==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PLANT PROTEIN 16-FEB-04 1SE9 . COMPND 2 MOLECULE: UBIQUITIN FAMILY; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR B.F.VOLKMAN,B.L.LYTLE,F.C.PETERSON,CENTER FOR EUKARYOTIC . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6923.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 59.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 16.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 223 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 169.1 2.7 0.4 1.4 2 2 A A - 0 0 51 1,-0.1 2,-0.2 2,-0.0 3,-0.1 -0.613 360.0-100.7 -86.6 147.6 5.5 0.4 -1.0 3 3 A E S S+ 0 0 163 -2,-0.3 3,-0.3 1,-0.2 -1,-0.1 -0.504 96.4 4.8 -71.6 134.6 5.1 -1.3 -4.4 4 4 A V S S- 0 0 114 -2,-0.2 2,-2.0 1,-0.2 -1,-0.2 0.972 83.2-126.4 49.7 97.3 6.7 -4.8 -4.6 5 5 A H + 0 0 126 -3,-0.1 2,-0.6 1,-0.1 -1,-0.2 -0.473 50.3 149.1 -76.5 81.2 7.9 -5.7 -1.2 6 6 A N + 0 0 114 -2,-2.0 2,-0.2 -3,-0.3 76,-0.1 -0.829 19.0 133.2-115.4 85.6 11.4 -6.6 -1.7 7 7 A Q - 0 0 46 -2,-0.6 2,-0.6 75,-0.1 74,-0.0 -0.476 68.9 -69.8-110.0-168.7 13.3 -5.7 1.4 8 8 A L E -A 25 0A 16 17,-0.9 17,-3.0 -2,-0.2 2,-0.3 -0.787 52.8-138.2 -95.3 127.7 15.7 -7.8 3.2 9 9 A E E -A 24 0A 87 -2,-0.6 77,-3.6 75,-0.4 2,-0.4 -0.579 16.8-167.8 -91.0 141.6 14.0 -10.7 4.9 10 10 A I E -Ab 23 86A 5 13,-2.7 13,-2.4 -2,-0.3 2,-0.4 -0.980 2.0-169.4-125.5 136.7 14.8 -11.9 8.3 11 11 A K E - b 0 87A 54 75,-2.4 77,-2.9 -2,-0.4 2,-0.5 -0.957 20.4-127.8-122.2 152.4 13.7 -15.1 9.9 12 12 A F E -Ab 20 88A 4 8,-0.5 8,-3.0 -2,-0.4 2,-0.6 -0.846 17.4-167.7-104.4 123.7 14.1 -16.0 13.5 13 13 A R E -Ab 19 89A 95 75,-3.3 77,-2.6 -2,-0.5 6,-0.3 -0.955 18.1-137.2-110.7 123.1 15.7 -19.2 14.7 14 14 A L E > - b 0 90A 18 4,-3.2 3,-2.4 -2,-0.6 77,-0.2 -0.371 23.9-112.1 -73.7 153.5 15.3 -20.1 18.3 15 15 A T T 3 S+ 0 0 86 75,-2.2 -1,-0.1 1,-0.3 76,-0.1 0.731 116.9 64.2 -57.8 -24.8 18.3 -21.4 20.2 16 16 A D T 3 S- 0 0 99 74,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.457 123.1-103.0 -81.8 -1.4 16.4 -24.8 20.4 17 17 A G S < S+ 0 0 51 -3,-2.4 2,-0.3 1,-0.3 -2,-0.1 0.482 81.8 125.6 95.5 3.5 16.7 -25.1 16.6 18 18 A S - 0 0 64 -4,-0.0 -4,-3.2 0, 0.0 -1,-0.3 -0.725 44.2-153.5 -93.1 144.1 13.1 -24.2 15.7 19 19 A D E -A 13 0A 83 -2,-0.3 2,-0.4 -6,-0.3 -6,-0.3 -0.885 9.8-139.3-123.4 154.8 12.6 -21.4 13.2 20 20 A I E -A 12 0A 32 -8,-3.0 -8,-0.5 -2,-0.3 22,-0.0 -0.860 41.9 -90.9-106.7 141.2 9.9 -18.8 12.4 21 21 A G E - 0 0 50 -2,-0.4 -9,-0.2 -10,-0.2 -11,-0.1 -0.182 49.5-101.3 -54.7 141.4 9.0 -18.0 8.8 22 22 A P E - 0 0 67 0, 0.0 2,-0.3 0, 0.0 -11,-0.3 -0.311 35.4-169.0 -68.7 145.5 10.9 -15.0 7.2 23 23 A K E -A 10 0A 98 -13,-2.4 -13,-2.7 -15,-0.1 2,-0.5 -0.893 29.6-104.5-127.2 156.7 9.4 -11.6 6.9 24 24 A A E -A 9 0A 17 -2,-0.3 -15,-0.3 -15,-0.3 -16,-0.1 -0.742 37.7-174.9 -88.3 127.2 10.7 -8.7 4.9 25 25 A F E -A 8 0A 1 -17,-3.0 -17,-0.9 -2,-0.5 2,-0.0 -0.976 19.2-136.6-126.0 117.2 12.3 -6.0 7.0 26 26 A P > - 0 0 50 0, 0.0 3,-1.8 0, 0.0 45,-0.3 -0.369 24.4-120.0 -61.0 149.6 13.5 -2.7 5.7 27 27 A D T 3 S+ 0 0 43 1,-0.3 45,-2.6 44,-0.1 44,-0.4 0.799 114.1 64.3 -61.6 -26.7 16.9 -1.6 7.0 28 28 A A T 3 S+ 0 0 71 43,-0.2 -1,-0.3 42,-0.1 2,-0.2 0.469 76.8 114.4 -79.4 -1.8 15.1 1.4 8.3 29 29 A T < - 0 0 27 -3,-1.8 42,-3.2 1,-0.1 43,-0.4 -0.500 68.8-126.0 -69.3 136.2 13.1 -0.7 10.7 30 30 A T B > -E 70 0B 61 40,-0.3 4,-2.1 -2,-0.2 40,-0.3 -0.546 11.9-125.2 -80.0 150.3 13.8 -0.1 14.3 31 31 A V H > S+ 0 0 0 38,-3.4 4,-3.2 36,-0.4 5,-0.2 0.813 113.1 64.2 -64.7 -26.6 14.8 -3.0 16.5 32 32 A S H > S+ 0 0 44 35,-1.4 4,-2.3 37,-0.4 -1,-0.2 0.953 107.0 40.2 -57.5 -48.9 12.0 -1.8 18.7 33 33 A A H > S+ 0 0 38 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.845 114.8 53.5 -69.4 -34.0 9.5 -2.6 15.9 34 34 A L H X S+ 0 0 0 -4,-2.1 4,-1.7 2,-0.2 -2,-0.2 0.929 109.4 47.5 -63.3 -46.3 11.5 -5.8 15.1 35 35 A K H X S+ 0 0 29 -4,-3.2 4,-1.6 1,-0.2 -2,-0.2 0.908 112.5 50.2 -62.3 -43.6 11.2 -6.9 18.8 36 36 A E H X S+ 0 0 104 -4,-2.3 4,-1.6 1,-0.2 -2,-0.2 0.885 104.9 58.3 -59.3 -42.7 7.4 -6.0 18.6 37 37 A T H X S+ 0 0 28 -4,-2.4 4,-1.5 1,-0.2 -1,-0.2 0.892 104.9 50.2 -56.5 -41.8 7.1 -8.1 15.4 38 38 A V H X S+ 0 0 0 -4,-1.7 4,-3.2 1,-0.2 3,-0.3 0.915 105.1 56.7 -63.9 -43.0 8.4 -11.1 17.3 39 39 A I H < S+ 0 0 38 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.820 108.0 48.4 -60.8 -33.6 5.9 -10.6 20.1 40 40 A S H < S+ 0 0 100 -4,-1.6 -1,-0.3 -3,-0.2 -2,-0.2 0.832 116.4 42.3 -75.3 -33.0 3.1 -10.8 17.6 41 41 A E H < S+ 0 0 112 -4,-1.5 -2,-0.2 -3,-0.3 -3,-0.2 0.851 98.8 86.1 -79.5 -36.8 4.5 -14.0 16.0 42 42 A W S < S- 0 0 10 -4,-3.2 2,-0.4 -5,-0.1 3,-0.0 -0.425 92.9-106.8 -70.3 132.7 5.4 -15.6 19.3 43 43 A P > - 0 0 64 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 -0.495 22.9-163.7 -65.0 118.7 2.5 -17.6 20.9 44 44 A R T 3 S+ 0 0 216 -2,-0.4 -2,-0.0 1,-0.3 -4,-0.0 0.722 91.7 66.2 -72.3 -22.2 1.2 -15.6 23.9 45 45 A E T 3 S+ 0 0 173 2,-0.1 2,-0.3 -3,-0.0 -1,-0.3 0.600 79.9 112.9 -70.2 -13.4 -0.5 -18.9 24.9 46 46 A K < - 0 0 77 -3,-1.1 2,-0.4 4,-0.1 3,-0.2 -0.459 54.7-157.7 -68.5 122.9 3.1 -20.3 25.4 47 47 A E S S+ 0 0 109 -2,-0.3 -2,-0.1 1,-0.2 52,-0.0 -0.829 70.7 25.3 -96.4 146.5 4.0 -21.1 28.9 48 48 A N S S+ 0 0 148 -2,-0.4 -1,-0.2 1,-0.3 46,-0.1 0.999 108.7 59.6 62.1 74.5 7.6 -21.1 29.8 49 49 A G S S- 0 0 7 -3,-0.2 -1,-0.3 46,-0.1 7,-0.1 -0.793 94.4 -56.5 162.8 170.8 9.2 -18.9 27.3 50 50 A P + 0 0 0 0, 0.0 3,-0.1 0, 0.0 -4,-0.1 0.019 50.9 146.3 -55.5 172.1 9.1 -15.3 26.2 51 51 A K + 0 0 19 1,-0.7 2,-0.3 -6,-0.1 -7,-0.0 0.117 58.3 73.7 176.0 -16.6 5.8 -13.6 25.0 52 52 A T S >> S- 0 0 23 1,-0.1 3,-1.1 -8,-0.0 4,-0.9 -0.772 92.1-105.8-104.8 164.0 6.2 -10.2 26.2 53 53 A V G >4 S+ 0 0 59 -2,-0.3 3,-0.5 1,-0.3 -1,-0.1 0.856 114.7 49.7 -56.7 -43.2 8.6 -7.6 24.7 54 54 A K G 34 S+ 0 0 139 1,-0.2 -1,-0.3 3,-0.0 -19,-0.0 0.674 102.5 63.2 -75.2 -16.8 11.2 -7.6 27.4 55 55 A E G <4 S+ 0 0 8 -3,-1.1 38,-0.7 -6,-0.0 2,-0.4 0.820 87.5 77.4 -80.8 -30.0 11.6 -11.4 27.5 56 56 A V E << -C 92 0A 1 -4,-0.9 2,-0.5 -3,-0.5 36,-0.1 -0.661 60.9-161.0 -94.2 132.6 12.8 -12.0 24.0 57 57 A K E -C 91 0A 55 34,-1.1 34,-1.7 -2,-0.4 2,-0.5 -0.948 4.2-155.5-113.1 126.4 16.4 -11.4 22.9 58 58 A L E -C 90 0A 1 -2,-0.5 7,-3.2 7,-0.4 2,-0.4 -0.889 16.3-175.9-100.7 123.8 17.4 -11.0 19.3 59 59 A I E +CD 89 64A 35 30,-3.0 30,-1.7 -2,-0.5 2,-0.4 -0.979 8.8 172.7-130.3 124.1 21.1 -11.9 18.6 60 60 A S E > S- D 0 63A 31 3,-2.6 3,-1.0 -2,-0.4 28,-0.1 -0.997 73.1 -3.3-132.1 130.3 22.9 -11.6 15.3 61 61 A A T 3 S- 0 0 108 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.633 131.2 -57.7 64.0 19.2 26.7 -12.1 14.7 62 62 A G T 3 S+ 0 0 72 1,-0.3 2,-0.4 0, 0.0 -1,-0.3 0.735 116.3 115.0 83.2 25.4 27.0 -12.6 18.4 63 63 A K E < -D 60 0A 117 -3,-1.0 -3,-2.6 11,-0.0 2,-0.3 -0.995 64.0-131.8-131.0 125.0 25.5 -9.2 19.2 64 64 A V E -D 59 0A 82 -2,-0.4 2,-0.9 -5,-0.3 -5,-0.3 -0.594 28.3-120.6 -74.9 133.8 22.2 -8.6 21.0 65 65 A L - 0 0 9 -7,-3.2 -7,-0.4 -2,-0.3 2,-0.3 -0.697 21.0-148.6 -81.9 107.9 20.1 -6.2 19.2 66 66 A E > - 0 0 104 -2,-0.9 3,-1.6 1,-0.1 -35,-0.3 -0.586 15.8-131.2 -71.7 139.2 19.3 -3.2 21.3 67 67 A N T 3 S+ 0 0 69 1,-0.3 -35,-1.4 -2,-0.3 -36,-0.4 0.720 103.1 70.4 -66.4 -21.3 15.8 -1.8 20.5 68 68 A S T 3 S+ 0 0 104 -37,-0.2 -1,-0.3 -38,-0.1 2,-0.2 0.370 94.2 68.6 -78.7 3.3 17.3 1.7 20.3 69 69 A K S < S- 0 0 73 -3,-1.6 -38,-3.4 1,-0.0 -37,-0.4 -0.702 80.4-122.8-116.8 167.3 19.1 0.7 17.1 70 70 A T B > -E 30 0B 38 -40,-0.3 3,-0.5 -2,-0.2 4,-0.4 -0.587 27.5-108.5-105.8 172.9 17.7 -0.0 13.7 71 71 A V G >> S+ 0 0 4 -42,-3.2 3,-2.0 -44,-0.4 4,-0.8 0.880 119.1 65.8 -65.8 -34.4 18.1 -3.1 11.6 72 72 A K G >4 S+ 0 0 130 -45,-2.6 3,-0.5 -43,-0.4 -1,-0.2 0.813 89.5 66.8 -54.4 -33.8 20.4 -1.0 9.4 73 73 A D G <4 S+ 0 0 82 -3,-0.5 -1,-0.3 -46,-0.3 -2,-0.2 0.759 112.1 31.1 -59.2 -28.9 22.8 -0.9 12.3 74 74 A Y G <4 S+ 0 0 50 -3,-2.0 -1,-0.2 -4,-0.4 -2,-0.2 0.424 109.6 92.8-110.3 -3.5 23.4 -4.6 11.9 75 75 A R S << S- 0 0 31 -4,-0.8 -3,-0.1 -3,-0.5 -5,-0.0 -0.209 78.4 -98.6 -90.6 175.4 22.9 -4.8 8.2 76 76 A S - 0 0 66 1,-0.2 -1,-0.1 -2,-0.1 4,-0.1 -0.507 49.4 -92.5 -86.4 159.5 25.1 -4.6 5.1 77 77 A P > - 0 0 97 0, 0.0 3,-0.6 0, 0.0 -1,-0.2 0.037 47.1 -87.7 -63.9-177.6 25.4 -1.3 3.1 78 78 A V T 3 S+ 0 0 150 1,-0.3 -2,-0.0 0, 0.0 0, 0.0 0.537 114.5 87.9 -74.2 -1.5 23.2 -0.3 0.1 79 79 A S T 3 S+ 0 0 112 2,-0.0 2,-0.4 0, 0.0 -1,-0.3 0.165 79.1 76.8 -83.5 21.6 25.7 -2.2 -2.0 80 80 A N S < S- 0 0 62 -3,-0.6 2,-0.1 -4,-0.1 0, 0.0 -0.970 79.3-130.3-133.3 141.5 23.7 -5.2 -1.3 81 81 A L > - 0 0 144 -2,-0.4 3,-0.9 1,-0.1 -2,-0.0 -0.195 29.8 -98.9 -87.4-178.6 20.4 -6.1 -3.0 82 82 A A T 3 S+ 0 0 38 1,-0.2 -73,-0.2 -76,-0.1 -75,-0.1 0.149 106.1 85.2 -88.1 21.2 17.1 -7.2 -1.5 83 83 A G T 3 + 0 0 73 -75,-0.1 2,-0.7 -77,-0.1 -1,-0.2 0.503 63.0 99.8 -99.2 -6.2 17.9 -10.8 -2.2 84 84 A A < - 0 0 36 -3,-0.9 -75,-0.4 -74,-0.0 2,-0.3 -0.733 57.3-162.3 -87.2 115.8 19.9 -11.3 0.9 85 85 A V - 0 0 84 -2,-0.7 2,-0.4 -77,-0.2 -75,-0.2 -0.736 6.4-148.7 -95.1 146.1 17.9 -13.1 3.6 86 86 A T E -b 10 0A 40 -77,-3.6 -75,-2.4 -2,-0.3 2,-0.6 -0.942 6.0-158.9-119.2 136.3 19.0 -13.0 7.1 87 87 A T E -b 11 0A 63 -2,-0.4 2,-0.4 -77,-0.2 -75,-0.2 -0.969 16.4-170.5-115.4 119.0 18.6 -15.6 9.8 88 88 A M E -b 12 0A 4 -77,-2.9 -75,-3.3 -2,-0.6 2,-0.3 -0.871 18.6-121.5-115.8 142.6 18.8 -14.4 13.3 89 89 A H E -bC 13 59A 83 -30,-1.7 -30,-3.0 -2,-0.4 2,-0.5 -0.598 15.1-156.3 -84.0 141.1 19.0 -16.3 16.6 90 90 A V E -bC 14 58A 0 -77,-2.6 -75,-2.2 -2,-0.3 2,-0.5 -0.978 10.1-155.8-115.0 120.3 16.5 -15.9 19.3 91 91 A I E - C 0 57A 59 -34,-1.7 -34,-1.1 -2,-0.5 2,-0.8 -0.835 15.0-128.0-102.7 135.0 17.7 -16.8 22.7 92 92 A I E + C 0 56A 55 -2,-0.5 2,-0.6 -36,-0.1 -36,-0.1 -0.708 30.8 172.9 -87.9 108.0 15.3 -17.9 25.3 93 93 A Q - 0 0 89 -2,-0.8 -44,-0.1 -38,-0.7 -2,-0.0 -0.948 12.8-163.3-118.6 110.9 15.8 -16.0 28.5 94 94 A A - 0 0 64 -2,-0.6 2,-0.1 -44,-0.1 -2,-0.0 -0.792 14.2-131.1 -97.2 129.9 13.2 -16.6 31.0 95 95 A P - 0 0 55 0, 0.0 2,-1.0 0, 0.0 3,-0.4 -0.425 30.4 -99.7 -74.7 153.8 12.7 -14.2 34.0 96 96 A V S S- 0 0 142 1,-0.3 0, 0.0 -2,-0.1 0, 0.0 -0.668 99.2 -20.1 -78.9 102.7 12.5 -15.5 37.6 97 97 A T S S+ 0 0 138 -2,-1.0 2,-0.3 1,-0.2 -1,-0.3 0.989 100.7 126.2 57.1 84.9 8.8 -15.4 38.2 98 98 A E + 0 0 102 -3,-0.4 -1,-0.2 3,-0.0 2,-0.2 -0.898 20.8 159.2-165.8 139.6 7.3 -13.0 35.6 99 99 A K - 0 0 109 -2,-0.3 2,-0.1 1,-0.1 -52,-0.0 -0.669 61.5 -73.5-174.0 109.6 4.6 -13.4 33.1 100 100 A E 0 0 101 -2,-0.2 -1,-0.1 1,-0.2 -49,-0.0 -0.065 360.0 360.0 38.6 -94.1 2.5 -10.8 31.2 101 101 A K 0 0 200 -2,-0.1 -1,-0.2 -3,-0.1 -3,-0.0 -0.434 360.0 360.0-168.1 360.0 0.3 -9.8 34.3