==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DOUBLE STRANDED RNA BINDING DOMAIN 16-MAY-95 1STU . COMPND 2 MOLECULE: MATERNAL EFFECT PROTEIN STAUFEN; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR M.BYCROFT . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4915.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 82.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 20.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 33.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P > 0 0 69 0, 0.0 4,-1.5 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -39.6 -2.8 6.9 4.1 2 2 A I H > + 0 0 27 2,-0.2 4,-2.2 1,-0.2 5,-0.4 0.957 360.0 53.1 -76.6 -51.2 -4.0 3.6 5.5 3 3 A S H > S+ 0 0 86 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.891 108.4 54.0 -52.1 -37.5 -7.2 4.9 7.1 4 4 A Q H > S+ 0 0 122 2,-0.2 4,-2.3 3,-0.2 5,-0.3 0.983 111.5 42.9 -63.2 -53.6 -8.1 6.3 3.7 5 5 A V H X>S+ 0 0 0 -4,-1.5 4,-2.4 1,-0.2 5,-0.6 0.989 113.0 50.6 -54.9 -67.9 -7.7 3.0 1.9 6 6 A H H X>S+ 0 0 70 -4,-2.2 4,-1.6 1,-0.2 5,-0.6 0.857 109.4 57.7 -36.9 -38.9 -9.4 1.0 4.6 7 7 A E H X5S+ 0 0 121 -4,-1.9 4,-1.8 -5,-0.4 -1,-0.2 0.989 121.9 20.3 -60.1 -62.3 -12.2 3.7 4.1 8 8 A I H X>S+ 0 0 45 -4,-2.3 4,-1.9 -3,-0.2 5,-0.6 0.959 121.6 58.6 -74.1 -51.5 -12.8 3.1 0.4 9 9 A G H X>S+ 0 0 0 -4,-2.4 4,-2.2 -5,-0.3 5,-0.8 0.927 120.9 29.2 -44.3 -52.4 -11.3 -0.4 0.1 10 10 A I H < - B 0 41A 10 3,-2.5 3,-2.0 -2,-0.3 -22,-0.2 -0.970 54.1 -34.9-131.4 146.4 -7.0 -4.9 -1.9 39 39 A G T 3 S- 0 0 16 -2,-0.3 -24,-0.1 1,-0.3 -2,-0.0 -0.138 122.7 -34.7 42.4-112.9 -10.2 -6.8 -2.8 40 40 A S T 3 S+ 0 0 123 2,-0.1 2,-0.3 -26,-0.1 -1,-0.3 0.363 129.3 68.1-118.7 2.8 -8.8 -10.3 -3.6 41 41 A I E < S-B 38 0A 121 -3,-2.0 -3,-2.5 -26,-0.1 2,-0.2 -0.883 80.3-118.3-120.8 154.1 -5.5 -9.4 -5.1 42 42 A V E -B 37 0A 77 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.2 -0.537 20.9-172.0 -89.9 160.2 -2.4 -7.7 -3.4 43 43 A T E -B 36 0A 26 -7,-1.5 -7,-1.2 -2,-0.2 18,-0.1 -0.711 10.3-177.9-150.3 90.6 -1.0 -4.3 -4.3 44 44 A E E -B 35 0A 75 -9,-0.3 -9,-0.3 -2,-0.2 2,-0.2 -0.107 8.1-157.9 -81.1-172.8 2.3 -3.4 -2.6 45 45 A G E -B 34 0A 0 -11,-0.9 -11,-2.5 15,-0.1 2,-1.5 -0.775 18.1-132.5-169.3 119.6 4.2 -0.1 -3.0 46 46 A E E -B 33 0A 98 -13,-0.3 2,-0.6 -2,-0.2 -13,-0.3 -0.567 26.9-168.4 -80.4 92.0 7.9 0.7 -2.4 47 47 A G E -B 32 0A 0 -15,-2.0 -15,-2.4 -2,-1.5 2,-0.9 -0.671 28.3-119.5 -81.2 120.3 7.7 3.9 -0.3 48 48 A N E S+B 31 0A 76 -2,-0.6 -17,-0.3 -17,-0.3 2,-0.2 -0.404 84.7 25.8 -61.4 101.4 11.2 5.5 -0.1 49 49 A G B > S-c 31 0A 18 -19,-1.2 -17,-0.6 -2,-0.9 4,-0.5 -0.748 90.2 -91.6 133.7 177.1 11.8 5.4 3.7 50 50 A K T 4 S+ 0 0 167 -2,-0.2 4,-0.2 2,-0.1 -1,-0.1 0.873 122.8 33.9 -94.3 -46.5 10.6 3.5 6.7 51 51 A K T > S+ 0 0 180 1,-0.2 4,-0.6 2,-0.1 3,-0.3 0.611 116.8 59.2 -84.1 -9.7 7.6 5.6 7.8 52 52 A V H >> S+ 0 0 37 1,-0.2 4,-2.5 -5,-0.2 3,-0.8 0.874 79.1 82.8 -84.8 -39.3 6.8 6.4 4.2 53 53 A S H 3X S+ 0 0 0 -4,-0.5 4,-1.9 -6,-0.5 -19,-0.2 0.782 93.9 52.4 -35.6 -30.0 6.3 2.8 3.0 54 54 A K H 3> S+ 0 0 109 -3,-0.3 4,-2.4 -4,-0.2 5,-0.3 0.954 110.2 43.4 -76.3 -49.7 2.8 3.2 4.4 55 55 A K H