==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 05-MAR-04 1SLJ . COMPND 2 MOLECULE: RIBONUCLEASE E; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR M.SCHUBERT,R.E.EDGE,P.LARIO,M.A.COOK,N.C.J.STRYNADKA, . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6357.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 53.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 21.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 30 A G 0 0 125 0, 0.0 2,-2.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-163.7 8.5 9.8 -13.4 2 31 A S + 0 0 111 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.449 360.0 97.9 -80.3 68.9 7.5 10.9 -9.9 3 32 A H + 0 0 103 -2,-2.3 2,-0.9 3,-0.0 -1,-0.1 -0.410 34.4 153.1-154.5 68.4 10.3 8.9 -8.2 4 33 A M S S- 0 0 168 1,-0.0 2,-0.6 0, 0.0 -2,-0.0 -0.810 74.3 -72.4-104.4 91.9 13.2 11.2 -7.3 5 34 A L S S- 0 0 122 -2,-0.9 7,-0.4 2,-0.1 2,-0.3 -0.469 81.5 -82.4 61.8-105.2 14.8 9.6 -4.3 6 35 A E - 0 0 60 -2,-0.6 2,-0.6 5,-0.2 5,-0.1 -0.941 38.2 -83.5-173.2-174.4 12.3 10.3 -1.5 7 36 A Q S S- 0 0 123 3,-0.3 3,-0.1 -2,-0.3 -2,-0.1 -0.740 85.5 -61.3-115.7 82.4 11.3 13.0 1.0 8 37 A K S S+ 0 0 182 -2,-0.6 2,-0.2 1,-0.2 3,-0.1 0.677 118.3 83.8 59.0 20.8 13.5 12.9 4.1 9 38 A K S S- 0 0 69 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 -0.533 93.0 -52.7-131.7-168.8 12.3 9.3 4.7 10 39 A A S S- 0 0 49 -2,-0.2 2,-0.4 1,-0.1 -3,-0.3 -0.328 82.9 -71.0 -63.4 159.8 12.9 5.7 3.7 11 40 A N - 0 0 78 -5,-0.1 64,-0.5 64,-0.1 2,-0.2 -0.430 55.8-144.4 -61.6 114.4 12.8 5.2 -0.1 12 41 A I - 0 0 19 -7,-0.4 2,-0.3 -2,-0.4 62,-0.2 -0.539 13.9-152.4 -81.3 146.1 9.2 5.6 -1.1 13 42 A Y E -A 73 0A 66 60,-3.2 60,-2.7 -2,-0.2 2,-0.4 -0.889 12.6-158.8-123.6 152.8 7.9 3.4 -3.9 14 43 A K E +A 72 0A 84 -2,-0.3 2,-0.3 58,-0.2 58,-0.2 -0.849 38.3 130.3-134.1 96.6 5.2 3.8 -6.5 15 44 A G E -A 71 0A 4 56,-1.1 56,-2.4 -2,-0.4 2,-0.2 -0.834 49.0 -96.0-140.5 175.7 3.9 0.6 -7.9 16 45 A K E -AB 70 30A 99 14,-0.8 14,-2.1 54,-0.3 54,-0.3 -0.571 36.3 -99.5-100.3 159.5 0.7 -1.3 -8.7 17 46 A I E + B 0 29A 3 52,-2.3 51,-1.4 49,-0.5 12,-0.3 -0.513 38.5 169.6 -67.6 138.5 -1.3 -3.9 -6.8 18 47 A T E + 0 0 47 10,-3.3 2,-0.3 1,-0.3 11,-0.2 0.401 64.7 30.7-130.7 -7.2 -0.7 -7.4 -8.2 19 48 A R E + B 0 28A 118 9,-1.2 9,-2.6 47,-0.0 2,-0.4 -0.887 53.7 172.4-158.4 123.0 -2.3 -9.6 -5.6 20 49 A I E - B 0 27A 26 -2,-0.3 7,-0.2 7,-0.2 47,-0.1 -0.921 9.4-170.4-136.8 109.0 -5.3 -9.1 -3.3 21 50 A E E >>> - B 0 26A 60 5,-1.5 4,-2.2 -2,-0.4 3,-1.7 -0.884 14.6-161.9-104.3 113.2 -6.6 -11.9 -1.3 22 51 A P T 345S+ 0 0 68 0, 0.0 -1,-0.1 0, 0.0 40,-0.1 0.699 93.0 67.6 -59.8 -19.6 -10.0 -11.3 0.5 23 52 A S T 345S+ 0 0 114 1,-0.2 -2,-0.0 3,-0.1 -3,-0.0 0.756 116.1 21.9 -73.1 -26.0 -9.0 -14.2 2.6 24 53 A L T <45S- 0 0 75 -3,-1.7 17,-0.2 2,-0.2 -1,-0.2 0.516 98.6-130.3-119.7 -8.9 -6.1 -12.3 4.2 25 54 A E T <5 + 0 0 61 -4,-2.2 16,-3.2 1,-0.2 17,-0.4 0.959 69.5 96.5 59.4 57.2 -7.3 -8.6 3.5 26 55 A A E < -BC 21 40A 3 -5,-0.8 -5,-1.5 14,-0.3 2,-0.4 -0.979 59.5-131.1-168.1 162.6 -4.1 -7.3 2.0 27 56 A A E -BC 20 39A 0 12,-2.8 12,-3.4 -2,-0.3 2,-0.4 -0.947 7.9-139.4-129.2 142.0 -2.4 -6.6 -1.2 28 57 A F E -BC 19 38A 53 -9,-2.6 -10,-3.3 -2,-0.4 -9,-1.2 -0.807 20.4-152.8 -94.3 142.1 1.0 -7.4 -2.8 29 58 A V E -BC 17 37A 0 8,-2.3 8,-2.6 -2,-0.4 2,-0.9 -0.953 5.3-145.3-120.4 133.4 2.6 -4.6 -4.9 30 59 A D E +B 16 0A 77 -14,-2.1 -14,-0.8 -2,-0.4 2,-0.1 -0.835 37.7 145.6-103.7 99.7 5.0 -5.2 -7.7 31 60 A Y S S- 0 0 46 -2,-0.9 3,-0.1 -16,-0.2 -1,-0.1 -0.517 91.0 -66.8-126.8 66.6 7.7 -2.5 -7.9 32 61 A G S S+ 0 0 77 1,-0.2 2,-0.6 -2,-0.1 -2,-0.1 0.740 96.8 146.4 55.1 22.0 10.7 -4.4 -9.1 33 62 A A - 0 0 17 1,-0.1 3,-0.5 -4,-0.1 -1,-0.2 -0.817 44.4-158.3 -97.4 118.4 10.4 -6.1 -5.7 34 63 A E S S+ 0 0 192 -2,-0.6 -1,-0.1 1,-0.3 -4,-0.0 0.495 100.0 36.8 -74.0 -3.7 11.4 -9.7 -5.6 35 64 A R S S- 0 0 149 49,-0.0 -1,-0.3 44,-0.0 50,-0.2 0.495 110.7-129.4-117.1 -13.2 9.4 -10.2 -2.5 36 65 A H - 0 0 52 -3,-0.5 49,-0.8 48,-0.1 2,-0.5 0.507 24.7 -90.1 63.8 141.5 6.6 -7.9 -3.5 37 66 A G E -Cd 29 85A 0 -8,-2.6 -8,-2.3 47,-0.1 2,-0.7 -0.716 39.1-150.0 -83.1 126.4 5.4 -5.2 -1.1 38 67 A F E -Cd 28 86A 41 47,-3.3 49,-1.9 -2,-0.5 -10,-0.2 -0.864 13.3-174.3-107.2 111.5 2.6 -6.4 1.1 39 68 A L E -C 27 0A 0 -12,-3.4 -12,-2.8 -2,-0.7 2,-0.1 -0.913 17.1-141.3-106.8 111.6 0.1 -3.8 2.3 40 69 A P E >> -C 26 0A 39 0, 0.0 3,-1.7 0, 0.0 4,-0.7 -0.436 18.8-122.0 -69.2 145.0 -2.6 -4.9 4.8 41 70 A L G >4 S+ 0 0 13 -16,-3.2 3,-1.1 1,-0.3 -15,-0.1 0.829 108.0 63.1 -57.1 -39.7 -6.1 -3.6 4.4 42 71 A K G 34 S+ 0 0 137 -17,-0.4 -1,-0.3 1,-0.3 -16,-0.1 0.630 104.2 50.5 -67.5 -9.7 -6.3 -2.0 7.9 43 72 A E G <4 S+ 0 0 51 -3,-1.7 -1,-0.3 44,-0.1 -2,-0.2 0.702 83.7 129.4 -92.8 -22.0 -3.5 0.3 6.7 44 73 A I << - 0 0 7 -3,-1.1 2,-0.2 -4,-0.7 45,-0.1 0.084 49.4-140.2 -48.8 134.8 -5.2 1.3 3.5 45 74 A A >> - 0 0 14 1,-0.1 3,-2.4 50,-0.0 4,-0.8 -0.597 25.3-108.8 -93.8 156.3 -5.5 5.0 2.7 46 75 A R T 34 S+ 0 0 61 1,-0.3 7,-0.2 -2,-0.2 -1,-0.1 0.622 113.0 75.6 -56.8 -16.9 -8.4 6.8 1.1 47 76 A E T 34 S+ 0 0 87 1,-0.2 -1,-0.3 3,-0.2 4,-0.1 0.784 94.3 51.1 -65.1 -24.6 -6.3 7.2 -2.0 48 77 A Y T <4 S+ 0 0 2 -3,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.938 114.0 40.0 -82.4 -50.7 -7.0 3.5 -2.7 49 78 A F S < S- 0 0 15 -4,-0.8 -1,-0.3 4,-0.1 4,-0.2 -0.880 119.5-102.0 -97.8 101.1 -10.7 3.7 -2.4 50 79 A P > - 0 0 69 0, 0.0 3,-3.5 0, 0.0 -3,-0.2 0.325 16.3-118.6 -39.1 141.8 -11.2 7.0 -4.2 51 80 A A T 3 S+ 0 0 26 1,-0.3 4,-0.1 -4,-0.1 -4,-0.1 0.604 116.7 63.1 -52.7 -13.9 -11.8 10.1 -2.1 52 81 A N T 3 S+ 0 0 162 2,-0.1 2,-0.3 44,-0.0 -1,-0.3 0.569 88.5 89.5 -86.3 -11.1 -15.1 10.3 -4.0 53 82 A Y S < S- 0 0 109 -3,-3.5 2,-0.2 -7,-0.2 -4,-0.1 -0.680 92.2-103.0 -90.7 139.6 -16.1 7.0 -2.4 54 83 A S - 0 0 98 -2,-0.3 2,-0.5 2,-0.0 -2,-0.1 -0.435 41.2-175.2 -65.6 125.6 -17.9 7.1 0.9 55 84 A A + 0 0 35 -2,-0.2 2,-0.2 -4,-0.1 -1,-0.0 -0.960 18.6 154.4-130.0 114.7 -15.6 6.2 3.8 56 85 A H S S- 0 0 190 -2,-0.5 2,-0.5 2,-0.1 -2,-0.0 -0.624 71.0 -27.4-139.6 77.3 -16.7 5.7 7.4 57 86 A G S S+ 0 0 60 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.947 115.3 2.7 128.0-113.6 -14.5 3.4 9.3 58 87 A R - 0 0 156 -2,-0.5 -16,-0.1 2,-0.0 -2,-0.1 -0.964 66.9-132.9-121.6 121.6 -12.4 0.7 7.8 59 88 A P - 0 0 16 0, 0.0 2,-0.5 0, 0.0 -15,-0.1 -0.063 17.0-122.4 -59.8 166.2 -12.3 0.0 4.0 60 89 A N > - 0 0 71 1,-0.1 3,-2.5 3,-0.1 4,-0.1 -0.925 15.9-155.0-118.3 107.2 -12.6 -3.4 2.5 61 90 A I G >> S+ 0 0 0 -2,-0.5 4,-2.6 1,-0.3 3,-1.8 0.788 88.4 65.8 -56.8 -37.7 -9.5 -4.2 0.4 62 91 A K G 34 S+ 0 0 101 1,-0.3 -1,-0.3 2,-0.2 -42,-0.0 0.740 119.2 25.7 -56.1 -24.7 -11.3 -6.7 -1.9 63 92 A D G <4 S+ 0 0 82 -3,-2.5 -1,-0.3 3,-0.0 -2,-0.2 0.076 123.7 55.2-125.3 20.9 -13.4 -3.8 -3.2 64 93 A V T <4 S+ 0 0 0 -3,-1.8 2,-0.3 1,-0.3 -3,-0.2 0.700 106.1 41.2-117.1 -48.7 -10.9 -1.1 -2.5 65 94 A L < - 0 0 3 -4,-2.6 -1,-0.3 -5,-0.1 2,-0.3 -0.751 63.7-175.1-103.2 151.4 -7.7 -2.1 -4.2 66 95 A R > - 0 0 108 -2,-0.3 3,-2.2 -3,-0.1 -49,-0.5 -0.989 38.2 -94.5-146.8 138.8 -7.5 -3.7 -7.6 67 96 A E T 3 S+ 0 0 136 -2,-0.3 -49,-0.2 1,-0.3 3,-0.1 -0.312 115.1 38.0 -54.1 121.4 -4.5 -5.1 -9.6 68 97 A G T 3 S+ 0 0 55 -51,-1.4 2,-0.5 1,-0.4 -1,-0.3 0.263 87.1 118.6 111.2 -8.0 -3.2 -2.3 -11.7 69 98 A Q < - 0 0 39 -3,-2.2 -52,-2.3 -52,-0.1 -1,-0.4 -0.815 57.6-138.9 -90.5 129.0 -3.8 0.4 -9.1 70 99 A E E -A 16 0A 92 -2,-0.5 2,-0.3 -54,-0.3 -54,-0.3 -0.484 18.0-167.4 -84.9 157.0 -0.7 2.2 -8.0 71 100 A V E -A 15 0A 2 -56,-2.4 -56,-1.1 -2,-0.2 2,-0.7 -0.964 24.7-127.3-139.3 155.9 0.2 3.2 -4.5 72 101 A I E +A 14 0A 48 -2,-0.3 2,-0.3 -58,-0.2 -58,-0.2 -0.927 52.1 149.3-102.7 110.4 2.7 5.4 -2.8 73 102 A V E -A 13 0A 0 -60,-2.7 -60,-3.2 -2,-0.7 2,-0.3 -0.985 32.6-161.8-147.3 147.5 4.4 3.1 -0.2 74 103 A Q - 0 0 24 -2,-0.3 14,-2.4 -62,-0.2 2,-0.8 -0.916 38.4 -96.6-128.1 158.7 7.6 2.6 1.7 75 104 A I E +E 87 0A 36 -64,-0.5 12,-0.2 -2,-0.3 3,-0.1 -0.651 40.7 167.2 -83.9 109.7 8.8 -0.5 3.6 76 105 A D E S+ 0 0 86 10,-1.9 2,-0.5 -2,-0.8 -1,-0.2 0.843 74.7 43.1 -85.4 -40.8 8.1 -0.2 7.3 77 106 A K E S-E 86 0A 85 9,-0.9 9,-2.4 6,-0.1 -1,-0.2 -0.945 88.0-138.2-111.5 126.1 8.8 -3.8 8.0 78 107 A E - 0 0 132 -2,-0.5 6,-0.4 7,-0.2 5,-0.3 -0.340 27.7 -88.7 -85.7 158.4 11.8 -5.3 6.3 79 108 A E + 0 0 67 4,-0.2 -1,-0.1 1,-0.2 6,-0.1 -0.468 52.9 153.8 -67.0 131.1 12.2 -8.7 4.7 80 109 A R S S- 0 0 159 -2,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.114 72.2 -92.9-144.1 12.1 13.3 -11.2 7.2 81 110 A G S S+ 0 0 62 1,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.431 119.1 59.6 87.3 0.7 11.9 -14.3 5.6 82 111 A N S S+ 0 0 141 2,-0.1 -3,-0.1 0, 0.0 -1,-0.0 0.633 113.0 19.2-130.5 -31.0 8.7 -14.1 7.6 83 112 A K S S- 0 0 121 -5,-0.3 2,-0.2 1,-0.1 -4,-0.2 0.725 87.1-161.4-120.2 -38.8 6.9 -10.8 6.9 84 113 A G - 0 0 11 -6,-0.4 2,-1.4 2,-0.1 -1,-0.1 -0.529 51.4 -15.9 99.5-159.1 8.4 -9.6 3.7 85 114 A A E S-d 37 0A 10 -49,-0.8 -47,-3.3 -50,-0.2 2,-0.5 -0.719 74.9-162.1 -83.9 90.1 8.4 -6.2 2.1 86 115 A A E -dE 38 77A 8 -9,-2.4 -10,-1.9 -2,-1.4 -9,-0.9 -0.656 5.8-142.6 -85.7 126.0 5.7 -4.6 4.3 87 116 A L E - E 0 75A 3 -49,-1.9 -12,-0.2 -2,-0.5 2,-0.2 -0.656 11.8-154.4 -90.3 135.4 4.2 -1.5 2.9 88 117 A T - 0 0 11 -14,-2.4 -14,-0.2 -2,-0.3 -45,-0.0 -0.483 15.3-149.7 -95.3 172.4 3.2 1.4 5.2 89 118 A T + 0 0 34 -2,-0.2 2,-1.5 -16,-0.1 4,-0.3 0.096 64.7 114.5-126.8 18.6 0.6 4.0 4.7 90 119 A F + 0 0 180 -16,-0.1 2,-0.2 2,-0.1 -17,-0.1 -0.244 61.0 99.9 -81.1 46.9 2.4 6.7 6.7 91 120 A I S S- 0 0 23 -2,-1.5 2,-2.5 -19,-0.1 -18,-0.0 -0.764 95.9 -78.6-127.4 170.0 2.7 8.6 3.4 92 121 A S S S+ 0 0 111 -2,-0.2 2,-0.2 3,-0.0 -2,-0.1 -0.453 81.9 134.2 -72.4 72.4 0.9 11.5 1.7 93 122 A L + 0 0 21 -2,-2.5 3,-0.2 -4,-0.3 -47,-0.2 -0.682 28.9 61.2-116.2 171.8 -2.0 9.3 0.6 94 123 A A - 0 0 31 -2,-0.2 2,-2.1 -49,-0.2 -1,-0.1 0.981 62.5-148.8 72.3 80.4 -5.7 9.8 0.6 95 124 A G 0 0 51 1,-0.1 -1,-0.2 -50,-0.1 -3,-0.0 -0.203 360.0 360.0 -77.6 49.4 -6.3 12.8 -1.5 96 125 A S 0 0 125 -2,-2.1 -1,-0.1 -3,-0.2 -50,-0.1 -0.828 360.0 360.0-111.8 360.0 -9.4 13.8 0.5