==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 03-MAR-04 1SJF . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5887.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 174 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.1 41.4 30.0 76.6 2 5 A E - 0 0 82 1,-0.0 2,-0.3 2,-0.0 80,-0.0 0.664 360.0-126.5 58.1 133.5 40.2 30.1 80.3 3 6 A T - 0 0 45 80,-0.0 80,-0.1 1,-0.0 3,-0.1 -0.751 15.7-110.4-111.3 159.5 42.7 31.3 82.9 4 7 A R - 0 0 154 -2,-0.3 -2,-0.0 81,-0.2 -1,-0.0 -0.546 52.3 -74.0 -86.3 153.3 43.9 29.7 86.1 5 8 A P - 0 0 88 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.109 60.7-179.3 -44.1 129.4 42.9 31.0 89.6 6 9 A N - 0 0 9 53,-0.2 57,-0.1 2,-0.1 56,-0.1 -0.860 44.1-121.1-134.9 167.1 44.7 34.2 90.5 7 10 A H S S+ 0 0 40 -2,-0.3 49,-2.2 55,-0.1 2,-0.5 0.705 101.5 64.4 -75.9 -22.5 45.1 36.8 93.3 8 11 A T E S-A 55 0A 0 47,-0.2 76,-3.3 76,-0.1 2,-0.5 -0.895 70.7-154.5-110.8 131.2 43.9 39.3 90.7 9 12 A I E -AB 54 83A 0 45,-2.4 45,-2.8 -2,-0.5 2,-0.5 -0.864 11.4-144.6-104.3 135.1 40.5 39.5 89.0 10 13 A Y E -AB 53 82A 46 72,-1.9 72,-1.8 -2,-0.5 2,-0.4 -0.860 17.7-170.6 -96.7 126.3 40.3 41.2 85.7 11 14 A I E +AB 52 81A 0 41,-2.9 41,-2.1 -2,-0.5 2,-0.2 -0.977 12.2 161.4-121.3 130.9 37.0 43.1 85.1 12 15 A N E +AB 51 80A 31 68,-2.0 68,-1.5 -2,-0.4 39,-0.2 -0.776 47.4 67.3-136.8-175.8 35.9 44.5 81.8 13 16 A N S S+ 0 0 44 37,-0.6 2,-0.2 1,-0.2 38,-0.2 0.787 73.7 156.0 69.3 27.0 32.7 45.7 80.0 14 17 A L - 0 0 4 36,-2.1 2,-0.7 -3,-0.2 -1,-0.2 -0.555 57.7 -90.1 -84.1 152.0 32.9 48.5 82.6 15 18 A N > - 0 0 37 59,-0.3 3,-1.2 -2,-0.2 35,-0.1 -0.474 38.1-162.6 -67.1 110.3 31.2 51.8 82.0 16 19 A E T 3 S+ 0 0 94 -2,-0.7 -1,-0.2 1,-0.3 34,-0.1 0.722 78.5 75.5 -68.3 -22.4 33.9 53.9 80.3 17 20 A K T 3 S+ 0 0 83 2,-0.0 2,-0.5 33,-0.0 -1,-0.3 0.446 77.2 101.1 -72.5 6.4 32.2 57.2 80.9 18 21 A I S < S- 0 0 23 -3,-1.2 -4,-0.0 1,-0.0 0, 0.0 -0.786 78.2-117.6 -97.8 129.7 33.3 57.0 84.5 19 22 A K > - 0 0 144 -2,-0.5 4,-2.6 1,-0.1 5,-0.2 -0.228 25.2-118.3 -58.7 149.8 36.3 58.9 85.8 20 23 A K H > S+ 0 0 103 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.897 107.7 52.2 -55.4 -53.9 39.2 56.8 87.1 21 24 A D H > S+ 0 0 99 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.904 115.3 43.7 -53.2 -46.2 39.4 58.0 90.8 22 25 A E H > S+ 0 0 89 2,-0.2 4,-3.4 1,-0.2 5,-0.3 0.968 109.9 53.3 -63.4 -59.9 35.6 57.3 91.2 23 26 A L H X S+ 0 0 8 -4,-2.6 4,-2.6 1,-0.3 5,-0.3 0.918 109.0 50.9 -44.2 -50.5 35.6 54.0 89.4 24 27 A K H X S+ 0 0 70 -4,-2.6 4,-2.0 1,-0.2 -1,-0.3 0.949 114.0 45.1 -54.3 -46.2 38.4 52.8 91.7 25 28 A K H X S+ 0 0 133 -4,-1.8 4,-1.7 -5,-0.2 -2,-0.2 0.922 112.0 50.1 -64.9 -45.2 36.4 54.0 94.7 26 29 A S H X S+ 0 0 31 -4,-3.4 4,-0.9 1,-0.2 -1,-0.2 0.837 110.7 50.7 -61.8 -34.7 33.1 52.5 93.5 27 30 A L H >X S+ 0 0 0 -4,-2.6 4,-1.8 -5,-0.3 3,-0.6 0.891 108.2 51.0 -71.2 -39.6 34.8 49.1 92.9 28 31 A H H 3X S+ 0 0 88 -4,-2.0 4,-1.4 -5,-0.3 -1,-0.2 0.856 103.0 63.5 -64.7 -31.1 36.3 49.1 96.3 29 32 A A H 3< S+ 0 0 72 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.820 114.4 29.1 -63.4 -31.8 32.8 49.8 97.6 30 33 A I H << S+ 0 0 39 -4,-0.9 -1,-0.2 -3,-0.6 -2,-0.2 0.642 121.6 47.1-107.6 -10.6 31.4 46.5 96.3 31 34 A F H >< S+ 0 0 0 -4,-1.8 3,-1.5 1,-0.1 4,-0.3 0.502 84.7 86.2-106.1 -8.0 34.4 44.2 96.4 32 35 A S G >< S+ 0 0 52 -4,-1.4 3,-1.7 1,-0.3 -1,-0.1 0.839 78.8 66.9 -64.8 -30.9 35.9 44.8 99.9 33 36 A R G 3 S+ 0 0 176 1,-0.3 -1,-0.3 -4,-0.2 3,-0.1 0.471 91.4 63.9 -68.5 -1.2 33.6 42.3 101.5 34 37 A F G < S- 0 0 22 -3,-1.5 -1,-0.3 1,-0.4 2,-0.2 0.587 121.8 -64.2 -97.0 -11.4 35.3 39.4 99.7 35 38 A G S < S- 0 0 22 -3,-1.7 -1,-0.4 -4,-0.3 -4,-0.0 -0.791 75.3 -37.1 147.7 169.2 38.6 40.1 101.4 36 39 A Q - 0 0 122 -2,-0.2 21,-1.6 -3,-0.1 2,-0.4 -0.202 54.8-144.7 -55.3 146.8 41.4 42.6 101.8 37 40 A I E -C 56 0A 25 19,-0.2 19,-0.2 1,-0.1 3,-0.1 -0.965 14.9-169.0-117.3 134.0 42.2 44.4 98.6 38 41 A L E - 0 0 57 17,-3.5 2,-0.3 -2,-0.4 18,-0.2 0.826 67.3 -37.2 -90.3 -33.2 45.8 45.4 97.9 39 42 A D E -C 55 0A 67 16,-1.1 16,-3.1 2,-0.0 2,-0.4 -0.974 41.8-134.3-179.4 164.5 44.9 47.7 95.0 40 43 A I E -C 54 0A 7 -2,-0.3 2,-0.6 14,-0.2 14,-0.2 -0.996 20.9-156.1-135.1 126.3 42.7 48.4 92.0 41 44 A L E +C 53 0A 69 12,-2.2 12,-1.8 -2,-0.4 2,-0.4 -0.929 15.7 174.0-111.8 120.0 44.3 49.5 88.8 42 45 A V E +C 52 0A 9 -2,-0.6 2,-0.4 10,-0.2 10,-0.1 -0.969 4.3 179.1-123.6 137.1 42.2 51.5 86.3 43 46 A S - 0 0 50 5,-0.6 8,-0.4 8,-0.5 7,-0.1 -0.998 18.0-160.1-137.1 137.2 43.5 53.1 83.2 44 47 A R + 0 0 108 -2,-0.4 5,-0.2 5,-0.2 -1,-0.0 0.218 49.4 126.7-102.4 13.9 41.4 55.0 80.7 45 48 A S S > S- 0 0 57 1,-0.1 4,-1.8 3,-0.1 -2,-0.1 -0.093 79.5 -96.2 -63.1 170.4 43.8 54.8 77.7 46 49 A L T 4 S+ 0 0 146 1,-0.2 3,-0.1 2,-0.2 -1,-0.1 0.914 124.5 39.3 -54.9 -45.1 42.5 53.4 74.4 47 50 A K T 4 S+ 0 0 169 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.829 123.7 36.8 -77.3 -33.3 43.7 49.9 75.2 48 51 A M T >4 S+ 0 0 53 2,-0.0 3,-1.1 3,-0.0 -5,-0.6 0.441 83.9 116.4-104.4 1.6 42.9 49.7 78.9 49 52 A R T 3< S+ 0 0 92 -4,-1.8 -5,-0.2 1,-0.2 3,-0.1 -0.351 74.8 27.6 -69.5 150.3 39.6 51.6 79.2 50 53 A G T 3 S+ 0 0 12 1,-0.3 -36,-2.1 -35,-0.1 -37,-0.6 0.546 108.6 89.6 77.4 5.7 36.5 49.7 80.3 51 54 A Q E < -A 12 0A 33 -3,-1.1 -8,-0.5 -8,-0.4 2,-0.3 -0.866 50.4-176.0-129.7 166.1 38.7 47.3 82.3 52 55 A A E -AC 11 42A 0 -41,-2.1 -41,-2.9 -2,-0.3 2,-0.6 -0.985 20.5-137.8-159.4 151.4 40.1 47.1 85.8 53 56 A F E -AC 10 41A 61 -12,-1.8 -12,-2.2 -2,-0.3 2,-0.8 -0.958 14.3-164.2-117.4 113.9 42.3 44.9 87.9 54 57 A V E -AC 9 40A 0 -45,-2.8 -45,-2.4 -2,-0.6 2,-1.0 -0.868 11.2-154.9 -97.5 111.9 41.2 44.2 91.4 55 58 A I E -AC 8 39A 0 -16,-3.1 -17,-3.5 -2,-0.8 -16,-1.1 -0.735 10.2-167.2 -94.8 101.3 44.1 42.8 93.3 56 59 A F E - C 0 37A 0 -49,-2.2 -19,-0.2 -2,-1.0 3,-0.1 -0.489 23.1-137.0 -83.4 150.6 43.0 40.6 96.3 57 60 A K S S+ 0 0 96 -21,-1.6 2,-0.4 1,-0.2 -1,-0.1 0.794 91.5 40.6 -77.3 -26.9 45.5 39.6 99.0 58 61 A E S >> S- 0 0 107 -22,-0.4 4,-1.4 -51,-0.1 3,-1.3 -0.979 74.9-137.2-128.5 125.2 44.1 36.0 99.1 59 62 A V H 3> S+ 0 0 46 -2,-0.4 4,-3.0 1,-0.3 5,-0.2 0.793 103.7 61.9 -45.1 -37.5 43.2 33.9 96.1 60 63 A S H 3> S+ 0 0 62 2,-0.2 4,-3.5 1,-0.2 -1,-0.3 0.937 102.3 52.1 -57.0 -45.2 40.0 32.6 97.9 61 64 A S H <> S+ 0 0 12 -3,-1.3 4,-2.9 1,-0.2 5,-0.3 0.939 110.5 47.0 -55.6 -50.7 38.7 36.2 98.0 62 65 A A H X S+ 0 0 0 -4,-1.4 4,-2.9 1,-0.2 -1,-0.2 0.919 112.8 50.7 -58.8 -42.5 39.3 36.6 94.3 63 66 A T H X S+ 0 0 17 -4,-3.0 4,-2.2 -5,-0.2 -2,-0.2 0.943 112.7 45.1 -61.4 -47.4 37.6 33.3 93.7 64 67 A N H X S+ 0 0 85 -4,-3.5 4,-2.2 2,-0.2 5,-0.3 0.957 113.9 48.7 -58.7 -54.0 34.6 34.3 95.8 65 68 A A H X S+ 0 0 0 -4,-2.9 4,-2.4 1,-0.2 5,-0.3 0.910 110.4 52.9 -52.9 -46.3 34.3 37.7 94.3 66 69 A L H X S+ 0 0 26 -4,-2.9 4,-0.7 -5,-0.3 -1,-0.2 0.930 111.2 45.0 -58.2 -46.4 34.5 36.2 90.8 67 70 A R H < S+ 0 0 197 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.825 121.5 36.9 -69.2 -30.3 31.7 33.7 91.4 68 71 A S H < S+ 0 0 64 -4,-2.2 -2,-0.2 -5,-0.2 -3,-0.2 0.902 116.4 43.9 -90.0 -46.8 29.3 36.2 93.0 69 72 A M H >< S+ 0 0 7 -4,-2.4 3,-2.5 -5,-0.3 10,-0.2 0.526 79.1 125.1 -81.1 -4.3 29.8 39.5 91.2 70 73 A Q T 3< S+ 0 0 93 -4,-0.7 10,-0.2 -5,-0.3 9,-0.1 -0.296 84.5 9.6 -54.4 134.8 29.8 37.9 87.8 71 74 A G T 3 S+ 0 0 36 8,-1.6 -1,-0.3 1,-0.2 9,-0.1 0.338 91.8 157.2 76.4 -8.8 27.0 39.6 85.8 72 75 A F < - 0 0 82 -3,-2.5 7,-3.0 6,-0.2 2,-0.6 -0.206 46.7-118.6 -57.3 133.0 26.5 42.3 88.4 73 76 A P E +D 78 0B 88 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.632 42.8 166.2 -74.3 117.8 24.9 45.6 87.2 74 77 A F E > S-D 77 0B 19 3,-3.2 3,-1.6 -2,-0.6 -59,-0.3 -0.994 71.4 -8.1-137.1 123.3 27.4 48.4 87.9 75 78 A Y T 3 S- 0 0 51 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.0 0.903 131.7 -56.3 53.8 42.7 26.9 51.8 86.3 76 79 A D T 3 S+ 0 0 163 1,-0.2 -1,-0.3 -61,-0.0 0, 0.0 0.605 122.3 95.4 67.5 12.2 24.1 50.3 84.2 77 80 A K E < S-D 74 0B 64 -3,-1.6 -3,-3.2 -5,-0.1 2,-0.5 -0.984 78.0-112.7-134.2 147.2 26.3 47.6 82.8 78 81 A P E -D 73 0B 71 0, 0.0 -6,-0.2 0, 0.0 -7,-0.1 -0.654 33.9-126.6 -80.3 120.3 26.9 43.9 83.7 79 82 A M - 0 0 3 -7,-3.0 -8,-1.6 -2,-0.5 2,-0.5 -0.324 14.6-150.1 -62.6 148.9 30.5 43.4 85.0 80 83 A R E -B 12 0A 117 -68,-1.5 -68,-2.0 -10,-0.2 2,-0.3 -0.952 22.0-171.2-123.8 104.7 32.4 40.6 83.2 81 84 A I E +B 11 0A 7 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.744 16.9 149.5-105.4 148.9 34.8 39.1 85.6 82 85 A Q E -B 10 0A 79 -72,-1.8 -72,-1.9 -2,-0.3 2,-0.3 -0.891 50.6 -81.2-154.4 179.2 37.7 36.5 85.1 83 86 A Y E -B 9 0A 25 -2,-0.3 -74,-0.3 -74,-0.3 2,-0.1 -0.659 52.9-103.9 -88.3 148.3 41.0 35.8 86.7 84 87 A A - 0 0 3 -76,-3.3 -76,-0.1 -2,-0.3 -80,-0.1 -0.439 24.3-126.4 -70.2 149.5 44.0 37.9 85.5 85 88 A K S S+ 0 0 181 -82,-0.1 2,-0.3 1,-0.1 -81,-0.2 0.890 88.8 17.6 -63.8 -43.7 46.4 36.2 83.1 86 89 A T S S- 0 0 108 1,-0.1 -1,-0.1 -80,-0.0 -78,-0.1 -0.907 93.8 -88.9-128.5 158.3 49.5 36.9 85.1 87 90 A D - 0 0 78 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 -0.224 43.7-115.6 -62.0 154.7 50.2 37.9 88.7 88 91 A S >> - 0 0 15 1,-0.1 3,-2.6 -4,-0.0 4,-1.8 -0.725 25.7-113.4 -92.5 145.7 50.3 41.6 89.4 89 92 A D H 3> S+ 0 0 107 -2,-0.3 4,-3.5 1,-0.3 5,-0.2 0.846 117.0 61.8 -43.9 -47.9 53.7 43.1 90.6 90 93 A I H 34 S+ 0 0 64 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.809 110.9 43.2 -50.7 -30.2 52.3 43.9 94.0 91 94 A I H X> S+ 0 0 5 -3,-2.6 3,-2.0 2,-0.1 4,-1.0 0.891 111.1 51.7 -83.0 -43.9 51.8 40.1 94.2 92 95 A A H 3< S+ 0 0 58 -4,-1.8 -2,-0.2 1,-0.3 -3,-0.2 0.970 99.3 65.6 -55.3 -53.2 55.2 39.1 92.6 93 96 A K T 3< S+ 0 0 169 -4,-3.5 -1,-0.3 2,-0.1 -2,-0.1 0.570 120.0 21.2 -47.0 -9.9 56.9 41.4 95.2 94 97 A M T <4 0 0 145 -3,-2.0 -2,-0.2 -5,-0.2 -3,-0.1 0.553 360.0 360.0-118.4 -84.4 55.7 39.0 97.8 95 98 A K < 0 0 98 -4,-1.0 -2,-0.1 0, 0.0 -1,-0.1 -0.560 360.0 360.0 -79.8 360.0 54.7 35.5 96.6