==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 16-MAY-08 2RPI . COMPND 2 MOLECULE: RIBONUCLEASE H; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; . AUTHOR Z.ZHOU,H.FENG,Y.BAI . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6816.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 61.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 7.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 30.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 233 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 137.9 -22.1 -3.5 -18.5 2 2 A N - 0 0 120 5,-0.0 5,-0.1 3,-0.0 0, 0.0 0.002 360.0 -25.3 79.9 170.3 -18.6 -2.5 -17.1 3 3 A P - 0 0 47 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.006 59.9-129.7 -46.3 157.0 -16.0 -5.0 -15.9 4 4 A S S S+ 0 0 124 1,-0.1 -2,-0.0 3,-0.0 0, 0.0 0.818 95.1 63.3 -85.1 -33.0 -17.4 -8.4 -14.8 5 5 A P S S- 0 0 60 0, 0.0 -1,-0.1 0, 0.0 41,-0.0 0.977 124.8 -71.9 -52.4 -77.0 -15.7 -8.7 -11.4 6 6 A R S S- 0 0 109 38,-0.0 2,-0.1 41,-0.0 40,-0.1 0.280 93.6 -35.7-148.0 -62.5 -17.1 -5.7 -9.5 7 7 A K - 0 0 91 -5,-0.1 40,-0.5 37,-0.0 2,-0.5 -0.554 51.9-143.2-177.5 104.4 -15.7 -2.5 -10.9 8 8 A R - 0 0 86 38,-0.2 2,-0.5 -2,-0.1 40,-0.3 -0.624 19.5-160.7 -77.7 124.0 -12.2 -2.0 -12.2 9 9 A V B -a 48 0A 40 38,-1.1 40,-2.8 -2,-0.5 2,-1.3 -0.901 14.8-144.4-109.2 133.3 -10.9 1.5 -11.3 10 10 A A + 0 0 50 -2,-0.5 2,-0.6 38,-0.2 40,-0.1 -0.695 30.1 173.8 -93.5 83.6 -7.9 3.1 -13.1 11 11 A L - 0 0 42 -2,-1.3 40,-2.6 38,-0.1 2,-0.8 -0.837 17.3-158.2 -98.1 117.0 -6.3 5.0 -10.2 12 12 A F B -b 51 0B 122 -2,-0.6 2,-2.2 38,-0.2 40,-0.2 -0.822 16.4-137.8 -96.5 108.5 -2.9 6.6 -11.0 13 13 A T + 0 0 5 38,-1.9 40,-0.4 -2,-0.8 18,-0.1 -0.415 46.0 152.1 -65.0 84.1 -0.9 7.3 -7.9 14 14 A D + 0 0 125 -2,-2.2 -1,-0.2 1,-0.2 -2,-0.1 -0.405 8.6 163.5-115.0 53.5 0.2 10.7 -9.0 15 15 A G - 0 0 29 12,-0.2 -1,-0.2 -2,-0.1 12,-0.1 0.863 49.7-109.0 -33.0 -90.9 0.7 12.4 -5.6 16 16 A A - 0 0 57 11,-0.1 -1,-0.1 7,-0.0 11,-0.1 0.037 25.8-134.1-175.5 -55.7 2.7 15.5 -6.6 17 17 A A + 0 0 31 9,-0.1 7,-0.0 5,-0.1 -3,-0.0 0.943 69.4 100.5 77.4 86.9 6.3 15.2 -5.4 18 18 A L + 0 0 129 4,-0.1 0, 0.0 0, 0.0 0, 0.0 0.229 41.3 159.4-178.4 11.6 7.4 18.5 -3.8 19 19 A G - 0 0 18 1,-0.1 5,-0.1 2,-0.1 7,-0.1 -0.057 61.1-100.2 -48.4 153.4 7.1 17.9 -0.1 20 20 A N S S+ 0 0 178 1,-0.2 -1,-0.1 2,-0.1 0, 0.0 0.902 130.8 42.0 -42.5 -47.6 9.1 20.3 2.1 21 21 A P S S- 0 0 107 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.959 120.1-120.8 -62.3 -52.4 11.7 17.4 2.4 22 22 A G >> - 0 0 14 1,-0.1 4,-1.3 2,-0.0 3,-0.8 -0.549 36.9 -56.5 128.4 169.2 11.4 16.6 -1.3 23 23 A P T 34 S+ 0 0 71 0, 0.0 5,-0.4 0, 0.0 4,-0.2 0.618 97.1 115.4 -51.8 -13.0 10.3 13.6 -3.5 24 24 A G T 34 S- 0 0 75 1,-0.2 -2,-0.0 -5,-0.1 0, 0.0 0.524 112.5 -39.4 -39.7 -7.4 13.1 11.9 -1.6 25 25 A T T <> S+ 0 0 75 -3,-0.8 4,-1.6 -6,-0.0 -1,-0.2 0.197 126.6 90.5 160.3 -6.0 10.3 9.7 -0.2 26 26 A T H X S+ 0 0 19 -4,-1.3 4,-4.0 2,-0.2 5,-0.2 0.863 85.0 56.0 -77.2 -36.4 7.4 12.1 0.4 27 27 A N H > S+ 0 0 29 2,-0.2 4,-3.5 -5,-0.2 -12,-0.2 0.927 109.9 46.0 -59.9 -44.9 6.0 11.6 -3.1 28 28 A N H > S+ 0 0 24 -5,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.912 115.9 45.7 -63.9 -42.0 5.8 7.9 -2.4 29 29 A R H X S+ 0 0 127 -4,-1.6 4,-3.2 2,-0.2 -2,-0.2 0.888 114.0 49.2 -67.3 -39.4 4.3 8.6 1.0 30 30 A M H X S+ 0 0 78 -4,-4.0 4,-3.2 2,-0.3 -2,-0.2 0.917 112.1 47.3 -66.6 -41.2 2.0 11.1 -0.7 31 31 A E H X S+ 0 0 4 -4,-3.5 4,-1.3 1,-0.2 -2,-0.2 0.874 114.3 48.4 -65.6 -34.4 1.0 8.6 -3.3 32 32 A L H X S+ 0 0 1 -4,-2.2 4,-2.3 -5,-0.2 -2,-0.3 0.892 111.1 50.0 -70.2 -40.0 0.6 6.2 -0.4 33 33 A K H X S+ 0 0 103 -4,-3.2 4,-1.8 1,-0.2 -2,-0.2 0.914 110.2 49.5 -64.0 -44.2 -1.5 8.8 1.4 34 34 A A H X S+ 0 0 42 -4,-3.2 4,-2.2 2,-0.2 -1,-0.2 0.808 109.6 55.5 -64.7 -28.7 -3.6 9.3 -1.7 35 35 A A H X S+ 0 0 2 -4,-1.3 4,-1.0 2,-0.2 5,-0.3 0.977 103.8 48.8 -68.8 -57.5 -4.0 5.6 -1.9 36 36 A I H >X S+ 0 0 23 -4,-2.3 4,-1.3 1,-0.3 3,-0.5 0.886 118.8 43.5 -51.1 -37.0 -5.4 5.0 1.6 37 37 A E H 3X S+ 0 0 62 -4,-1.8 4,-2.6 1,-0.2 -1,-0.3 0.866 109.1 56.3 -73.9 -38.0 -7.8 7.8 0.7 38 38 A G H 3< S+ 0 0 14 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.506 118.8 33.9 -72.3 -3.6 -8.4 6.4 -2.7 39 39 A L H - 0 0 1 -2,-0.2 4,-0.8 -26,-0.1 5,-0.2 -0.673 61.9-141.3-101.4 156.1 7.2 4.4 -6.7 55 55 A H T 4 S+ 0 0 146 -2,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.345 101.3 45.9 -95.2 4.5 10.2 2.6 -5.4 56 56 A Y T > S+ 0 0 35 3,-0.1 4,-2.0 2,-0.1 5,-0.1 0.756 112.3 43.8-110.4 -48.2 8.7 2.1 -2.0 57 57 A L H > S+ 0 0 5 2,-0.2 4,-1.9 1,-0.2 5,-0.3 0.955 118.5 44.8 -63.8 -50.3 5.2 0.9 -2.7 58 58 A K H X S+ 0 0 72 -4,-0.8 4,-4.0 1,-0.2 5,-0.4 0.968 110.3 54.0 -57.4 -57.5 6.3 -1.5 -5.4 59 59 A K H > S+ 0 0 88 -5,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.893 107.9 51.9 -42.9 -53.0 9.2 -2.9 -3.4 60 60 A A H < S+ 0 0 0 -4,-2.0 5,-0.5 2,-0.2 3,-0.4 0.969 119.7 31.1 -51.4 -66.0 6.8 -3.7 -0.6 61 61 A F H >< S+ 0 0 37 -4,-1.9 3,-1.6 1,-0.2 -2,-0.2 0.890 118.2 55.9 -62.2 -43.0 4.3 -5.7 -2.5 62 62 A T H 3< S+ 0 0 68 -4,-4.0 -1,-0.2 -5,-0.3 -2,-0.2 0.772 102.3 57.5 -63.7 -24.0 6.8 -7.0 -5.1 63 63 A E T 3< S- 0 0 73 -4,-2.0 -1,-0.3 -3,-0.4 -2,-0.2 0.613 90.9-155.7 -80.3 -10.5 8.8 -8.4 -2.2 64 64 A G X + 0 0 55 -3,-1.6 3,-0.9 -4,-0.4 4,-0.3 0.506 65.1 112.6 49.8 1.9 5.7 -10.4 -1.3 65 65 A W T 3> + 0 0 67 -5,-0.5 4,-3.0 1,-0.2 -1,-0.2 0.315 38.5 104.5 -83.9 10.9 7.2 -10.4 2.2 66 66 A L H 3> S+ 0 0 22 -6,-0.4 4,-1.7 1,-0.3 -1,-0.2 0.874 78.8 54.1 -59.2 -32.6 4.3 -8.2 3.3 67 67 A E H <> S+ 0 0 121 -3,-0.9 4,-1.6 1,-0.2 3,-0.3 0.962 107.2 49.5 -63.9 -47.0 2.9 -11.3 4.9 68 68 A G H > S+ 0 0 18 -4,-0.3 4,-1.8 1,-0.2 6,-0.3 0.921 100.3 66.2 -56.7 -43.2 6.2 -11.7 6.7 69 69 A W H ><>S+ 0 0 7 -4,-3.0 5,-1.6 1,-0.3 3,-1.1 0.923 101.5 48.0 -43.5 -53.9 5.9 -8.1 7.7 70 70 A R H ><5S+ 0 0 134 -4,-1.7 3,-1.0 1,-0.3 -1,-0.3 0.903 116.5 42.1 -55.1 -43.1 2.8 -9.1 9.8 71 71 A K H 3<5S+ 0 0 161 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.561 107.9 64.7 -79.8 -8.0 4.8 -12.0 11.3 72 72 A R T <<5S- 0 0 112 -4,-1.8 -1,-0.2 -3,-1.1 -2,-0.2 0.253 108.9-121.0 -96.7 9.7 7.8 -9.6 11.6 73 73 A G T < 5 - 0 0 37 -3,-1.0 -3,-0.2 -5,-0.2 -2,-0.1 0.571 68.6 -69.9 60.8 4.8 6.0 -7.4 14.1 74 74 A W S - 0 0 5 -8,-0.8 3,-0.8 -7,-0.1 2,-0.2 -0.696 30.7-126.8 -88.9 138.5 8.8 0.5 9.5 83 83 A K T 3 S+ 0 0 123 -2,-0.3 5,-0.1 1,-0.2 -1,-0.0 -0.615 93.1 18.1 -85.3 146.1 8.2 4.0 8.4 84 84 A N T >> S+ 0 0 22 -2,-0.2 4,-2.9 1,-0.1 3,-1.4 0.536 77.7 147.2 72.8 6.1 4.6 5.0 7.4 85 85 A R H <> S+ 0 0 136 -3,-0.8 4,-2.4 1,-0.3 5,-0.2 0.741 70.2 55.9 -44.4 -24.6 3.5 1.9 9.4 86 86 A D H 3> S+ 0 0 105 2,-0.2 4,-1.1 3,-0.2 -1,-0.3 0.887 108.9 42.7 -77.6 -40.6 0.5 4.0 10.2 87 87 A L H <> S+ 0 0 29 -3,-1.4 4,-3.3 2,-0.2 -2,-0.2 0.921 120.1 45.1 -70.2 -43.1 -0.4 4.7 6.6 88 88 A W H X S+ 0 0 2 -4,-2.9 4,-4.3 2,-0.2 5,-0.3 0.977 111.1 48.8 -63.7 -61.3 0.3 1.1 5.7 89 89 A E H X S+ 0 0 89 -4,-2.4 4,-1.3 1,-0.2 -1,-0.2 0.818 119.3 43.9 -50.8 -28.9 -1.5 -0.5 8.7 90 90 A A H X S+ 0 0 34 -4,-1.1 4,-2.3 2,-0.2 -2,-0.2 0.893 113.9 47.0 -83.0 -42.4 -4.4 1.8 7.7 91 91 A L H X S+ 0 0 6 -4,-3.3 4,-1.1 2,-0.2 -2,-0.2 0.873 112.5 52.4 -65.6 -36.1 -4.1 1.2 4.0 92 92 A L H < S+ 0 0 58 -4,-4.3 4,-0.3 2,-0.2 -1,-0.2 0.907 111.5 44.8 -66.5 -41.8 -3.9 -2.6 4.7 93 93 A L H >< S+ 0 0 136 -4,-1.3 3,-0.6 -5,-0.3 -2,-0.2 0.857 117.1 46.4 -69.1 -34.4 -7.0 -2.4 6.8 94 94 A A H 3< S+ 0 0 19 -4,-2.3 4,-0.4 1,-0.2 -2,-0.2 0.623 107.4 58.6 -81.4 -14.9 -8.6 -0.3 4.1 95 95 A M T 3< S+ 0 0 22 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.395 85.7 81.3 -94.0 1.3 -7.3 -2.7 1.4 96 96 A A S < S+ 0 0 71 -3,-0.6 -1,-0.2 -4,-0.3 -2,-0.2 0.952 92.5 43.9 -71.6 -50.8 -9.2 -5.7 2.9 97 97 A P S S+ 0 0 59 0, 0.0 -1,-0.2 0, 0.0 2,-0.2 0.834 111.6 64.0 -62.8 -35.4 -12.6 -4.9 1.4 98 98 A H S S- 0 0 9 -4,-0.4 -51,-0.1 -53,-0.2 -59,-0.0 -0.502 71.5-143.0 -91.3 163.1 -11.1 -4.1 -2.0 99 99 A R - 0 0 127 -53,-1.2 -52,-0.2 -2,-0.2 -1,-0.1 0.405 37.7-178.9 -99.8 -1.6 -9.2 -6.3 -4.4 100 100 A V - 0 0 11 -54,-0.7 2,-0.2 1,-0.1 -51,-0.2 0.497 15.6-144.1 -2.3 111.9 -7.0 -3.4 -5.3 101 101 A R E -c 49 0B 92 -53,-1.9 -51,-1.5 2,-0.0 2,-0.5 -0.622 5.6-128.3 -92.5 153.8 -4.5 -4.5 -7.9 102 102 A F E +c 50 0B 76 -2,-0.2 2,-0.3 -53,-0.2 -51,-0.2 -0.888 25.7 175.4-106.0 129.1 -0.9 -3.4 -8.1 103 103 A H E -c 51 0B 72 -53,-2.2 2,-1.3 -2,-0.5 -51,-0.7 -0.743 16.5-158.0-133.7 86.3 0.5 -2.0 -11.4 104 104 A F - 0 0 75 -2,-0.3 2,-1.3 -53,-0.2 -51,-0.2 -0.486 11.3-171.8 -67.8 97.7 4.0 -0.7 -11.1 105 105 A V 0 0 87 -2,-1.3 -52,-0.1 0, 0.0 -1,-0.1 -0.641 360.0 360.0 -94.2 77.8 4.1 1.7 -14.1 106 106 A K 0 0 110 -2,-1.3 -52,-0.0 -54,-0.1 -2,-0.0 -0.929 360.0 360.0-110.3 360.0 7.8 2.6 -14.1