==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE(ENDORIBONUCLEASE) 31-MAY-89 3RNT . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR D.KOSTREWA,H.-W.CHOE,U.HEINEMANN,W.SAENGER . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5431.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 55.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 26.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 151 0, 0.0 2,-0.4 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 158.0 6.1 -4.8 15.2 2 2 A a - 0 0 51 1,-0.1 10,-0.2 10,-0.1 3,-0.2 -0.876 360.0-157.8-101.6 135.4 7.5 -1.7 13.7 3 3 A D S S+ 0 0 87 8,-1.7 2,-0.3 -2,-0.4 9,-0.2 0.780 91.3 11.5 -77.9 -29.3 6.1 1.7 14.1 4 4 A Y E -A 11 0A 57 7,-1.9 7,-3.1 -3,-0.1 2,-0.5 -0.987 68.7-164.8-142.2 137.9 7.7 2.8 10.8 5 5 A T E -A 10 0A 45 -2,-0.3 99,-2.1 5,-0.2 2,-0.6 -0.994 3.4-173.1-130.5 127.0 9.3 0.6 8.2 6 6 A b E > -A 9 0A 1 3,-2.5 3,-2.8 -2,-0.5 2,-0.4 -0.943 69.1 -52.3-115.4 102.7 11.6 2.0 5.5 7 7 A G T 3 S- 0 0 47 -2,-0.6 97,-0.1 1,-0.3 84,-0.0 -0.549 125.4 -20.1 69.5-121.7 12.4 -0.7 3.0 8 8 A S T 3 S+ 0 0 122 -2,-0.4 2,-0.3 -3,-0.1 -1,-0.3 0.463 116.3 105.5 -96.6 -7.9 13.7 -3.5 5.2 9 9 A N E < -A 6 0A 49 -3,-2.8 -3,-2.5 -7,-0.0 2,-0.5 -0.660 53.8-158.0 -83.7 130.2 14.5 -1.2 8.2 10 10 A a E -A 5 0A 66 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.941 10.4-174.2-108.6 130.6 12.2 -1.3 11.3 11 11 A Y E -A 4 0A 3 -7,-3.1 -7,-1.9 -2,-0.5 -8,-1.7 -0.943 14.2-146.6-123.0 141.5 12.0 1.6 13.7 12 12 A S > - 0 0 33 -2,-0.4 4,-1.7 -10,-0.2 3,-0.4 -0.589 35.3-106.8 -94.8 170.0 10.2 2.0 16.9 13 13 A S H > S+ 0 0 58 1,-0.3 4,-2.7 -2,-0.2 5,-0.2 0.878 123.3 57.3 -61.6 -42.3 8.8 5.4 18.0 14 14 A S H > S+ 0 0 78 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.859 104.0 53.1 -58.8 -33.8 11.6 5.6 20.6 15 15 A D H > S+ 0 0 51 -3,-0.4 4,-1.9 2,-0.2 -1,-0.2 0.935 112.6 44.4 -64.5 -43.0 14.2 5.2 17.7 16 16 A V H X S+ 0 0 3 -4,-1.7 4,-2.8 1,-0.2 -2,-0.2 0.910 112.8 50.4 -67.3 -47.8 12.5 8.2 15.9 17 17 A S H X S+ 0 0 71 -4,-2.7 4,-1.9 2,-0.2 -2,-0.2 0.874 111.6 48.7 -58.5 -47.2 12.3 10.3 19.1 18 18 A T H X S+ 0 0 77 -4,-2.4 4,-1.7 2,-0.2 -2,-0.2 0.925 113.6 45.2 -60.0 -53.1 16.0 9.7 19.9 19 19 A A H X S+ 0 0 7 -4,-1.9 4,-2.5 1,-0.2 5,-0.2 0.924 113.2 51.2 -61.5 -47.9 17.2 10.6 16.3 20 20 A Q H X S+ 0 0 23 -4,-2.8 4,-3.2 1,-0.2 5,-0.2 0.900 106.3 53.6 -61.2 -38.8 14.9 13.7 16.2 21 21 A A H X S+ 0 0 59 -4,-1.9 4,-2.0 1,-0.2 -1,-0.2 0.891 112.4 44.4 -61.1 -42.1 16.2 15.0 19.5 22 22 A A H X S+ 0 0 11 -4,-1.7 4,-1.5 2,-0.2 -1,-0.2 0.917 114.4 48.5 -69.1 -42.7 19.8 14.8 18.3 23 23 A G H X S+ 0 0 0 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.921 112.3 49.5 -62.8 -42.9 19.0 16.4 14.9 24 24 A Y H X S+ 0 0 36 -4,-3.2 4,-2.3 1,-0.2 -1,-0.2 0.878 106.9 54.3 -62.1 -44.5 17.0 19.2 16.6 25 25 A K H X S+ 0 0 90 -4,-2.0 4,-1.8 -5,-0.2 -1,-0.2 0.887 109.2 48.2 -62.9 -38.4 19.8 20.0 19.0 26 26 A L H X>S+ 0 0 20 -4,-1.5 5,-2.8 1,-0.2 4,-0.6 0.929 109.7 53.6 -68.0 -36.7 22.4 20.4 16.1 27 27 A H H ><5S+ 0 0 42 -4,-2.2 3,-0.8 1,-0.2 -2,-0.2 0.858 110.0 46.0 -64.1 -40.4 19.9 22.6 14.3 28 28 A E H 3<5S+ 0 0 125 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.833 112.8 51.4 -68.2 -34.2 19.6 24.9 17.5 29 29 A D H 3<5S- 0 0 106 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.469 111.3-122.0 -80.8 -5.9 23.4 25.0 17.8 30 30 A G T <<5 + 0 0 69 -3,-0.8 2,-0.3 -4,-0.6 -3,-0.2 0.849 69.2 136.5 63.4 42.2 23.8 26.0 14.1 31 31 A E < - 0 0 108 -5,-2.8 2,-0.3 -6,-0.1 -1,-0.2 -0.865 37.0-169.2-121.4 153.6 25.9 22.8 13.7 32 32 A T - 0 0 61 -2,-0.3 2,-0.3 -3,-0.1 5,-0.0 -0.865 3.7-160.1-138.3 159.2 26.2 20.1 11.2 33 33 A V B > +B 38 0B 42 5,-2.3 5,-2.7 -2,-0.3 37,-0.2 -0.973 49.9 33.9-140.2 151.5 27.9 16.6 10.9 34 34 A G T > 5S- 0 0 30 -2,-0.3 3,-1.4 35,-0.3 38,-0.1 -0.012 90.8 -77.4 90.7 162.3 28.8 14.4 8.0 35 35 A S T 3 5S+ 0 0 124 1,-0.3 -1,-0.1 36,-0.3 37,-0.1 0.781 132.8 51.2 -66.7 -27.8 30.0 15.1 4.4 36 36 A N T 3 5S- 0 0 96 -3,-0.1 -1,-0.3 4,-0.0 -2,-0.1 0.284 113.0-121.2 -95.6 15.2 26.5 15.9 3.4 37 37 A S T < 5 - 0 0 55 -3,-1.4 -3,-0.2 1,-0.1 -2,-0.1 0.963 37.6-130.3 51.8 72.7 26.0 18.4 6.4 38 38 A Y B + 0 0 46 -2,-0.6 3,-1.2 1,-0.2 -1,-0.0 -0.311 47.9 142.8 -81.1 58.9 8.6 18.8 0.1 45 45 A Y T 3 + 0 0 148 -2,-2.1 -1,-0.2 1,-0.3 0, 0.0 0.712 68.5 60.4 -71.6 -17.8 8.5 18.7 -3.6 46 46 A E T 3 S- 0 0 58 -3,-0.4 -1,-0.3 2,-0.0 -2,-0.1 0.556 107.9-126.8 -82.5 -8.1 7.0 15.3 -3.6 47 47 A G < - 0 0 54 -3,-1.2 -2,-0.1 1,-0.2 2,-0.1 0.843 34.3-176.4 68.0 38.4 4.0 16.6 -1.7 48 48 A F - 0 0 28 1,-0.1 2,-1.8 53,-0.0 -1,-0.2 -0.434 34.4-115.5 -67.4 139.8 3.8 14.4 1.4 49 49 A D + 0 0 147 -2,-0.1 2,-0.5 2,-0.0 -1,-0.1 -0.563 46.0 170.1 -77.3 79.5 0.8 15.1 3.6 50 50 A F - 0 0 21 -2,-1.8 38,-0.1 1,-0.1 37,-0.1 -0.767 28.1-151.4 -93.1 141.8 2.6 16.2 6.7 51 51 A S S S+ 0 0 122 -2,-0.5 2,-0.3 36,-0.3 -1,-0.1 0.478 76.0 74.9 -88.0 1.0 0.2 17.8 9.2 52 52 A V S S- 0 0 23 35,-0.1 2,-0.1 33,-0.0 -2,-0.1 -0.855 85.9-111.2-111.6 149.5 2.9 20.1 10.7 53 53 A S - 0 0 80 -2,-0.3 29,-0.2 1,-0.1 32,-0.1 -0.347 40.8 -69.5 -86.6 163.5 4.1 23.2 8.9 54 54 A S S S+ 0 0 75 27,-0.1 2,-0.2 -2,-0.1 -1,-0.1 -0.134 80.8 82.0 -70.6 162.4 7.4 24.1 7.3 55 55 A P - 0 0 37 0, 0.0 27,-1.2 0, 0.0 2,-0.3 0.668 66.8-166.2 -73.0 162.8 10.1 24.8 7.2 56 56 A Y E -CD 42 81C 20 -14,-0.7 -14,-2.3 -2,-0.2 2,-0.4 -0.806 12.2-162.5-119.0 155.0 11.4 21.3 7.5 57 57 A Y E -CD 41 80C 27 23,-2.7 23,-2.2 -2,-0.3 2,-0.4 -0.983 8.9-146.1-133.3 143.0 14.7 19.7 8.2 58 58 A E E +CD 40 79C 15 -18,-2.7 -18,-1.4 -2,-0.4 21,-0.2 -0.855 16.8 173.9-115.9 142.9 16.0 16.1 7.6 59 59 A W E - D 0 78C 1 19,-2.2 19,-2.7 -2,-0.4 2,-0.1 -0.992 37.2-101.6-141.8 139.8 18.5 14.1 9.7 60 60 A P E - D 0 77C 1 0, 0.0 8,-0.5 0, 0.0 2,-0.5 -0.356 24.4-159.1 -70.1 144.8 19.5 10.5 9.2 61 61 A I B -G 67 0D 7 15,-1.6 15,-0.5 12,-0.2 2,-0.4 -0.978 18.9-142.1-118.0 132.0 18.0 7.8 11.3 62 62 A L > - 0 0 36 4,-0.6 3,-1.5 -2,-0.5 12,-0.1 -0.838 13.9-136.1-101.7 139.3 20.2 4.6 11.4 63 63 A S T 3 S+ 0 0 81 -2,-0.4 -53,-0.1 1,-0.3 -1,-0.1 0.813 104.9 64.8 -57.1 -32.9 18.9 1.0 11.3 64 64 A S T 3 S- 0 0 79 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.785 108.9-123.7 -61.1 -30.3 21.6 0.2 14.0 65 65 A G < + 0 0 40 -3,-1.5 -2,-0.1 1,-0.4 2,-0.1 0.423 69.9 132.0 97.8 -0.5 19.7 2.5 16.5 66 66 A D - 0 0 112 1,-0.1 -4,-0.6 -5,-0.0 -1,-0.4 -0.523 67.2-107.5 -77.7 156.4 22.9 4.5 16.9 67 67 A V B -G 61 0D 58 -2,-0.1 2,-0.1 -6,-0.1 -6,-0.1 -0.656 43.6-100.3 -81.1 142.2 22.6 8.3 16.7 68 68 A Y + 0 0 7 -8,-0.5 -1,-0.1 -2,-0.4 3,-0.1 -0.329 49.7 164.1 -64.5 132.0 24.2 9.5 13.4 69 69 A S - 0 0 107 1,-0.6 -35,-0.3 -2,-0.1 2,-0.3 0.431 60.1 -60.5-129.4 5.4 27.6 10.9 14.0 70 70 A G S S+ 0 0 30 -37,-0.2 -1,-0.6 2,-0.1 2,-0.1 -0.756 94.2 76.1 133.4 175.1 29.3 11.2 10.5 71 71 A G S S- 0 0 59 -2,-0.3 -36,-0.3 -3,-0.1 -1,-0.0 -0.470 98.3 -1.3 84.9-165.4 30.1 8.4 8.0 72 72 A S - 0 0 100 1,-0.2 -2,-0.1 -2,-0.1 3,-0.1 -0.410 57.4-159.1 -64.1 122.5 27.5 6.8 5.8 73 73 A P - 0 0 19 0, 0.0 3,-0.3 0, 0.0 -12,-0.2 0.567 27.9-145.8 -82.8 -7.1 24.0 8.3 6.5 74 74 A G - 0 0 43 1,-0.2 -12,-0.1 -14,-0.1 -3,-0.0 -0.258 35.0 -70.6 72.3-168.9 22.2 5.3 5.0 75 75 A A S S+ 0 0 23 -3,-0.1 17,-2.2 -69,-0.1 18,-0.3 0.607 98.2 87.7-101.9 -12.8 18.9 6.0 3.3 76 76 A D E - E 0 91C 2 -15,-0.5 -15,-1.6 -3,-0.3 2,-0.3 -0.738 48.9-173.0-100.6 153.1 16.4 6.9 5.9 77 77 A R E -DE 60 90C 7 13,-3.4 13,-2.7 -2,-0.3 2,-0.4 -0.983 22.8-141.8-141.8 150.9 15.6 10.2 7.4 78 78 A V E -DE 59 89C 0 -19,-2.7 -19,-2.2 -2,-0.3 2,-0.4 -0.806 23.5-153.9 -98.1 141.3 13.5 11.8 10.2 79 79 A V E +DE 58 88C 0 9,-2.4 8,-2.6 -2,-0.4 9,-1.4 -0.989 21.1 167.8-118.5 127.8 11.9 15.2 9.0 80 80 A F E -DE 57 86C 0 -23,-2.2 -23,-2.7 -2,-0.4 6,-0.2 -0.861 22.9-129.5-134.6 165.7 11.1 17.7 11.8 81 81 A N E > -D 56 0C 2 4,-1.9 3,-2.8 -2,-0.3 -25,-0.2 -0.550 38.3 -82.5-111.6-177.3 10.1 21.4 11.7 82 82 A E T 3 S+ 0 0 65 -27,-1.2 -26,-0.1 1,-0.3 -28,-0.1 0.823 128.3 53.4 -55.8 -28.4 11.3 24.6 13.3 83 83 A N T 3 S- 0 0 114 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.238 119.0-109.7 -91.7 16.1 9.2 23.9 16.4 84 84 A N < + 0 0 64 -3,-2.8 2,-0.4 1,-0.2 -2,-0.2 0.885 69.6 148.5 56.7 38.2 10.8 20.5 16.8 85 85 A Q - 0 0 82 -4,-0.2 -4,-1.9 -32,-0.1 2,-0.4 -0.890 52.0-117.4-103.3 134.2 7.5 18.8 15.7 86 86 A L E +E 80 0C 58 -2,-0.4 -6,-0.3 -6,-0.2 3,-0.1 -0.658 31.9 178.6 -77.3 129.1 7.9 15.4 13.9 87 87 A A E - 0 0 16 -8,-2.6 -36,-0.3 -2,-0.4 2,-0.3 0.805 54.4 -57.3 -99.7 -39.0 6.6 15.7 10.3 88 88 A G E -E 79 0C 10 -9,-1.4 -9,-2.4 -38,-0.1 2,-0.5 -0.955 39.2-100.7 176.5-178.7 7.5 12.1 9.1 89 89 A V E +E 78 0C 4 -2,-0.3 14,-2.8 14,-0.2 2,-0.3 -0.996 44.3 171.5-129.2 124.5 10.0 9.4 8.4 90 90 A I E -EF 77 102C 0 -13,-2.7 -13,-3.4 -2,-0.5 2,-0.3 -0.844 13.1-160.0-130.4 169.6 11.1 9.0 4.8 91 91 A T E -EF 76 101C 2 10,-2.6 10,-2.2 -2,-0.3 -15,-0.2 -0.991 30.0-138.9-151.6 154.5 13.7 7.1 2.8 92 92 A H S > S+ 0 0 32 -17,-2.2 3,-2.0 -2,-0.3 7,-0.1 0.620 72.3 116.9 -84.8 -14.1 15.6 7.1 -0.5 93 93 A T T 3 S+ 0 0 63 -18,-0.3 -86,-0.2 1,-0.3 -2,-0.1 -0.399 86.2 7.1 -55.2 125.5 15.1 3.2 -0.6 94 94 A G T 3 S+ 0 0 82 1,-0.3 2,-0.3 6,-0.0 -1,-0.3 0.578 110.1 106.4 77.2 11.6 12.9 2.2 -3.6 95 95 A A S < S- 0 0 26 -3,-2.0 -1,-0.3 4,-0.2 2,-0.2 -0.936 72.3-112.7-124.8 141.9 13.0 5.8 -5.0 96 96 A S S > S- 0 0 95 -2,-0.3 3,-2.5 4,-0.1 2,-0.1 -0.535 74.0 -23.0 -81.9 154.3 15.0 6.9 -8.0 97 97 A G T 3 S- 0 0 62 1,-0.3 -2,-0.1 -2,-0.2 0, 0.0 -0.262 127.6 -31.2 53.1-117.7 17.9 9.3 -7.8 98 98 A N T 3 S+ 0 0 113 -2,-0.1 -1,-0.3 2,-0.1 -2,-0.1 -0.022 103.8 124.6-120.8 34.8 17.5 11.3 -4.7 99 99 A N < - 0 0 63 -3,-2.5 2,-0.3 -7,-0.1 -4,-0.2 -0.260 51.1-137.6 -78.6 171.8 13.7 11.3 -4.7 100 100 A F - 0 0 12 -6,-0.1 2,-0.3 -2,-0.1 -8,-0.2 -0.935 15.3-159.5-133.4 163.1 12.0 9.9 -1.5 101 101 A V E -F 91 0C 59 -10,-2.2 -10,-2.6 -2,-0.3 2,-0.2 -0.926 33.8-105.8-133.5 155.8 9.2 7.7 -0.5 102 102 A E E -F 90 0C 87 -2,-0.3 -12,-0.3 -12,-0.2 2,-0.2 -0.577 30.7-117.2 -83.2 153.1 7.5 7.8 2.9 103 103 A b 0 0 15 -14,-2.8 -14,-0.2 -2,-0.2 -97,-0.2 -0.566 360.0 360.0 -83.7 150.2 8.2 5.0 5.4 104 104 A T 0 0 136 -99,-2.1 -98,-0.1 -2,-0.2 -1,-0.1 0.600 360.0 360.0-105.9 360.0 5.0 3.0 6.2