==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-SEP-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIVIRAL PROTEIN 18-MAY-11 3S3Y . COMPND 2 MOLECULE: TANDEM CYANOVIRIN-N DIMER CVN2L0; . SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC ELLIPSOSPORUM; . AUTHOR J.R.KEEFFE,P.J.BJORKMAN,S.L.MAYO . 101 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8752.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 68.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 40 39.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 208 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -5.6 20.7 -1.0 -4.9 2 2 A G + 0 0 75 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.211 360.0 171.1 64.6-114.6 23.0 -4.0 -4.3 3 3 A K > + 0 0 153 -2,-0.2 3,-1.5 1,-0.1 4,-0.4 0.690 20.6 152.1 68.9 23.1 22.8 -7.0 -6.7 4 4 A F G > + 0 0 95 1,-0.2 3,-1.6 2,-0.2 4,-0.1 0.845 61.1 68.4 -47.7 -39.6 25.9 -8.7 -5.1 5 5 A S G > S+ 0 0 72 1,-0.3 3,-0.9 2,-0.2 -1,-0.2 0.717 85.4 69.6 -63.1 -25.1 24.6 -12.2 -6.2 6 6 A Q G < S+ 0 0 151 -3,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.772 114.5 23.8 -60.5 -33.1 25.1 -11.4 -9.9 7 7 A T G < S+ 0 0 69 -3,-1.6 16,-2.8 -4,-0.4 2,-0.3 -0.024 114.5 74.7-127.7 30.7 28.9 -11.5 -9.6 8 8 A a E < -A 22 0A 19 -3,-0.9 2,-0.3 14,-0.2 14,-0.2 -0.924 52.0-175.9-133.5 160.3 29.4 -13.6 -6.5 9 9 A Y E +A 21 0A 107 12,-2.6 12,-2.2 -2,-0.3 -3,-0.0 -0.925 58.8 45.6-146.3 174.0 29.2 -17.3 -5.7 10 10 A N E S+ 0 0 128 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.820 73.1 174.6 57.8 34.7 29.5 -19.7 -2.7 11 11 A S E + 0 0 57 9,-0.1 2,-0.3 10,-0.1 9,-0.2 -0.463 2.9 169.8 -70.9 137.7 27.3 -17.4 -0.7 12 12 A A E -A 19 0A 60 7,-2.3 7,-3.0 -2,-0.2 2,-0.4 -0.986 25.6-143.2-149.1 154.8 26.2 -18.6 2.7 13 13 A I E +A 18 0A 94 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.972 15.2 176.6-115.0 131.0 24.6 -17.2 5.9 14 14 A Q E > S-A 17 0A 166 3,-2.0 3,-1.9 -2,-0.4 2,-0.4 -0.950 70.0 -46.3-133.3 111.5 25.6 -18.2 9.4 15 15 A G T 3 S- 0 0 73 -2,-0.4 20,-0.0 1,-0.3 -2,-0.0 -0.509 124.8 -20.0 63.9-120.2 23.7 -16.3 12.0 16 16 A S T 3 S+ 0 0 28 -2,-0.4 20,-3.3 -3,-0.1 2,-0.6 0.386 116.7 100.9 -98.8 2.9 23.7 -12.6 11.0 17 17 A V E < -AB 14 35A 45 -3,-1.9 -3,-2.0 18,-0.2 2,-0.5 -0.814 52.7-160.8-107.5 121.1 26.7 -12.9 8.8 18 18 A L E -AB 13 34A 29 16,-2.5 16,-2.2 -2,-0.6 2,-0.4 -0.838 11.5-172.8 -86.6 125.0 26.7 -13.2 4.9 19 19 A T E +AB 12 33A 49 -7,-3.0 -7,-2.3 -2,-0.5 2,-0.3 -0.976 12.7 161.5-115.7 138.3 29.9 -14.6 3.4 20 20 A S E - B 0 32A 5 12,-2.4 12,-2.4 -2,-0.4 2,-0.6 -0.977 38.4-127.5-150.0 160.1 30.5 -14.6 -0.4 21 21 A T E -AB 9 31A 16 -12,-2.2 -12,-2.6 -2,-0.3 2,-0.3 -0.967 39.5-171.8-112.8 116.0 33.2 -14.9 -3.0 22 22 A a E -AB 8 30A 31 8,-3.0 8,-2.2 -2,-0.6 -14,-0.2 -0.862 25.0-106.8-124.4 144.5 33.0 -12.0 -5.4 23 23 A E E - B 0 29A 100 -16,-2.8 6,-0.3 -2,-0.3 2,-0.2 -0.453 29.2-139.7 -67.7 130.7 34.5 -10.9 -8.7 24 24 A R > - 0 0 163 4,-2.8 3,-1.8 -2,-0.2 -1,-0.1 -0.620 26.9-109.9 -81.3 150.4 37.0 -8.1 -8.6 25 25 A T T 3 S+ 0 0 139 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.847 116.4 48.0 -42.6 -42.7 36.9 -5.5 -11.4 26 26 A N T 3 S- 0 0 163 1,-0.0 -1,-0.3 0, 0.0 -3,-0.0 0.009 127.9 -82.0-106.0 31.5 40.2 -6.8 -12.8 27 27 A G S < S+ 0 0 62 -3,-1.8 -2,-0.1 1,-0.3 -1,-0.0 -0.114 89.9 103.2 114.2 -35.3 39.6 -10.5 -12.9 28 28 A G - 0 0 36 -5,-0.1 -4,-2.8 1,-0.1 2,-0.4 0.008 59.9-124.3 -71.8-179.8 40.2 -12.1 -9.4 29 29 A Y E -B 23 0A 112 -6,-0.3 2,-0.4 2,-0.0 -6,-0.2 -0.958 18.9-166.6-122.7 147.8 37.9 -13.3 -6.8 30 30 A N E -B 22 0A 93 -8,-2.2 -8,-3.0 -2,-0.4 2,-0.6 -0.999 13.7-141.8-131.1 135.7 37.8 -12.1 -3.1 31 31 A T E +B 21 0A 88 -2,-0.4 2,-0.3 -10,-0.3 -10,-0.2 -0.866 34.0 160.0 -96.7 122.2 35.9 -13.8 -0.2 32 32 A S E -B 20 0A 62 -12,-2.4 -12,-2.4 -2,-0.6 2,-0.3 -0.888 26.2-142.5-136.2 169.2 34.4 -11.3 2.3 33 33 A S E -B 19 0A 75 -2,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.934 5.4-163.7-130.8 150.3 31.7 -11.1 5.0 34 34 A I E -B 18 0A 93 -16,-2.2 -16,-2.5 -2,-0.3 2,-0.7 -0.997 20.3-132.6-132.5 137.6 29.2 -8.5 6.1 35 35 A D E > -B 17 0A 73 -2,-0.4 3,-0.9 -18,-0.2 -18,-0.2 -0.822 13.1-163.9 -90.7 114.1 27.3 -8.6 9.4 36 36 A L G >> + 0 0 37 -20,-3.3 4,-1.5 -2,-0.7 3,-1.0 0.465 69.3 92.8 -78.5 -0.8 23.6 -7.9 8.7 37 37 A N G 34 S+ 0 0 116 1,-0.2 -1,-0.2 -21,-0.2 -20,-0.1 0.774 87.3 48.1 -62.6 -24.4 22.8 -7.1 12.3 38 38 A S G <4 S+ 0 0 84 -3,-0.9 -1,-0.2 1,-0.1 -2,-0.1 0.569 119.2 35.9 -93.0 -7.2 23.4 -3.3 11.7 39 39 A V T <4 S+ 0 0 53 -3,-1.0 11,-2.9 -4,-0.1 2,-0.3 0.506 111.2 55.5-125.5 -9.2 21.3 -3.1 8.5 40 40 A I E < -C 49 0B 40 -4,-1.5 2,-0.3 9,-0.3 9,-0.2 -0.962 59.7-174.9-130.4 142.3 18.3 -5.4 9.0 41 41 A E E -C 48 0B 67 7,-2.8 7,-2.8 -2,-0.3 2,-0.7 -0.969 29.0-117.3-137.3 153.7 15.8 -5.5 11.8 42 42 A N E -C 47 0B 116 -2,-0.3 2,-0.7 5,-0.2 5,-0.2 -0.838 30.0-175.6 -85.3 109.6 12.9 -7.7 13.0 43 43 A V E > S-C 46 0B 66 3,-2.6 3,-1.9 -2,-0.7 -2,-0.0 -0.933 72.9 -36.8-108.0 106.9 9.7 -5.6 12.9 44 44 A D T 3 S- 0 0 172 -2,-0.7 -1,-0.1 1,-0.3 3,-0.1 0.827 126.1 -41.1 48.4 40.3 6.8 -7.6 14.4 45 45 A G T 3 S+ 0 0 69 1,-0.2 2,-0.5 0, 0.0 -1,-0.3 0.413 118.8 101.1 96.9 -1.4 8.0 -10.8 12.8 46 46 A S E < S-C 43 0B 51 -3,-1.9 -3,-2.6 2,-0.0 2,-0.3 -0.970 71.4-123.4-121.3 126.5 9.1 -9.6 9.4 47 47 A L E +C 42 0B 140 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.557 38.0 178.1 -65.7 127.1 12.7 -8.8 8.4 48 48 A K E -C 41 0B 97 -7,-2.8 -7,-2.8 -2,-0.3 2,-0.2 -0.929 36.2-106.4-128.4 147.3 13.0 -5.2 7.2 49 49 A W E -C 40 0B 191 -2,-0.3 -9,-0.3 -9,-0.2 3,-0.1 -0.572 48.8-108.7 -64.6 138.9 15.9 -3.1 6.0 50 50 A Q - 0 0 78 -11,-2.9 3,-0.1 -2,-0.2 -1,-0.1 -0.535 41.1 -98.3 -67.9 143.4 16.7 -0.6 8.8 51 51 A P - 0 0 98 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.167 45.0 -92.4 -58.6 155.0 15.7 2.9 8.0 52 52 A S S S- 0 0 79 1,-0.2 5,-0.1 -3,-0.1 4,-0.0 -0.161 70.2 -56.6 -56.3 159.3 18.4 5.3 6.7 53 53 A N > - 0 0 122 1,-0.2 3,-2.0 2,-0.1 4,-0.5 -0.103 48.9-125.4 -41.9 134.5 20.1 7.5 9.3 54 54 A F G >> S+ 0 0 110 1,-0.3 4,-1.3 2,-0.2 3,-0.8 0.745 106.8 72.1 -59.5 -22.1 17.6 9.5 11.4 55 55 A I G 34 S+ 0 0 115 1,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.733 90.6 60.0 -65.6 -17.3 19.6 12.7 10.4 56 56 A E G <4 S+ 0 0 151 -3,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.804 117.5 27.9 -80.2 -27.8 18.2 12.3 6.9 57 57 A T T <4 S+ 0 0 53 -3,-0.8 17,-2.8 -4,-0.5 2,-0.3 0.382 116.5 66.6-113.1 -1.2 14.5 12.6 8.1 58 58 A b E < -D 73 0C 14 -4,-1.3 2,-0.3 15,-0.2 15,-0.3 -0.902 58.0-171.0-123.1 153.1 15.0 14.7 11.2 59 59 A R E +D 72 0C 120 13,-3.1 13,-2.9 -2,-0.3 -3,-0.0 -0.898 58.6 33.0-139.3 166.0 16.2 18.3 11.8 60 60 A N E - 0 0 101 -2,-0.3 -1,-0.1 11,-0.2 10,-0.1 0.827 69.4-174.3 57.3 40.4 17.2 20.7 14.6 61 61 A T E + 0 0 68 -3,-0.1 2,-0.3 10,-0.1 10,-0.2 -0.423 13.7 158.5 -65.2 140.4 18.7 17.9 16.7 62 62 A Q E -D 70 0C 107 8,-2.3 8,-2.9 -2,-0.1 2,-0.6 -0.972 47.1-107.7-154.8 155.2 19.8 19.3 20.1 63 63 A L E -D 69 0C 103 -2,-0.3 2,-0.6 6,-0.2 6,-0.2 -0.856 33.4-158.8 -83.8 120.2 20.5 18.2 23.6 64 64 A A E >> -D 68 0C 45 4,-3.6 4,-1.4 -2,-0.6 3,-0.6 -0.915 60.5 -32.8-102.3 115.5 17.6 19.3 25.8 65 65 A G T 34 S- 0 0 73 -2,-0.6 -2,-0.1 1,-0.2 0, 0.0 -0.581 114.6 -37.2 75.8-134.9 18.7 19.5 29.4 66 66 A S T 34 S+ 0 0 114 -2,-0.3 -1,-0.2 1,-0.0 -3,-0.0 0.681 134.0 4.2-100.3 -20.0 21.3 17.0 30.5 67 67 A S T <4 S+ 0 0 14 -3,-0.6 20,-2.9 20,-0.0 2,-0.6 0.417 91.8 111.9-146.2 -0.2 20.3 13.8 28.6 68 68 A E E < -DE 64 86C 37 -4,-1.4 -4,-3.6 18,-0.2 2,-0.7 -0.728 49.4-150.4 -91.6 123.9 17.4 14.4 26.2 69 69 A L E -DE 63 85C 38 16,-2.8 16,-1.8 -2,-0.6 2,-0.4 -0.822 22.9-173.5 -83.8 117.9 17.9 14.3 22.4 70 70 A A E +DE 62 84C 21 -8,-2.9 -8,-2.3 -2,-0.7 2,-0.3 -0.896 16.2 137.6-114.2 139.3 15.3 16.6 20.9 71 71 A A E - E 0 83C 13 12,-2.1 12,-2.3 -2,-0.4 2,-0.5 -0.955 50.0-106.4-158.4 172.1 14.5 17.1 17.2 72 72 A E E -DE 59 82C 58 -13,-2.9 -13,-3.1 -2,-0.3 2,-0.4 -0.982 41.2-168.6-105.0 129.4 11.8 17.5 14.6 73 73 A b E -DE 58 81C 29 8,-2.4 8,-2.2 -2,-0.5 2,-0.3 -0.929 24.0-111.0-122.4 146.2 11.2 14.3 12.5 74 74 A K E - E 0 80C 85 -17,-2.8 6,-0.2 -2,-0.4 2,-0.1 -0.484 28.9-145.5 -68.0 125.2 9.3 13.5 9.4 75 75 A T > - 0 0 37 4,-2.8 3,-2.4 -2,-0.3 -1,-0.0 -0.442 36.2 -98.6 -80.5 168.4 6.3 11.2 9.9 76 76 A R T 3 S+ 0 0 209 1,-0.3 -1,-0.1 2,-0.1 -2,-0.1 0.812 128.1 64.5 -59.9 -25.6 5.4 8.7 7.1 77 77 A A T 3 S- 0 0 70 2,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.279 119.7-114.9 -75.7 9.9 2.9 11.4 6.1 78 78 A Q S < S+ 0 0 98 -3,-2.4 2,-0.3 1,-0.2 -2,-0.1 0.645 75.0 127.0 64.8 20.1 5.9 13.6 5.3 79 79 A Q - 0 0 103 -6,-0.1 -4,-2.8 -4,-0.0 2,-0.5 -0.807 60.2-120.3-104.0 147.2 5.1 16.2 8.1 80 80 A F E +E 74 0C 65 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.745 34.3 176.9 -87.5 131.0 7.5 17.3 10.7 81 81 A V E -E 73 0C 70 -8,-2.2 -8,-2.4 -2,-0.5 2,-0.2 -0.941 34.0 -99.7-127.5 155.7 6.6 16.7 14.3 82 82 A S E +E 72 0C 104 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.488 46.6 169.7 -73.1 140.6 8.4 17.3 17.7 83 83 A T E -E 71 0C 71 -12,-2.3 -12,-2.1 -2,-0.2 2,-0.3 -0.970 13.2-174.7-149.4 157.4 10.1 14.3 19.2 84 84 A K E -E 70 0C 140 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.981 5.4-168.1-153.2 157.8 12.4 13.5 22.0 85 85 A I E -E 69 0C 94 -16,-1.8 -16,-2.8 -2,-0.3 2,-0.8 -0.988 28.1-120.2-149.7 135.5 14.3 10.5 23.5 86 86 A N E > -E 68 0C 51 -2,-0.3 3,-2.0 -18,-0.2 4,-0.3 -0.723 16.4-163.1 -81.9 109.3 16.1 10.1 26.8 87 87 A L G >> S+ 0 0 63 -20,-2.9 4,-2.9 -2,-0.8 3,-1.1 0.717 84.9 75.2 -68.0 -21.3 19.7 9.2 26.0 88 88 A D G 34 S+ 0 0 112 -21,-0.3 -1,-0.3 1,-0.2 -20,-0.1 0.515 79.9 76.5 -59.0 -9.8 20.2 8.1 29.7 89 89 A D G <4 S- 0 0 104 -3,-2.0 -1,-0.2 1,-0.1 -2,-0.2 0.889 122.3 -5.3 -67.8 -38.1 18.1 5.0 28.6 90 90 A H T <4 S+ 0 0 88 -3,-1.1 11,-3.7 -4,-0.3 2,-0.6 0.476 106.1 97.2-138.8 -12.6 21.1 3.5 26.8 91 91 A I E < -F 100 0D 65 -4,-2.9 2,-0.3 9,-0.2 9,-0.2 -0.800 52.6-176.2 -94.0 125.7 24.1 5.8 26.8 92 92 A A E -F 99 0D 18 7,-2.7 7,-2.2 -2,-0.6 2,-0.8 -0.808 32.5-124.1-118.4 154.8 26.6 5.0 29.6 93 93 A N E -F 98 0D 119 -2,-0.3 2,-0.9 5,-0.2 5,-0.2 -0.912 29.2-174.3 -93.7 104.8 29.8 6.4 30.9 94 94 A I E > S-F 97 0D 78 3,-2.8 3,-1.1 -2,-0.8 -2,-0.0 -0.844 72.9 -42.1-103.2 91.3 32.2 3.4 30.8 95 95 A D T 3 S- 0 0 164 -2,-0.9 -1,-0.1 1,-0.3 3,-0.1 0.855 124.1 -36.9 55.9 42.9 35.3 4.7 32.5 96 96 A G T 3 S+ 0 0 66 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.375 120.6 100.5 98.9 -6.9 35.3 8.1 30.8 97 97 A T E < S-F 94 0D 77 -3,-1.1 -3,-2.8 2,-0.0 2,-0.3 -0.956 72.4-122.7-118.7 131.8 34.0 6.9 27.4 98 98 A L E +F 93 0D 141 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.569 38.8 176.0 -71.8 125.1 30.4 7.1 26.1 99 99 A K E -F 92 0D 103 -7,-2.2 -7,-2.7 -2,-0.3 2,-0.3 -0.993 31.7-114.7-137.5 138.8 29.1 3.7 25.1 100 100 A Y E F 91 0D 175 -2,-0.4 -9,-0.2 -9,-0.2 -10,-0.0 -0.569 360.0 360.0 -73.4 128.1 25.8 2.4 23.9 101 101 A E 0 0 133 -11,-3.7 -10,-0.2 -2,-0.3 -1,-0.2 0.455 360.0 360.0-120.6 360.0 24.1 -0.0 26.3