==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 18-JAN-04 1S4T . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.A.KOZIN,C.LEPAGE,G.HUI BON HOA,H.RABESONA,A.K.MAZUR, . 21 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2230.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 42.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 23.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 135 A S 0 0 27 0, 0.0 12,-0.1 0, 0.0 16,-0.1 0.000 360.0 360.0 360.0-179.2 1.5 -1.7 1.7 2 136 A R - 0 0 100 15,-0.1 2,-0.3 4,-0.0 10,-0.1 -0.999 360.0-124.4-135.2 133.4 4.0 0.1 -0.5 3 137 A P + 0 0 102 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.597 38.9 156.6 -75.0 134.6 5.4 3.6 -0.3 4 138 A L S S- 0 0 83 -2,-0.3 3,-0.1 0, 0.0 -2,-0.0 -0.085 76.2 -97.3-141.3 28.9 4.9 5.4 -3.6 5 139 A I + 0 0 133 1,-0.1 2,-0.5 5,-0.0 0, 0.0 0.955 64.3 178.2 -12.7 110.6 5.1 8.4 -2.0 6 140 A H >> - 0 0 29 -4,-0.1 3,-1.2 0, 0.0 4,-1.0 -0.565 31.2-119.0-113.1 64.8 1.3 8.3 -1.9 7 141 A F T 34 - 0 0 193 -2,-0.5 2,-0.0 1,-0.3 0, 0.0 -0.172 66.5 -38.7 -35.6 126.3 0.3 11.4 -0.1 8 142 A G T 34 S+ 0 0 75 2,-0.0 -1,-0.3 1,-0.0 -3,-0.0 -0.755 113.0 55.5-143.1 61.9 -1.1 10.6 2.2 9 143 A N T <4 - 0 0 131 -3,-1.2 -2,-0.1 -2,-0.0 -1,-0.0 0.443 62.8-144.0-143.6 -19.1 -3.7 8.0 3.1 10 144 A D < + 0 0 80 -4,-1.0 3,-0.4 1,-0.1 -3,-0.1 0.860 45.0 147.8 59.6 48.6 -1.9 4.8 2.1 11 145 A Y > + 0 0 175 1,-0.2 3,-0.6 -5,-0.2 -1,-0.1 0.491 52.9 75.8-101.1 -7.4 -5.1 3.2 0.9 12 146 A E G >> + 0 0 23 1,-0.2 3,-2.4 -10,-0.1 4,-1.0 0.328 63.4 111.5 -82.5 7.4 -3.7 1.1 -1.9 13 147 A D G >4 + 0 0 26 -3,-0.4 3,-1.1 1,-0.3 -1,-0.2 0.841 66.4 60.5 -52.5 -40.9 -2.3 -1.2 0.7 14 148 A R G <4 S+ 0 0 95 -3,-0.6 -1,-0.3 1,-0.3 3,-0.2 0.632 110.8 41.1 -69.3 -13.8 -4.6 -4.1 -0.2 15 149 A Y G <4 S+ 0 0 189 -3,-2.4 -1,-0.3 1,-0.1 -2,-0.2 0.509 122.5 39.7-107.4 -11.9 -3.1 -4.1 -3.7 16 150 A Y S << S+ 0 0 88 -3,-1.1 2,-0.9 -4,-1.0 -2,-0.2 -0.216 72.2 131.1-128.4 41.8 0.5 -3.7 -2.5 17 151 A R > + 0 0 120 -3,-0.2 3,-1.7 1,-0.2 2,-0.5 -0.337 14.5 144.2 -92.8 51.5 0.5 -5.8 0.5 18 152 A E T 3 S+ 0 0 114 -2,-0.9 -1,-0.2 1,-0.3 3,-0.1 -0.028 81.9 35.3 -77.4 33.5 3.7 -7.6 -0.4 19 153 A N T 3 S+ 0 0 106 -2,-0.5 2,-0.3 1,-0.3 -1,-0.3 0.162 115.9 55.1-169.6 13.9 4.4 -7.7 3.3 20 154 A M < 0 0 111 -3,-1.7 -1,-0.3 -7,-0.1 -3,-0.1 -0.991 360.0 360.0-159.3 146.7 1.0 -8.1 4.9 21 155 A Y 0 0 230 -2,-0.3 -3,-0.1 -3,-0.1 -7,-0.0 -0.548 360.0 360.0 -62.0 360.0 -2.1 -10.3 5.0