,-2.3 4,-1.6 2,-0.2 -1,-0.2 0.913 114.5 45.7 -61.4 -44.0 16.4 41.2 0.3 19 19 A A H X S+ 0 0 6 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.929 113.9 48.9 -62.3 -49.7 17.5 40.4 3.9 20 20 A Q H X S+ 0 0 16 -4,-3.0 4,-3.1 1,-0.2 5,-0.3 0.909 107.2 54.9 -57.0 -47.2 15.4 37.3 4.0 21 21 A A H X S+ 0 0 59 -4,-2.8 4,-1.9 1,-0.2 -1,-0.2 0.916 109.4 47.6 -56.2 -43.9 16.7 36.0 0.7 22 22 A A H X S+ 0 0 11 -4,-1.6 4,-1.8 1,-0.2 -1,-0.2 0.915 114.3 46.9 -60.6 -46.4 20.3 36.3 1.9 23 23 A G H X S+ 0 0 0 -4,-2.1 4,-2.3 1,-0.2 -2,-0.2 0.885 110.6 50.6 -64.9 -45.7 19.5 34.5 5.1 24 24 A Y H X S+ 0 0 40 -4,-3.1 4,-2.9 2,-0.2 -1,-0.2 0.874 107.5 54.5 -64.5 -37.3 17.6 31.7 3.5 25 25 A K H X S+ 0 0 97 -4,-1.9 4,-1.8 -5,-0.3 -2,-0.2 0.927 110.0 45.4 -62.8 -46.2 20.4 31.0 1.0 26 26 A L H X>S+ 0 0 17 -4,-1.8 5,-2.5 2,-0.2 4,-1.1 0.929 112.4 54.4 -61.9 -43.0 23.0 30.6 3.8 27 27 A H H ><5S+ 0 0 42 -4,-2.3 3,-1.0 1,-0.3 -2,-0.2 0.935 110.4 43.4 -54.7 -56.1 20.4 28.4 5.6 28 28 A E H 3<5S+ 0 0 126 -4,-2.9 -1,-0.3 1,-0.2 -2,-0.2 0.780 114.3 52.9 -63.8 -25.9 19.9 26.1 2.6 29 29 A D H 3<5S- 0 0 93 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.606 108.5-125.1 -84.6 -11.8 23.7 26.1 2.1 30 30 A G T <<5 + 0 0 72 -4,-1.1 2,-0.3 -3,-1.0 -3,-0.2 0.832 68.7 129.1 68.5 37.7 24.3 25.1 5.7 31 31 A E < - 0 0 108 -5,-2.5 -1,-0.3 -6,-0.1 2,-0.3 -0.839 39.2-164.6-122.1 158.7 26.6 28.1 6.1 32 32 A T - 0 0 75 -2,-0.3 2,-0.3 -3,-0.1 5,-0.1 -0.938 5.8-154.3-139.1 164.2 26.7 30.9 8.7 33 33 A V B > +B 38 0B 40 5,-2.8 5,-2.5 -2,-0.3 37,-0.2 -0.980 52.6 28.7-140.5 149.2 28.3 34.3 9.2 34 34 A G T > 5S- 0 0 28 -2,-0.3 3,-1.9 35,-0.3 38,-0.1 0.139 89.8 -77.0 89.2 156.0 29.3 36.3 12.3 35 35 A S T 3 5S+ 0 0 127 1,-0.3 -1,-0.2 36,-0.2 37,-0.1 0.711 130.9 52.7 -64.1 -23.8 30.4 35.4 15.7 36 36 A N T 3 5S- 0 0 106 -3,-0.1 -1,-0.3 4,-0.0 -2,-0.1 0.186 113.1-119.3 -96.6 12.1 26.8 34.6 16.7 37 37 A S T < 5 - 0 0 55 -3,-1.9 -3,-0.2 1,-0.2 -2,-0.1 0.950 39.2-131.7 51.9 68.4 26.4 32.2 13.7 38 38 A Y B + 0 0 32 1,-0.1 3,-1.5 2,-0.1 -1,-0.1 0.844 45.3 158.4 68.6 36.8 10.1 31.9 20.0 45 45 A Y T 3 S+ 0 0 198 1,-0.3 -1,-0.1 2,-0.1 54,-0.0 0.886 71.6 64.0 -58.0 -33.3 10.5 32.0 23.7 46 46 A E T 3 S- 0 0 56 1,-0.1 -1,-0.3 55,-0.0 -2,-0.1 0.764 104.7-133.9 -64.1 -23.7 8.6 35.4 23.4 47 47 A G < - 0 0 54 -3,-1.5 -2,-0.1 1,-0.1 -1,-0.1 0.915 35.1-176.3 73.5 42.5 5.6 33.5 22.2 48 48 A F - 0 0 33 1,-0.1 2,-1.1 53,-0.0 -1,-0.1 -0.265 35.9-103.0 -73.2 164.4 4.8 35.8 19.2 49 49 A D + 0 0 117 2,-0.0 -1,-0.1 -2,-0.0 2,-0.1 -0.269 49.2 171.6 -69.6 31.2 1.8 35.4 16.9 50 50 A F - 0 0 26 -2,-1.1 38,-0.1 1,-0.1 37,-0.1 -0.459 23.7-161.3 -63.8 131.2 3.4 33.9 13.9 51 51 A S S S+ 0 0 119 36,-0.3 2,-0.3 -2,-0.1 -1,-0.1 0.121 72.7 71.6 -95.1 13.7 0.9 32.8 11.3 52 52 A V S S- 0 0 23 35,-0.1 2,-0.1 33,-0.1 -2,-0.0 -0.909 90.1-101.3-123.7 151.4 3.5 30.5 9.6 53 53 A S - 0 0 72 -2,-0.3 29,-0.3 1,-0.1 30,-0.2 -0.317 46.5 -83.9 -80.3 157.1 4.8 27.2 11.0 54 54 A S S S+ 0 0 80 27,-0.1 2,-0.2 -4,-0.1 -1,-0.1 -0.278 80.4 87.3 -82.7 170.9 8.1 26.6 12.8 55 55 A P - 0 0 47 0, 0.0 27,-0.8 0, 0.0 2,-0.3 0.549 65.7-166.1 -70.8 161.6 11.0 26.0 12.9 56 56 A Y E -CD 42 81C 23 -14,-0.6 -14,-2.5 25,-0.2 2,-0.3 -0.827 10.7-161.0-117.7 153.1 12.0 29.6 12.6 57 57 A Y E -CD 41 80C 32 23,-2.6 23,-2.2 -2,-0.3 2,-0.3 -0.968 9.4-143.7-134.3 146.9 15.4 31.2 11.8 58 58 A E E +CD 40 79C 15 -18,-2.3 -18,-1.4 -2,-0.3 21,-0.2 -0.900 16.7 177.3-118.7 149.9 16.6 34.7 12.5 59 59 A W E - D 0 78C 2 19,-1.7 19,-3.0 -2,-0.3 -36,-0.1 -0.968 35.5-102.7-148.8 135.2 18.9 36.9 10.4 60 60 A P E - D 0 77C 0 0, 0.0 2,-0.4 0, 0.0 8,-0.4 -0.195 24.8-159.9 -61.4 149.8 20.0 40.5 11.0 61 61 A I - 0 0 8 15,-1.5 15,-0.4 12,-0.3 2,-0.4 -0.994 19.9-144.0-127.1 124.8 18.3 43.3 8.9 62 62 A L > - 0 0 36 4,-0.6 3,-1.6 -2,-0.4 12,-0.1 -0.775 16.2-141.3-102.3 141.6 20.5 46.4 8.9 63 63 A S T 3 S+ 0 0 83 -2,-0.4 -53,-0.1 1,-0.3 -1,-0.1 0.742 100.4 68.3 -69.1 -17.8 19.4 50.0 9.0 64 64 A S T 3 S- 0 0 75 2,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.585 110.1-119.9 -73.8 -11.2 22.3 50.9 6.5 65 65 A G S < S+ 0 0 55 -3,-1.6 2,-0.1 1,-0.3 -2,-0.1 0.254 73.5 126.5 87.0 -4.5 20.5 48.9 3.8 66 66 A D - 0 0 115 1,-0.1 -4,-0.6 -5,-0.0 -1,-0.3 -0.480 67.9-109.1 -83.0 159.6 23.4 46.5 3.4 67 67 A V - 0 0 65 -2,-0.1 -6,-0.1 -3,-0.1 2,-0.1 -0.682 45.2 -99.5 -84.0 138.8 23.0 42.7 3.7 68 68 A Y + 0 0 8 -8,-0.4 3,-0.1 -2,-0.3 -1,-0.1 -0.366 48.0 166.3 -61.6 131.5 24.6 41.4 6.9 69 69 A S - 0 0 107 1,-0.6 -35,-0.3 -2,-0.1 2,-0.2 0.221 60.5 -65.7-131.4 13.8 28.1 39.9 6.3 70 70 A G S S+ 0 0 27 -37,-0.2 -1,-0.6 1,-0.1 2,-0.1 -0.620 91.3 81.9 124.2 175.9 29.4 39.6 9.9 71 71 A G S S- 0 0 62 -2,-0.2 -36,-0.2 -3,-0.1 -1,-0.1 -0.510 97.0 -4.0 85.1-164.1 30.4 42.1 12.6 72 72 A S - 0 0 103 1,-0.1 -2,-0.1 -2,-0.1 3,-0.1 -0.419 57.5-155.6 -64.4 128.2 27.7 43.6 14.9 73 73 A P - 0 0 29 0, 0.0 -12,-0.3 0, 0.0 3,-0.3 0.466 28.1-143.6 -81.9 -4.2 24.2 42.5 13.9 74 74 A G - 0 0 45 1,-0.2 -12,-0.1 -14,-0.1 0, 0.0 -0.237 39.2 -66.0 70.4-160.9 22.5 45.6 15.4 75 75 A A S S+ 0 0 23 -3,-0.1 17,-1.8 -69,-0.1 2,-0.3 0.659 101.5 87.8-101.3 -15.1 19.1 45.0 17.1 76 76 A D E - E 0 91C 2 -15,-0.4 -15,-1.5 -3,-0.3 2,-0.3 -0.744 48.5-176.7 -97.7 144.3 16.7 44.0 14.3 77 77 A R E -DE 60 90C 8 13,-2.9 13,-2.4 -2,-0.3 2,-0.4 -0.967 23.7-141.0-140.6 152.0 16.0 40.7 12.8 78 78 A V E -DE 59 89C 0 -19,-3.0 -19,-1.7 -2,-0.3 2,-0.5 -0.881 23.3-152.2-101.3 136.5 14.0 39.1 10.0 79 79 A V E +DE 58 88C 0 9,-2.6 8,-2.9 -2,-0.4 9,-1.5 -0.996 22.3 168.6-116.1 121.8 12.4 35.7 11.1 80 80 A F E -DE 57 86C 0 -23,-2.2 -23,-2.6 -2,-0.5 6,-0.2 -0.844 21.1-136.3-128.1 164.8 11.7 33.1 8.4 81 81 A N E > -D 56 0C 1 4,-1.7 3,-1.8 -2,-0.3 -25,-0.2 -0.400 40.8 -81.6-108.6-170.3 10.8 29.4 8.3 82 82 A E T 3 S+ 0 0 73 -27,-0.8 -26,-0.1 1,-0.3 -28,-0.1 0.749 127.4 53.7 -62.2 -27.3 11.9 26.3 6.4 83 83 A N T 3 S- 0 0 109 -30,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.183 117.9-109.1 -94.1 11.2 9.7 27.2 3.5 84 84 A N < + 0 0 61 -3,-1.8 2,-0.4 1,-0.2 -2,-0.1 0.865 70.0 149.1 62.8 36.3 11.2 30.7 3.2 85 85 A Q - 0 0 87 -32,-0.1 -4,-1.7 0, 0.0 2,-0.4 -0.830 52.9-116.1 -99.4 141.3 7.9 32.2 4.5 86 86 A L E -E 80 0C 52 -2,-0.4 -6,-0.3 -6,-0.2 3,-0.1 -0.714 30.5-178.5 -78.2 126.0 8.3 35.5 6.5 87 87 A A E - 0 0 16 -8,-2.9 -36,-0.3 -2,-0.4 2,-0.3 0.843 56.6 -66.9 -91.7 -42.3 7.2 34.9 10.1 88 88 A G E -E 79 0C 9 -9,-1.5 -9,-2.6 -38,-0.1 2,-0.4 -0.956 39.1 -95.2 172.4 179.0 7.9 38.5 11.2 89 89 A V E +E 78 0C 2 -2,-0.3 14,-2.5 14,-0.2 2,-0.3 -0.978 45.0 175.9-121.8 130.2 10.3 41.3 11.9 90 90 A I E -EF 77 102C 0 -13,-2.4 -13,-2.9 -2,-0.4 2,-0.3 -0.906 11.2-162.3-135.2 164.5 11.5 41.7 15.5 91 91 A T E -EF 76 101C 2 10,-3.0 10,-2.4 -2,-0.3 -15,-0.2 -0.980 30.9-140.7-148.1 158.3 13.9 43.8 17.5 92 92 A H S > S+ 0 0 43 -17,-1.8 3,-2.0 -2,-0.3 2,-0.2 0.533 74.3 112.4 -87.2 -13.5 15.7 44.0 20.7 93 93 A T T 3 S+ 0 0 60 1,-0.3 -86,-0.2 -18,-0.2 -2,-0.1 -0.490 88.4 8.4 -62.6 127.1 15.0 47.8 20.7 94 94 A G T 3 S+ 0 0 80 1,-0.2 2,-0.4 -2,-0.2 -1,-0.3 0.642 108.5 104.6 78.9 13.6 12.6 48.6 23.6 95 95 A A S < S- 0 0 18 -3,-2.0 -1,-0.2 4,-0.2 6,-0.1 -0.974 78.9-103.6-123.7 139.4 12.8 45.1 25.1 96 96 A S S > S- 0 0 97 -2,-0.4 3,-2.1 4,-0.1 -3,-0.0 -0.391 76.3 -32.9 -71.1 149.1 14.8 44.3 28.3 97 97 A G T 3 S- 0 0 62 1,-0.3 -2,-0.2 -2,-0.1 0, 0.0 -0.212 126.5 -20.5 52.4-127.8 18.1 42.6 27.9 98 98 A N T 3 S+ 0 0 140 2,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.065 105.2 117.1 -97.1 19.1 18.2 40.2 25.0 99 99 A N < - 0 0 84 -3,-2.1 2,-0.3 -7,-0.1 -4,-0.2 -0.380 55.4-136.0 -78.8 172.9 14.4 39.8 24.8 100 100 A F - 0 0 16 -6,-0.1 2,-0.3 -2,-0.1 -8,-0.2 -0.872 14.9-165.1-129.1 159.8 12.7 40.9 21.6 101 101 A V E -F 91 0C 56 -10,-2.4 -10,-3.0 -2,-0.3 2,-0.2 -0.880 36.6 -94.9-136.4 160.4 9.5 42.8 20.7 102 102 A E E -F 90 0C 68 -2,-0.3 -12,-0.3 -12,-0.2 2,-0.3 -0.490 31.7-118.2 -81.7 155.1 7.8 42.9 17.3 103 103 A b 0 0 11 -14,-2.5 -97,-0.2 -2,-0.2 -14,-0.2 -0.614 360.0 360.0 -82.1 146.1 8.5 45.8 14.8 104 104 A T 0 0 139 -99,-2.3 -98,-0.1 -2,-0.3 -1,-0.1 0.610 360.0 360.0-102.4 360.0 5.2 47.6 14.1