==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 22-DEC-03 1RYQ . COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE, SUBUNIT E''; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; . AUTHOR Z.-J.LIU,L.CHEN,W.TEMPEL,A.SHAH,W.B.ARENDALL III,J.P.ROSE, . 62 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4208.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 29.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -4 A H 0 0 174 0, 0.0 34,-2.5 0, 0.0 33,-0.5 0.000 360.0 360.0 360.0 -11.0 31.0 8.0 -13.9 2 -3 A H B A 33 0A 97 31,-0.2 31,-0.2 32,-0.2 29,-0.0 -0.824 360.0 360.0-128.4 171.1 31.9 4.6 -12.3 3 -2 A H 0 0 120 29,-2.5 30,-0.1 -2,-0.3 28,-0.0 0.775 360.0 360.0 -56.3 360.0 34.6 3.1 -10.2 4 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 5 3 A E 0 0 106 0, 0.0 2,-0.3 0, 0.0 11,-0.2 0.000 360.0 360.0 360.0 121.2 37.9 7.0 -4.8 6 4 A K E -D 15 0B 75 9,-2.8 9,-2.8 11,-0.1 2,-0.4 -0.896 360.0-130.5-124.2 154.0 35.7 4.6 -2.8 7 5 A A E -DE 14 29B 0 22,-2.5 22,-3.2 -2,-0.3 2,-0.3 -0.858 23.8-113.6-109.7 139.6 32.0 4.8 -1.9 8 6 A C E > - E 0 28B 0 5,-2.8 4,-1.8 -2,-0.4 20,-0.2 -0.504 15.3-145.5 -69.5 129.3 30.5 4.4 1.5 9 7 A R T 4 S+ 0 0 118 18,-3.1 -1,-0.1 -2,-0.3 19,-0.1 0.677 96.2 42.6 -68.3 -15.4 28.3 1.3 1.8 10 8 A H T 4 S+ 0 0 120 17,-0.2 -1,-0.2 3,-0.1 18,-0.1 0.836 133.7 10.2-101.4 -38.1 25.9 3.1 4.2 11 9 A C T 4 S- 0 0 35 2,-0.1 -2,-0.2 14,-0.0 -3,-0.0 0.452 90.5-127.0-124.2 -3.6 25.4 6.6 2.8 12 10 A H < + 0 0 57 -4,-1.8 47,-2.4 1,-0.2 -3,-0.1 0.425 51.7 152.7 72.5 8.1 27.0 6.3 -0.7 13 11 A Y B -B 58 0A 44 45,-0.2 -5,-2.8 -6,-0.1 2,-0.5 -0.374 41.5-130.9 -68.6 143.4 29.3 9.3 -0.4 14 12 A I E +D 7 0B 13 43,-3.1 43,-0.4 -7,-0.2 2,-0.3 -0.867 37.8 159.0-102.9 126.6 32.5 9.0 -2.5 15 13 A T E -D 6 0B 12 -9,-2.8 -9,-2.8 -2,-0.5 5,-0.1 -0.967 46.4-148.2-143.1 155.4 35.8 9.8 -0.7 16 14 A S S S+ 0 0 100 -2,-0.3 4,-0.1 -11,-0.2 -9,-0.1 0.376 76.3 100.5 -99.0 -1.9 39.6 9.2 -1.0 17 15 A E S S- 0 0 122 2,-0.2 -11,-0.1 -11,-0.1 -2,-0.1 -0.235 87.1-112.8 -76.5 168.7 39.8 9.2 2.9 18 16 A D S S+ 0 0 94 1,-0.1 2,-0.3 2,-0.0 10,-0.2 0.465 100.6 31.6 -87.4 0.7 40.0 6.1 5.0 19 17 A R S S- 0 0 107 8,-0.1 7,-0.2 -11,-0.0 -2,-0.2 -0.989 94.6 -95.8-151.3 152.4 36.6 6.8 6.5 20 18 A C > - 0 0 1 5,-3.2 4,-1.6 -2,-0.3 7,-0.1 -0.543 24.5-153.8 -69.3 124.8 33.4 8.4 5.2 21 19 A P T 4 S+ 0 0 68 0, 0.0 -1,-0.2 0, 0.0 -6,-0.0 0.736 90.2 54.6 -69.8 -20.5 33.2 12.1 6.3 22 20 A V T 4 S+ 0 0 49 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 0.979 129.6 5.7 -79.0 -56.7 29.4 12.0 6.2 23 21 A C T 4 S- 0 0 69 2,-0.1 -1,-0.1 -10,-0.0 -3,-0.0 0.510 94.7-120.0-106.5 -10.5 28.4 9.1 8.4 24 22 A G < + 0 0 39 -4,-1.6 2,-0.0 1,-0.2 0, 0.0 0.378 58.8 150.0 88.2 -5.1 31.9 8.2 9.8 25 23 A S - 0 0 21 -6,-0.1 -5,-3.2 1,-0.1 -1,-0.2 -0.291 44.5-153.6 -68.1 149.9 31.9 4.6 8.5 26 24 A R + 0 0 192 -7,-0.2 2,-2.2 1,-0.1 -1,-0.1 0.421 68.2 108.5 -92.1 1.3 35.0 2.7 7.5 27 25 A D + 0 0 76 -7,-0.1 -18,-3.1 2,-0.0 2,-0.5 -0.407 44.3 160.1 -84.6 71.8 33.0 0.6 5.1 28 26 A L E -E 8 0B 24 -2,-2.2 2,-0.4 -20,-0.2 -20,-0.2 -0.809 25.0-151.7 -98.0 127.8 34.3 2.1 1.9 29 27 A S E -E 7 0B 4 -22,-3.2 -22,-2.5 -2,-0.5 -2,-0.0 -0.837 18.9-156.0-104.4 136.1 33.9 0.0 -1.3 30 28 A E S S+ 0 0 149 -2,-0.4 2,-0.7 -24,-0.2 -1,-0.1 0.644 84.4 76.3 -73.5 -15.6 36.1 0.1 -4.4 31 29 A E + 0 0 100 32,-0.4 32,-2.7 -24,-0.1 2,-0.3 -0.850 62.8 128.1-106.3 104.0 33.1 -1.2 -6.4 32 30 A W E - C 0 62A 13 -2,-0.7 -29,-2.5 30,-0.2 2,-0.3 -0.971 33.4-154.0-151.9 160.7 30.5 1.5 -7.1 33 31 A F E +AC 2 61A 43 28,-2.8 28,-2.3 -2,-0.3 27,-0.8 -0.974 55.9 31.5-142.3 152.2 28.6 3.0 -10.1 34 32 A D E - 0 0 59 -33,-0.5 26,-1.8 -2,-0.3 -32,-0.2 0.997 64.2-148.1 69.8 73.4 26.8 6.1 -11.3 35 33 A L E - C 0 59A 54 -34,-2.5 2,-0.3 24,-0.2 24,-0.2 -0.431 17.1-176.9 -66.5 135.8 28.5 9.2 -9.9 36 34 A V E - C 0 58A 26 22,-2.5 22,-2.3 -2,-0.1 2,-0.4 -0.960 14.6-141.2-130.0 152.2 26.4 12.2 -9.2 37 35 A I E - C 0 57A 94 -2,-0.3 2,-0.5 20,-0.2 20,-0.2 -0.952 11.3-170.5-118.1 133.5 27.5 15.6 -7.9 38 36 A I E + C 0 56A 4 18,-2.4 18,-2.0 -2,-0.4 3,-0.2 -0.993 12.0 168.2-119.4 122.7 25.7 17.8 -5.4 39 37 A V S S+ 0 0 118 -2,-0.5 2,-0.5 1,-0.3 -1,-0.1 0.842 78.2 20.0 -98.7 -47.3 27.1 21.3 -4.9 40 38 A D > - 0 0 80 1,-0.1 3,-1.3 14,-0.1 -1,-0.3 -0.947 67.8-160.1-126.6 107.4 24.2 23.0 -2.8 41 39 A V G > S+ 0 0 29 -2,-0.5 3,-1.5 1,-0.3 7,-0.2 0.881 89.2 55.4 -52.9 -44.9 21.9 20.4 -1.1 42 40 A E G 3 S+ 0 0 111 1,-0.3 -1,-0.3 11,-0.1 11,-0.0 0.686 115.4 38.6 -64.9 -18.7 19.0 22.8 -0.7 43 41 A N G < S+ 0 0 133 -3,-1.3 2,-0.5 5,-0.0 -1,-0.3 0.019 94.7 104.7-122.8 28.9 18.9 23.6 -4.4 44 42 A S <> - 0 0 21 -3,-1.5 4,-1.7 1,-0.1 5,-0.1 -0.939 46.5-167.5-123.3 118.6 19.7 20.2 -5.8 45 43 A E H > S+ 0 0 155 -2,-0.5 4,-2.5 2,-0.2 5,-0.2 0.875 95.8 53.4 -66.2 -38.8 17.2 17.8 -7.5 46 44 A I H > S+ 0 0 51 1,-0.2 4,-2.3 2,-0.2 6,-0.3 0.917 104.8 54.9 -68.5 -34.3 19.6 15.0 -7.4 47 45 A A H >>S+ 0 0 3 2,-0.2 4,-1.4 1,-0.2 5,-1.2 0.926 109.7 48.1 -56.7 -44.8 20.1 15.5 -3.6 48 46 A K H <5S+ 0 0 90 -4,-1.7 3,-0.4 1,-0.2 -2,-0.2 0.933 110.5 51.5 -60.4 -46.0 16.3 15.2 -3.2 49 47 A K H <5S+ 0 0 112 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.897 120.1 33.1 -59.7 -42.3 16.2 12.0 -5.3 50 48 A I H <5S- 0 0 55 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.525 105.6-120.3 -97.8 -3.0 19.0 10.2 -3.4 51 49 A G T <5 + 0 0 54 -4,-1.4 -3,-0.2 -3,-0.4 2,-0.1 0.627 52.8 162.4 75.9 17.6 18.3 11.7 0.1 52 50 A A < + 0 0 10 -5,-1.2 -1,-0.2 -6,-0.3 -2,-0.1 -0.438 21.1 178.2 -75.5 141.1 21.7 13.3 0.5 53 51 A K + 0 0 148 -2,-0.1 -1,-0.1 1,-0.1 -12,-0.1 0.358 65.8 60.8-123.4 3.5 22.1 16.0 3.1 54 52 A V S S- 0 0 60 -13,-0.1 -1,-0.1 -7,-0.1 -14,-0.1 -0.998 87.5-116.5-127.5 133.2 25.8 16.8 2.8 55 53 A P + 0 0 66 0, 0.0 2,-0.3 0, 0.0 -16,-0.2 -0.254 66.0 76.0 -66.8 158.3 27.2 18.1 -0.6 56 54 A G E S- C 0 38A 18 -18,-2.0 -18,-2.4 2,-0.0 2,-0.4 -0.934 82.6 -33.5 140.9-160.8 29.7 16.2 -2.6 57 55 A K E - C 0 37A 96 -43,-0.4 -43,-3.1 -2,-0.3 2,-0.3 -0.802 53.8-179.0 -98.9 136.2 30.0 13.2 -4.8 58 56 A Y E -BC 13 36A 6 -22,-2.3 -22,-2.5 -2,-0.4 2,-0.4 -0.966 22.3-133.4-133.0 149.4 27.8 10.1 -4.4 59 57 A A E - C 0 35A 1 -47,-2.4 -24,-0.2 -2,-0.3 -25,-0.2 -0.863 4.8-152.8 -97.5 137.1 27.4 6.8 -6.1 60 58 A I E S+ 0 0 74 -26,-1.8 2,-0.4 -27,-0.8 -26,-0.2 0.928 88.0 37.1 -68.9 -42.8 23.9 5.6 -7.0 61 59 A R E + C 0 33A 138 -28,-2.3 -28,-2.8 -3,-0.1 2,-0.4 -0.928 67.9 175.7-116.3 131.9 25.0 1.9 -6.7 62 60 A V E C 0 32A 32 -2,-0.4 -30,-0.2 -30,-0.2 -32,-0.0 -0.999 360.0 360.0-135.3 134.1 27.5 0.5 -4.2 63 61 A R 0 0 68 -32,-2.7 -32,-0.4 -2,-0.4 -33,-0.1 -0.864 360.0 360.0-108.3 360.0 28.6 -3.1 -3.7