==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-AUG-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-APR-13 2RT6 . COMPND 2 MOLECULE: PRIMOSOMAL REPLICATION PROTEIN N''; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR T.ARAMAKI,Y.ABE,T.KATAYAMA,T.UEDA . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7943.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 75.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 199 0, 0.0 2,-3.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 171.4 -7.7 -0.2 -22.4 2 2 A K >> + 0 0 151 1,-0.2 4,-1.7 2,-0.0 3,-0.9 -0.333 360.0 64.2 69.4 -65.9 -5.9 -2.5 -20.0 3 3 A T H 3> S+ 0 0 105 -2,-3.2 4,-0.6 1,-0.3 -1,-0.2 0.781 101.0 53.2 -57.7 -27.0 -3.7 0.3 -18.7 4 4 A A H 3> S+ 0 0 54 2,-0.2 4,-1.5 1,-0.1 -1,-0.3 0.761 103.5 57.0 -79.5 -26.7 -6.9 1.9 -17.4 5 5 A L H <> S+ 0 0 97 -3,-0.9 4,-2.4 2,-0.2 3,-0.2 0.947 101.6 52.9 -69.3 -50.5 -7.9 -1.3 -15.5 6 6 A L H X S+ 0 0 90 -4,-1.7 4,-2.2 1,-0.2 -1,-0.2 0.804 108.5 54.2 -55.6 -30.0 -4.7 -1.6 -13.4 7 7 A L H X S+ 0 0 120 -4,-0.6 4,-2.3 -5,-0.2 5,-0.3 0.910 108.7 45.8 -71.5 -43.8 -5.4 2.0 -12.3 8 8 A E H X S+ 0 0 146 -4,-1.5 4,-2.3 -3,-0.2 -2,-0.2 0.849 115.0 48.7 -67.7 -34.9 -8.9 1.3 -11.1 9 9 A K H X S+ 0 0 141 -4,-2.4 4,-3.1 3,-0.2 5,-0.4 0.925 112.0 47.3 -70.8 -46.2 -7.7 -1.8 -9.3 10 10 A L H X S+ 0 0 75 -4,-2.2 4,-1.8 -5,-0.2 -2,-0.2 0.945 122.2 35.0 -60.5 -50.8 -4.8 -0.1 -7.6 11 11 A E H X S+ 0 0 123 -4,-2.3 4,-1.8 2,-0.2 -2,-0.2 0.875 119.5 51.5 -72.1 -38.7 -6.9 2.9 -6.4 12 12 A G H X S+ 0 0 32 -4,-2.3 4,-2.4 -5,-0.3 -2,-0.2 0.936 113.8 41.9 -64.1 -48.0 -10.0 0.7 -5.9 13 13 A Q H X S+ 0 0 95 -4,-3.1 4,-3.3 1,-0.2 5,-0.4 0.896 112.0 55.4 -66.4 -41.3 -8.2 -1.9 -3.7 14 14 A L H X S+ 0 0 38 -4,-1.8 4,-1.6 -5,-0.4 -1,-0.2 0.864 112.1 44.1 -59.7 -37.1 -6.2 0.8 -1.8 15 15 A A H X S+ 0 0 47 -4,-1.8 4,-1.5 2,-0.2 -2,-0.2 0.924 116.5 44.6 -74.0 -46.7 -9.5 2.5 -0.9 16 16 A T H X S+ 0 0 66 -4,-2.4 4,-2.7 2,-0.2 5,-0.3 0.948 116.7 45.3 -62.7 -50.9 -11.4 -0.7 0.0 17 17 A L H X S+ 0 0 31 -4,-3.3 4,-3.1 1,-0.2 -1,-0.2 0.913 112.2 51.7 -59.6 -45.0 -8.5 -2.1 2.0 18 18 A R H < S+ 0 0 138 -4,-1.6 -1,-0.2 -5,-0.4 -2,-0.2 0.810 112.2 48.4 -62.5 -30.0 -7.9 1.2 3.8 19 19 A Q H >< S+ 0 0 134 -4,-1.5 3,-0.8 -3,-0.2 -2,-0.2 0.933 116.6 39.1 -75.8 -48.9 -11.6 1.3 4.7 20 20 A R H 3< S+ 0 0 156 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.840 125.1 40.2 -70.0 -34.0 -11.8 -2.2 6.1 21 21 A C T 3< S+ 0 0 21 -4,-3.1 3,-0.5 -5,-0.3 -1,-0.2 0.205 88.8 101.9 -98.7 13.8 -8.3 -1.9 7.7 22 22 A A S X S+ 0 0 49 -3,-0.8 2,-2.5 1,-0.3 3,-0.8 0.984 75.8 52.6 -60.3 -61.4 -9.0 1.7 8.8 23 23 A P T 3 S+ 0 0 88 0, 0.0 -1,-0.3 0, 0.0 4,-0.1 -0.325 81.7 100.2 -75.5 60.1 -9.8 0.9 12.5 24 24 A V T >> + 0 0 20 -2,-2.5 3,-0.6 -3,-0.5 4,-0.6 0.482 49.0 89.1-119.3 -11.5 -6.5 -1.0 13.0 25 25 A S T <4 S+ 0 0 80 -3,-0.8 3,-0.1 1,-0.2 -1,-0.1 0.732 84.1 62.2 -59.9 -21.8 -4.4 1.6 14.7 26 26 A Q T 34 S+ 0 0 159 1,-0.2 -1,-0.2 21,-0.0 -2,-0.1 0.899 124.8 13.3 -71.4 -42.0 -5.8 0.3 18.0 27 27 A F T <4 S+ 0 0 139 -3,-0.6 -2,-0.2 -4,-0.1 -1,-0.2 0.001 88.1 155.3-123.0 26.3 -4.3 -3.2 17.5 28 28 A A < + 0 0 18 -4,-0.6 2,-0.3 17,-0.1 -3,-0.1 -0.378 12.5 162.2 -59.9 122.6 -1.9 -2.4 14.7 29 29 A T - 0 0 84 -2,-0.2 2,-0.4 16,-0.1 16,-0.2 -0.955 25.9-151.6-149.4 126.0 0.9 -5.0 14.8 30 30 A L - 0 0 25 14,-0.8 4,-0.1 -2,-0.3 -2,-0.0 -0.815 24.5-118.6-100.7 136.2 3.4 -6.0 12.1 31 31 A S > - 0 0 44 -2,-0.4 3,-0.6 1,-0.1 -1,-0.1 0.044 26.8-108.2 -59.9 176.0 4.9 -9.5 12.0 32 32 A A T 3 S+ 0 0 93 1,-0.2 -1,-0.1 2,-0.0 -2,-0.0 0.401 109.0 77.1 -89.1 1.8 8.7 -10.1 12.3 33 33 A R T 3 + 0 0 225 2,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.103 66.1 142.8 -97.3 21.3 8.9 -11.0 8.6 34 34 A F < - 0 0 92 -3,-0.6 2,-0.4 -4,-0.1 3,-0.0 -0.302 39.5-147.2 -63.0 145.0 8.8 -7.3 7.6 35 35 A D > - 0 0 82 1,-0.1 4,-3.1 5,-0.0 -2,-0.1 -0.967 14.2-149.7-121.0 130.1 10.9 -6.3 4.7 36 36 A R T 4 S+ 0 0 115 -2,-0.4 -1,-0.1 1,-0.2 5,-0.1 0.734 101.0 56.0 -65.8 -22.3 12.6 -2.8 4.3 37 37 A H T 4 S+ 0 0 130 1,-0.1 -1,-0.2 3,-0.1 44,-0.1 0.906 117.7 30.3 -76.4 -44.4 12.3 -3.3 0.5 38 38 A L T 4 S+ 0 0 66 43,-0.1 2,-0.3 2,-0.1 -2,-0.2 0.792 126.8 45.5 -84.3 -31.1 8.5 -3.9 0.5 39 39 A F S < S- 0 0 12 -4,-3.1 10,-0.0 1,-0.1 -1,-0.0 -0.840 86.0-115.2-115.1 152.2 7.8 -1.7 3.5 40 40 A Q - 0 0 54 -2,-0.3 3,-0.4 1,-0.1 -3,-0.1 -0.224 32.3-104.4 -77.1 170.9 9.1 1.7 4.4 41 41 A T S S+ 0 0 124 1,-0.2 -1,-0.1 -5,-0.1 -5,-0.0 0.862 124.0 50.6 -64.0 -36.4 11.4 2.5 7.4 42 42 A R S S+ 0 0 192 6,-0.1 2,-1.7 1,-0.1 3,-0.3 0.713 80.7 109.5 -74.1 -20.9 8.4 4.0 9.3 43 43 A A + 0 0 3 -3,-0.4 3,-0.1 1,-0.2 -1,-0.1 -0.362 31.8 131.7 -59.8 87.1 6.4 0.9 8.5 44 44 A T + 0 0 97 -2,-1.7 -14,-0.8 1,-0.2 2,-0.3 0.656 68.1 16.6-110.7 -27.9 6.3 -0.5 12.1 45 45 A T S > S- 0 0 30 -3,-0.3 4,-1.9 -16,-0.2 -1,-0.2 -0.842 85.2 -94.6-138.8 175.0 2.6 -1.3 12.5 46 46 A L H > S+ 0 0 21 -2,-0.3 4,-2.2 1,-0.2 3,-0.4 0.956 124.7 46.4 -56.6 -55.0 -0.5 -1.8 10.4 47 47 A Q H > S+ 0 0 84 -23,-0.3 4,-2.3 1,-0.3 -1,-0.2 0.852 111.3 54.1 -57.1 -35.8 -1.7 1.8 10.7 48 48 A A H > S+ 0 0 7 2,-0.2 4,-2.4 1,-0.2 -1,-0.3 0.849 107.1 51.1 -67.7 -34.8 1.9 2.9 9.9 49 49 A C H X S+ 0 0 4 -4,-1.9 4,-2.2 -3,-0.4 -2,-0.2 0.940 112.8 43.5 -67.9 -48.6 1.8 0.9 6.7 50 50 A L H X S+ 0 0 19 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.891 115.3 50.3 -64.0 -40.4 -1.5 2.3 5.5 51 51 A D H X S+ 0 0 104 -4,-2.3 4,-1.9 -5,-0.2 -2,-0.2 0.941 110.9 47.7 -63.3 -49.0 -0.4 5.8 6.5 52 52 A E H X S+ 0 0 20 -4,-2.4 4,-1.7 1,-0.2 -2,-0.2 0.896 111.6 51.4 -59.3 -41.7 2.9 5.6 4.7 53 53 A A H X S+ 0 0 6 -4,-2.2 4,-2.5 1,-0.2 5,-0.3 0.883 107.1 53.5 -63.6 -39.1 1.2 4.2 1.6 54 54 A G H X S+ 0 0 17 -4,-2.0 4,-1.8 1,-0.2 -1,-0.2 0.876 109.1 47.9 -63.9 -38.2 -1.3 7.1 1.6 55 55 A D H X S+ 0 0 107 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.823 111.8 51.4 -71.6 -31.9 1.5 9.6 1.7 56 56 A N H X S+ 0 0 29 -4,-1.7 4,-2.4 2,-0.2 -2,-0.2 0.964 112.1 43.1 -69.2 -54.1 3.3 7.8 -1.2 57 57 A L H X S+ 0 0 39 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.871 113.1 55.6 -59.9 -38.0 0.4 7.7 -3.5 58 58 A A H X S+ 0 0 46 -4,-1.8 4,-1.9 -5,-0.3 3,-0.4 0.963 111.3 41.0 -59.7 -54.8 -0.5 11.3 -2.7 59 59 A A H X S+ 0 0 52 -4,-2.0 4,-2.5 1,-0.2 -1,-0.2 0.862 112.9 56.2 -62.2 -36.4 2.9 12.6 -3.6 60 60 A L H X S+ 0 0 32 -4,-2.4 4,-0.6 1,-0.2 -1,-0.2 0.825 106.7 50.9 -65.2 -31.7 3.0 10.4 -6.7 61 61 A R H < S+ 0 0 187 -4,-1.8 3,-0.4 -3,-0.4 -2,-0.2 0.911 116.5 38.3 -72.2 -44.3 -0.3 11.9 -7.8 62 62 A H H >X S+ 0 0 119 -4,-1.9 3,-1.8 1,-0.2 4,-0.5 0.775 103.7 71.5 -76.9 -27.8 0.9 15.5 -7.4 63 63 A A H ><>S+ 0 0 6 -4,-2.5 5,-1.5 1,-0.3 3,-1.2 0.786 81.6 74.0 -58.5 -28.2 4.4 14.6 -8.8 64 64 A V G ><5S+ 0 0 75 -4,-0.6 3,-1.0 -3,-0.4 -1,-0.3 0.801 91.2 56.9 -56.1 -29.5 2.8 14.2 -12.2 65 65 A E G <45S+ 0 0 146 -3,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.794 104.6 50.8 -72.6 -29.2 2.6 18.0 -12.4 66 66 A Q G <<5S- 0 0 119 -3,-1.2 -1,-0.2 -4,-0.5 -2,-0.2 0.221 117.1-113.4 -92.5 14.1 6.3 18.2 -11.8 67 67 A Q T < 5 + 0 0 142 -3,-1.0 -3,-0.2 1,-0.2 -2,-0.1 0.925 62.1 154.9 54.5 48.3 7.0 15.7 -14.6 68 68 A Q >>< + 0 0 47 -5,-1.5 4,-1.1 1,-0.2 3,-0.9 -0.145 16.9 133.6 -97.2 37.4 8.4 13.2 -12.1 69 69 A L H >> + 0 0 98 1,-0.3 3,-1.3 2,-0.2 4,-0.8 0.920 67.4 58.1 -52.4 -49.4 7.5 10.3 -14.4 70 70 A P H 3> S+ 0 0 104 0, 0.0 4,-0.6 0, 0.0 3,-0.5 0.820 106.5 50.1 -51.6 -33.0 11.0 8.7 -13.9 71 71 A Q H <> S+ 0 0 98 -3,-0.9 4,-2.5 1,-0.2 5,-0.3 0.745 93.8 73.6 -78.0 -24.8 10.2 8.6 -10.1 72 72 A V H