==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN, TRANSLATION 29-JAN-04 1S7A . COMPND 2 MOLECULE: LUPUS LA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ALFANO,D.SANFELICE,J.BABON,G.KELLY,A.JACKS,S.CURRY, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7491.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 36.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 229 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 123.1 -20.7 -23.7 -5.0 2 2 A A + 0 0 81 2,-0.0 0, 0.0 3,-0.0 0, 0.0 -0.101 360.0 178.0-172.2 -78.0 -18.6 -21.6 -2.6 3 3 A E + 0 0 192 2,-0.0 3,-0.1 3,-0.0 -1,-0.0 0.967 23.5 163.1 52.4 56.2 -20.2 -18.9 -0.4 4 4 A N - 0 0 163 1,-0.2 2,-0.2 2,-0.0 -2,-0.0 0.973 51.6 -56.2 -69.4 -81.8 -16.9 -18.1 1.4 5 5 A G - 0 0 63 3,-0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.545 52.6 -88.4-141.1-152.0 -17.4 -14.7 2.9 6 6 A D - 0 0 131 -2,-0.2 -3,-0.0 -3,-0.1 -2,-0.0 0.271 50.0-120.3-114.3 10.6 -18.3 -11.1 1.9 7 7 A N S >> S+ 0 0 120 1,-0.1 4,-0.8 3,-0.1 3,-0.6 0.706 73.6 134.0 60.1 14.2 -14.7 -9.9 1.1 8 8 A E H >> + 0 0 141 1,-0.2 4,-1.3 2,-0.2 3,-0.9 0.876 58.2 67.8 -64.2 -34.0 -15.3 -7.3 3.8 9 9 A K H 3> S+ 0 0 176 1,-0.3 4,-2.6 2,-0.2 -1,-0.2 0.899 93.0 59.7 -53.9 -38.5 -11.9 -8.0 5.3 10 10 A M H <> S+ 0 0 89 -3,-0.6 4,-2.7 1,-0.2 -1,-0.3 0.891 98.0 59.6 -59.2 -36.5 -10.3 -6.5 2.2 11 11 A A H X S+ 0 0 35 -4,-2.0 4,-1.2 2,-0.2 3,-0.8 0.973 109.4 47.5 -63.7 -49.0 1.7 1.7 6.5 21 21 A I H 3X S+ 0 0 9 -4,-1.9 4,-2.6 1,-0.3 5,-0.5 0.907 107.5 59.2 -58.2 -35.8 2.9 3.7 3.5 22 22 A E H 3X S+ 0 0 72 -4,-2.2 4,-3.6 1,-0.2 6,-0.4 0.870 96.3 62.4 -60.8 -34.7 1.9 6.8 5.5 23 23 A Y H << S+ 0 0 82 -4,-1.5 6,-0.9 -3,-0.8 -1,-0.2 0.939 112.0 34.6 -59.9 -44.7 4.3 5.7 8.3 24 24 A Y H < S+ 0 0 3 -4,-1.2 6,-0.4 -3,-0.3 -2,-0.2 0.900 137.1 23.9 -77.7 -39.7 7.4 6.1 6.0 25 25 A F H < S+ 0 0 0 -4,-2.6 2,-6.5 -5,-0.2 -3,-0.2 0.678 89.0 106.0 -97.6 -21.2 6.0 9.0 3.9 26 26 A G S < S- 0 0 13 -4,-3.6 2,-0.2 -5,-0.5 -1,-0.1 0.099 107.0 -96.5 -52.9 41.7 3.6 10.4 6.5 27 27 A D S S+ 0 0 47 -2,-6.5 73,-0.4 1,-0.2 -1,-0.2 0.325 117.4 85.5 62.5 -17.9 6.1 13.3 7.1 28 28 A F S S+ 0 0 102 -6,-0.4 4,-0.4 -2,-0.2 -1,-0.2 0.942 94.4 33.2 -80.2 -48.9 7.4 11.3 10.1 29 29 A N S > S+ 0 0 9 -6,-0.9 3,-0.9 -7,-0.3 -4,-0.2 0.829 109.6 65.8 -76.8 -32.4 9.9 9.0 8.3 30 30 A L G > S+ 0 0 15 -6,-0.4 3,-1.3 1,-0.3 -1,-0.2 0.947 97.9 53.6 -56.6 -47.3 10.9 11.5 5.6 31 31 A P G 3 S+ 0 0 41 0, 0.0 -1,-0.3 0, 0.0 -2,-0.2 0.760 132.0 16.4 -59.1 -22.5 12.6 13.8 8.1 32 32 A R G < S+ 0 0 189 -3,-0.9 2,-0.9 -4,-0.4 -2,-0.2 -0.203 87.1 134.9-145.4 49.1 14.5 10.7 9.2 33 33 A D <> + 0 0 2 -3,-1.3 4,-1.4 1,-0.2 5,-0.1 -0.794 16.1 166.5-102.6 97.8 14.2 8.1 6.4 34 34 A K H > S+ 0 0 151 -2,-0.9 4,-1.0 2,-0.2 -1,-0.2 0.948 83.3 39.7 -75.0 -46.5 17.6 6.5 5.7 35 35 A F H >> S+ 0 0 36 2,-0.2 4,-1.7 1,-0.2 3,-0.5 0.925 114.0 53.8 -68.7 -42.6 16.3 3.7 3.6 36 36 A L H 3> S+ 0 0 0 1,-0.3 4,-3.1 2,-0.2 5,-0.3 0.920 103.1 58.1 -59.5 -39.6 13.7 5.8 1.9 37 37 A K H 3X S+ 0 0 73 -4,-1.4 4,-2.2 1,-0.2 -1,-0.3 0.870 103.6 54.0 -58.8 -33.0 16.4 8.2 0.9 38 38 A E H < S- 0 0 123 -4,-0.7 3,-0.7 3,-0.2 -1,-0.2 -0.754 118.4 -12.3-166.1 114.4 16.6 7.1 -9.9 44 44 A E T 3 S- 0 0 139 -3,-0.2 3,-0.1 1,-0.2 -3,-0.1 0.145 102.0 -92.6 81.1 -24.2 13.6 9.5 -10.4 45 45 A G T 3 S+ 0 0 9 -6,-0.3 2,-0.4 1,-0.3 46,-0.4 0.302 82.8 142.9 99.2 -11.2 12.6 8.9 -6.8 46 46 A W < - 0 0 38 -3,-0.7 -1,-0.3 -6,-0.1 44,-0.2 -0.480 35.5-158.3 -67.2 120.7 10.2 6.1 -7.8 47 47 A V E -A 89 0A 0 42,-3.8 42,-3.6 -2,-0.4 2,-0.3 -0.762 12.2-125.5-101.9 148.8 10.3 3.4 -5.1 48 48 A P E >> -A 88 0A 20 0, 0.0 3,-1.6 0, 0.0 4,-0.8 -0.709 16.7-126.1 -92.3 140.0 9.3 -0.2 -5.6 49 49 A L H 3> S+ 0 0 2 38,-0.8 4,-4.6 -2,-0.3 5,-0.2 0.594 102.4 83.8 -62.4 -1.5 6.7 -1.8 -3.4 50 50 A E H 3> S+ 0 0 99 2,-0.2 4,-0.9 37,-0.2 -1,-0.3 0.950 89.4 48.2 -66.7 -42.4 9.4 -4.5 -2.9 51 51 A I H <> S+ 0 0 20 -3,-1.6 4,-1.0 1,-0.2 -1,-0.2 0.903 120.0 39.4 -62.2 -38.1 11.0 -2.2 -0.2 52 52 A M H < S+ 0 0 0 -4,-0.8 6,-0.4 1,-0.2 7,-0.4 0.903 118.6 45.2 -78.8 -43.3 7.5 -1.8 1.3 53 53 A I H < S+ 0 0 27 -4,-4.6 -2,-0.2 1,-0.2 -1,-0.2 0.471 117.1 47.2 -81.6 2.5 6.3 -5.4 0.8 54 54 A K H < S+ 0 0 107 -4,-0.9 2,-0.3 -5,-0.2 -1,-0.2 0.631 90.3 91.1-113.1 -21.9 9.6 -6.8 2.1 55 55 A F S >X S- 0 0 57 -4,-1.0 4,-3.4 -5,-0.3 3,-1.2 -0.546 80.3-129.4 -75.5 135.4 9.9 -4.6 5.3 56 56 A N H 3> S+ 0 0 105 -2,-0.3 4,-0.8 1,-0.3 -1,-0.1 0.778 104.1 73.9 -56.2 -21.8 8.4 -6.3 8.4 57 57 A R H 34 S+ 0 0 119 1,-0.2 -1,-0.3 2,-0.1 -5,-0.1 0.935 121.3 5.9 -59.6 -44.8 6.6 -2.9 8.8 58 58 A L H X> S+ 0 0 0 -3,-1.2 3,-2.7 -6,-0.4 4,-0.6 0.713 118.3 74.1-110.1 -30.7 4.2 -3.7 5.9 59 59 A N H 3< S+ 0 0 60 -4,-3.4 -3,-0.2 -7,-0.4 -2,-0.1 0.784 90.5 64.6 -55.8 -22.2 5.1 -7.3 5.0 60 60 A R T 3< S+ 0 0 186 -4,-0.8 -1,-0.3 -5,-0.4 -2,-0.1 0.366 112.5 33.0 -83.3 9.3 3.3 -8.3 8.2 61 61 A L T <4 S- 0 0 70 -3,-2.7 -2,-0.1 -44,-0.0 -3,-0.1 0.460 132.8 -23.4-124.9 -89.9 0.0 -7.0 6.7 62 62 A T < + 0 0 14 -4,-0.6 3,-0.1 -49,-0.1 -3,-0.1 0.881 54.2 169.6 -95.5 -72.7 -0.7 -7.1 2.9 63 63 A T + 0 0 27 1,-0.2 2,-0.9 -5,-0.1 3,-0.1 0.474 36.5 132.2 73.3 -3.0 2.6 -7.4 1.0 64 64 A D >> - 0 0 92 1,-0.2 4,-4.7 2,-0.1 5,-0.5 -0.701 52.4-152.0 -85.2 107.6 0.5 -8.2 -2.1 65 65 A F H >5S+ 0 0 90 -2,-0.9 4,-1.9 1,-0.2 5,-0.3 0.898 99.8 42.7 -44.5 -44.5 1.7 -5.9 -4.9 66 66 A N H >5S+ 0 0 129 2,-0.2 4,-2.0 3,-0.2 -1,-0.2 0.933 121.1 40.0 -71.5 -43.0 -1.8 -6.1 -6.4 67 67 A V H >5S+ 0 0 21 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.929 117.6 48.5 -71.8 -43.6 -3.6 -5.6 -3.1 68 68 A I H X5S+ 0 0 0 -4,-4.7 4,-2.2 2,-0.2 5,-0.3 0.946 115.9 43.0 -63.0 -46.6 -1.1 -3.0 -1.8 69 69 A V H X - 0 0 7 -2,-0.4 3,-1.7 1,-0.2 -1,-0.1 -0.470 27.4-165.3 -65.1 108.8 6.1 14.4 -4.3 93 93 A P T 3 S+ 0 0 100 0, 0.0 -1,-0.2 0, 0.0 -48,-0.0 0.752 90.6 57.4 -66.0 -22.8 9.2 16.5 -4.7 94 94 A S T 3 S+ 0 0 111 -3,-0.1 -2,-0.1 2,-0.1 -3,-0.0 0.454 97.9 75.5 -87.9 1.8 6.9 19.4 -5.5 95 95 A K S < S- 0 0 112 -3,-1.7 2,-0.1 -4,-0.0 -1,-0.0 -0.954 82.6-125.7-118.4 130.3 5.2 19.0 -2.1 96 96 A P - 0 0 114 0, 0.0 -4,-0.1 0, 0.0 -2,-0.1 -0.353 17.6-146.8 -68.9 148.6 6.8 20.1 1.2 97 97 A L - 0 0 59 -2,-0.1 2,-0.2 -70,-0.0 -71,-0.0 -0.968 11.6-157.2-122.8 119.3 7.2 17.6 4.0 98 98 A P - 0 0 78 0, 0.0 2,-0.3 0, 0.0 -68,-0.1 -0.565 18.1-115.4 -92.8 156.5 6.9 18.8 7.5 99 99 A E - 0 0 149 -2,-0.2 -71,-0.2 -69,-0.1 2,-0.1 -0.672 29.3-116.3 -92.0 146.0 8.3 17.1 10.6 100 100 A V - 0 0 65 -73,-0.4 2,-0.2 -2,-0.3 -1,-0.1 -0.486 29.3-116.2 -78.7 150.4 6.0 15.8 13.3 101 101 A T - 0 0 129 -2,-0.1 2,-0.3 1,-0.0 -1,-0.1 -0.608 25.2-124.1 -86.5 146.4 6.2 17.4 16.8 102 102 A D 0 0 141 -2,-0.2 -1,-0.0 1,-0.1 0, 0.0 -0.647 360.0 360.0 -89.3 145.8 7.3 15.2 19.8 103 103 A E 0 0 253 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.817 360.0 360.0 60.3 360.0 5.1 14.9 22.9